use of org.akaza.openclinica.dao.submit.ItemDAO in project OpenClinica by OpenClinica.
the class DataEntryServlet method getChildrenDisplayItems.
/**
* Get the DisplayItemBean objects corresponding to the items which are children of the specified parent.
*
* @param parent
* The item whose children are to be retrieved.
* @param request TODO
* @return An array of DisplayItemBean objects corresponding to the items which are children of parent, and are sorted by column number (ascending), then
* ordinal (ascending).
*/
private ArrayList getChildrenDisplayItems(DisplayItemBean parent, EventDefinitionCRFBean edcb, HttpServletRequest request) {
ArrayList answer = new ArrayList();
EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
int parentId = parent.getItem().getId();
ItemDAO idao = new ItemDAO(getDataSource());
ArrayList childItemBeans = idao.findAllByParentIdAndCRFVersionId(parentId, ecb.getCRFVersionId());
ItemDataDAO iddao = new ItemDataDAO(getDataSource(), locale);
ItemFormMetadataDAO ifmdao = new ItemFormMetadataDAO(getDataSource());
for (int i = 0; i < childItemBeans.size(); i++) {
ItemBean child = (ItemBean) childItemBeans.get(i);
ItemDataBean data = iddao.findByItemIdAndEventCRFId(child.getId(), ecb.getId());
ItemFormMetadataBean metadata = ifmdao.findByItemIdAndCRFVersionId(child.getId(), ecb.getCRFVersionId());
DisplayItemBean dib = new DisplayItemBean();
dib.setEventDefinitionCRF(edcb);
dib.setItem(child);
// tbh
if (!getServletPage(request).equals(Page.DOUBLE_DATA_ENTRY_SERVLET)) {
dib.setData(data);
}
// <<tbh 07/2009, bug #3883
// ItemDataBean dbData = iddao.findByItemIdAndEventCRFIdAndOrdinal(itemId, eventCRFId, ordinal)
dib.setDbData(data);
boolean showItem = getItemMetadataService().isShown(metadata.getItemId(), ecb, data);
if (getServletPage(request).equals(Page.DOUBLE_DATA_ENTRY_SERVLET)) {
showItem = getItemMetadataService().hasPassedDDE(metadata, ecb, data);
}
// boolean passedDDE = getItemMetadataService().hasPassedDDE(data);
if (showItem) {
LOGGER.debug("set show item: " + metadata.getItemId() + " data " + data.getId());
// metadata.setShowItem(showItem);
metadata.setShowItem(true);
}
// logger.debug("did not catch NPE");
dib.setMetadata(metadata);
if (shouldLoadDBValues(dib)) {
LOGGER.trace("should load db values is true, set value");
dib.loadDBValue();
LOGGER.trace("just loaded the child value: " + dib.getData().getValue());
}
answer.add(dib);
}
// this is a pretty slow and memory intensive way to sort... see if we
// can
// have the db do this instead
Collections.sort(answer);
return answer;
}
use of org.akaza.openclinica.dao.submit.ItemDAO in project OpenClinica by OpenClinica.
the class DataEntryServlet method getDisplayBean.
/**
* Retrieve the DisplaySectionBean which will be used to display the Event CRF Section on the JSP, and also is used to controll processRequest.
* @param request TODO
* @param isSubmitted TODO
*/
protected DisplaySectionBean getDisplayBean(boolean hasGroup, boolean includeUngroupedItems, HttpServletRequest request, boolean isSubmitted) throws Exception {
DisplaySectionBean section = new DisplaySectionBean();
FormProcessor fp = new FormProcessor(request);
HttpSession session = request.getSession();
Locale loc = this.locale == null ? LocaleResolver.getLocale(request) : this.locale;
StudyBean study = (StudyBean) session.getAttribute("study");
SessionManager sm = (SessionManager) request.getSession().getAttribute("sm");
EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
SectionBean sb = (SectionBean) request.getAttribute(SECTION_BEAN);
EventDefinitionCRFBean edcb = (EventDefinitionCRFBean) request.getAttribute(EVENT_DEF_CRF_BEAN);
SectionDAO sdao;
// Find out whether there are ungrouped items in this section
boolean hasUngroupedItems = false;
int eventDefinitionCRFId = fp.getInt("eventDefinitionCRFId");
if (eventDefinitionCRFId <= 0) {
// TODO: this block of code repeats
// many times, need to clean up
//synchronized(this)
{
EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(getDataSource());
EventDefinitionCRFBean edcBean = edcdao.findByStudyEventIdAndCRFVersionId(study, ecb.getStudyEventId(), ecb.getCRFVersionId());
eventDefinitionCRFId = edcBean.getId();
}
}
LOGGER.trace("eventDefinitionCRFId " + eventDefinitionCRFId);
// Use this class to find out whether there are ungrouped items in this
// section
FormBeanUtil formBeanUtil = new FormBeanUtil();
List<DisplayItemGroupBean> itemGroups = new ArrayList<DisplayItemGroupBean>();
if (hasGroup) {
DisplaySectionBean newDisplayBean = new DisplaySectionBean();
if (includeUngroupedItems) {
// Null values: this method adds null values to the
// displayitembeans
newDisplayBean = formBeanUtil.createDisplaySectionBWithFormGroups(sb.getId(), ecb.getCRFVersionId(), getDataSource(), eventDefinitionCRFId, ecb, getServletContext());
} else {
newDisplayBean = formBeanUtil.createDisplaySectionWithItemGroups(study, sb.getId(), ecb, ecb.getStudyEventId(), sm, eventDefinitionCRFId, getServletContext());
}
itemGroups = newDisplayBean.getDisplayFormGroups();
// setDataForDisplayItemGroups(itemGroups, sb,ecb,sm);
LOGGER.trace("found item group size: " + itemGroups.size() + " and to string: " + itemGroups.toString());
section.setDisplayFormGroups(itemGroups);
}
// Find out whether any display items are *not* grouped; see issue 1689
hasUngroupedItems = formBeanUtil.sectionHasUngroupedItems(getDataSource(), sb.getId(), itemGroups);
sdao = new SectionDAO(getDataSource());
//
sb.setHasSCDItem(hasUngroupedItems ? sdao.hasSCDItem(sb.getId()) : false);
section.setEventCRF(ecb);
if (sb.getParentId() > 0) {
SectionBean parent = (SectionBean) sdao.findByPK(sb.getParentId());
sb.setParent(parent);
}
section.setSection(sb);
CRFVersionDAO cvdao = new CRFVersionDAO(getDataSource());
CRFVersionBean cvb = (CRFVersionBean) cvdao.findByPK(ecb.getCRFVersionId());
section.setCrfVersion(cvb);
CRFDAO cdao = new CRFDAO(getDataSource());
CRFBean cb = (CRFBean) cdao.findByPK(cvb.getCrfId());
section.setCrf(cb);
EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(getDataSource());
// EventDefinitionCRFBean edcb =
// edcdao.findByStudyEventIdAndCRFVersionId(study,
// ecb.getStudyEventId(), cvb.getId());
section.setEventDefinitionCRF(edcb);
// setup DAO's here to avoid creating too many objects
ItemDAO idao = new ItemDAO(getDataSource());
ItemFormMetadataDAO ifmdao = new ItemFormMetadataDAO(getDataSource());
ItemDataDAO iddao = new ItemDataDAO(getDataSource(), loc);
// Use itemGroups to determine if there are any ungrouped items
// get all the parent display item beans not in group
logMe("Entering getParentDisplayItems::: Thread is? " + Thread.currentThread());
ArrayList displayItems = getParentDisplayItems(hasGroup, sb, edcb, idao, ifmdao, iddao, hasUngroupedItems, request);
logMe("Entering getParentDisplayItems::: Done and Thread is? " + Thread.currentThread());
LOGGER.debug("just ran get parent display, has group " + hasGroup + " has ungrouped " + hasUngroupedItems);
// now sort them by ordinal,
//JN: Commenting out this logic, its wrong and will give erroneous results.
Collections.sort(displayItems);
// now get the child DisplayItemBeans
for (int i = 0; i < displayItems.size(); i++) {
DisplayItemBean dib = (DisplayItemBean) displayItems.get(i);
dib.setChildren(getChildrenDisplayItems(dib, edcb, request));
//
if (ecb.getStage() == DataEntryStage.INITIAL_DATA_ENTRY_COMPLETE || ecb.getStage() == DataEntryStage.DOUBLE_DATA_ENTRY_COMPLETE) {
if (shouldLoadDBValues(dib) && !isSubmitted) {
dib.loadDBValue();
}
} else {
if (shouldLoadDBValues(dib)) {
LOGGER.trace("should load db values is true, set value");
dib.loadDBValue();
LOGGER.trace("just got data loaded: " + dib.getData().getValue());
}
}
displayItems.set(i, dib);
}
section.setItems(displayItems);
return section;
}
use of org.akaza.openclinica.dao.submit.ItemDAO in project OpenClinica by OpenClinica.
the class ViewDiscrepancyNoteServlet method processRequest.
@Override
@SuppressWarnings("unchecked")
protected void processRequest() throws Exception {
FormProcessor fp = new FormProcessor(request);
int eventCRFId = fp.getInt(CreateDiscrepancyNoteServlet.EVENT_CRF_ID);
request.setAttribute(CreateDiscrepancyNoteServlet.EVENT_CRF_ID, new Integer(eventCRFId));
request.setAttribute(DIS_TYPES, DiscrepancyNoteType.list);
if (currentRole.getRole().equals(Role.RESEARCHASSISTANT) || currentRole.getRole().equals(Role.RESEARCHASSISTANT2) || currentRole.getRole().equals(Role.INVESTIGATOR)) {
ArrayList<ResolutionStatus> resStatuses = new ArrayList();
resStatuses.add(ResolutionStatus.UPDATED);
resStatuses.add(ResolutionStatus.RESOLVED);
request.setAttribute(RES_STATUSES, resStatuses);
// it's for parentDNId is null or 0
request.setAttribute(WHICH_RES_STATUSES, "22");
ArrayList<ResolutionStatus> resStatuses2 = new ArrayList<ResolutionStatus>();
resStatuses2.add(ResolutionStatus.OPEN);
resStatuses2.add(ResolutionStatus.RESOLVED);
request.setAttribute(RES_STATUSES2, resStatuses2);
List<DiscrepancyNoteType> types2 = new ArrayList<DiscrepancyNoteType>(DiscrepancyNoteType.list);
types2.remove(DiscrepancyNoteType.QUERY);
request.setAttribute(DIS_TYPES2, types2);
} else if (currentRole.getRole().equals(Role.MONITOR)) {
ArrayList<ResolutionStatus> resStatuses = new ArrayList();
resStatuses.add(ResolutionStatus.OPEN);
resStatuses.add(ResolutionStatus.UPDATED);
resStatuses.add(ResolutionStatus.CLOSED);
request.setAttribute(RES_STATUSES, resStatuses);
request.setAttribute(WHICH_RES_STATUSES, "1");
ArrayList<DiscrepancyNoteType> types2 = new ArrayList<DiscrepancyNoteType>();
types2.add(DiscrepancyNoteType.QUERY);
request.setAttribute(DIS_TYPES2, types2);
} else {
// Role.STUDYDIRECTOR Role.COORDINATOR
List<ResolutionStatus> resStatuses = new ArrayList<ResolutionStatus>(ResolutionStatus.list);
resStatuses.remove(ResolutionStatus.NOT_APPLICABLE);
request.setAttribute(RES_STATUSES, resStatuses);
;
// it's for parentDNId is null or 0 and FVC
request.setAttribute(WHICH_RES_STATUSES, "2");
ArrayList<ResolutionStatus> resStatuses2 = new ArrayList<ResolutionStatus>();
resStatuses2.add(ResolutionStatus.OPEN);
resStatuses2.add(ResolutionStatus.RESOLVED);
request.setAttribute(RES_STATUSES2, resStatuses2);
}
// logic from CreateDiscrepancyNoteServlet
request.setAttribute("unlock", "0");
fp.getBoolean(IS_REASON_FOR_CHANGE);
fp.getBoolean(ERROR_FLAG);
String monitor = fp.getString("monitor");
// } else if ("1".equalsIgnoreCase(monitor)) {// change to allow user to
if ("1".equalsIgnoreCase(monitor)) {
// change to allow user to
// enter note for all items,
// not just blank items
request.setAttribute(CAN_MONITOR, "1");
request.setAttribute("monitor", monitor);
} else {
request.setAttribute(CAN_MONITOR, "0");
}
Boolean fromBox = fp.getBoolean(FROM_BOX);
if (fromBox == null || !fromBox) {
session.removeAttribute(BOX_TO_SHOW);
session.removeAttribute(BOX_DN_MAP);
session.removeAttribute(AUTOVIEWS);
}
Boolean refresh = fp.getBoolean("refresh");
request.setAttribute("refresh", refresh + "");
String ypos = fp.getString("y");
if (ypos == null || ypos.length() == 0) {
ypos = "0";
}
request.setAttribute("y", ypos);
DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(sm.getDataSource());
int entityId = fp.getInt(ENTITY_ID, true);
String name = fp.getString(ENTITY_TYPE, true);
String column = fp.getString(ENTITY_COLUMN, true);
String field = fp.getString(ENTITY_FIELD, true);
String isLocked = fp.getString(LOCKED_FLAG);
if (!StringUtil.isBlank(isLocked) && "yes".equalsIgnoreCase(isLocked)) {
request.setAttribute(LOCKED_FLAG, "yes");
} else {
request.setAttribute(LOCKED_FLAG, "no");
}
DateFormat dateFormatter = DateFormat.getDateInstance(DateFormat.DEFAULT, locale);
int subjectId = fp.getInt(CreateDiscrepancyNoteServlet.SUBJECT_ID, true);
int itemId = fp.getInt(CreateDiscrepancyNoteServlet.ITEM_ID, true);
StudySubjectBean ssub = new StudySubjectBean();
if (subjectId > 0) {
StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
ssub = (StudySubjectBean) ssdao.findByPK(subjectId);
request.setAttribute("noteSubject", ssub);
}
ItemBean item = new ItemBean();
if (itemId > 0) {
ItemDAO idao = new ItemDAO(sm.getDataSource());
item = (ItemBean) idao.findByPK(itemId);
request.setAttribute("item", item);
request.setAttribute("entityName", item.getName());
}
ItemDataBean itemData = new ItemDataBean();
SimpleDateFormat sdf = new SimpleDateFormat("dd-MMM-yyyy");
int preUserId = 0;
if (!StringUtil.isBlank(name)) {
if ("itemData".equalsIgnoreCase(name)) {
ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
itemData = (ItemDataBean) iddao.findByPK(entityId);
request.setAttribute("entityValue", itemData.getValue());
request.setAttribute("entityName", item.getName());
EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
EventCRFBean ec = (EventCRFBean) ecdao.findByPK(itemData.getEventCRFId());
preUserId = ec.getOwnerId() > 0 ? ec.getOwnerId() : 0;
request.setAttribute("entityCreatedDate", sdf.format(ec.getCreatedDate()));
StudyEventDAO sed = new StudyEventDAO(sm.getDataSource());
StudyEventBean se = (StudyEventBean) sed.findByPK(ec.getStudyEventId());
StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
StudyEventDefinitionBean sedb = (StudyEventDefinitionBean) seddao.findByPK(se.getStudyEventDefinitionId());
se.setName(sedb.getName());
request.setAttribute("studyEvent", se);
CRFVersionDAO cvdao = new CRFVersionDAO(sm.getDataSource());
CRFVersionBean cv = (CRFVersionBean) cvdao.findByPK(ec.getCRFVersionId());
CRFDAO cdao = new CRFDAO(sm.getDataSource());
CRFBean crf = (CRFBean) cdao.findByPK(cv.getCrfId());
request.setAttribute("crf", crf);
} else if ("studySub".equalsIgnoreCase(name)) {
StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
ssub = (StudySubjectBean) ssdao.findByPK(entityId);
SubjectDAO sdao = new SubjectDAO(sm.getDataSource());
SubjectBean sub = (SubjectBean) sdao.findByPK(ssub.getSubjectId());
request.setAttribute("noteSubject", ssub);
if (!StringUtil.isBlank(column)) {
if ("enrollment_date".equalsIgnoreCase(column)) {
if (ssub.getEnrollmentDate() != null) {
request.setAttribute("entityValue", dateFormatter.format(ssub.getEnrollmentDate()));
}
request.setAttribute("entityName", resword.getString("enrollment_date"));
} else if ("gender".equalsIgnoreCase(column)) {
request.setAttribute("entityValue", sub.getGender() + "");
request.setAttribute("entityName", resword.getString("gender"));
} else if ("date_of_birth".equalsIgnoreCase(column)) {
if (sub.getDateOfBirth() != null) {
request.setAttribute("entityValue", dateFormatter.format(sub.getDateOfBirth()));
}
request.setAttribute("entityName", resword.getString("date_of_birth"));
} else if ("unique_identifier".equalsIgnoreCase(column)) {
if (sub.getUniqueIdentifier() != null) {
request.setAttribute("entityValue", sub.getUniqueIdentifier());
}
request.setAttribute("entityName", resword.getString("unique_identifier"));
}
}
preUserId = ssub.getOwnerId() > 0 ? ssub.getOwnerId() : 0;
request.setAttribute("entityCreatedDate", sdf.format(ssub.getCreatedDate()));
} else if ("subject".equalsIgnoreCase(name)) {
SubjectDAO sdao = new SubjectDAO(sm.getDataSource());
SubjectBean sub = (SubjectBean) sdao.findByPK(entityId);
// be caution: here for subject, noteSubject is SubjectBean and
// label is unique_identifier
sub.setLabel(sub.getUniqueIdentifier());
request.setAttribute("noteSubject", sub);
if (!StringUtil.isBlank(column)) {
if ("gender".equalsIgnoreCase(column)) {
request.setAttribute("entityValue", ssub.getGender() + "");
request.setAttribute("entityName", resword.getString("gender"));
} else if ("date_of_birth".equalsIgnoreCase(column)) {
if (sub.getDateOfBirth() != null) {
request.setAttribute("entityValue", dateFormatter.format(sub.getDateOfBirth()));
}
request.setAttribute("entityName", resword.getString("date_of_birth"));
} else if ("unique_identifier".equalsIgnoreCase(column)) {
request.setAttribute("entityValue", sub.getUniqueIdentifier());
request.setAttribute("entityName", resword.getString("unique_identifier"));
}
}
preUserId = sub.getOwnerId() > 0 ? sub.getOwnerId() : 0;
request.setAttribute("entityCreatedDate", sdf.format(sub.getCreatedDate()));
} else if ("studyEvent".equalsIgnoreCase(name)) {
StudyEventDAO sed = new StudyEventDAO(sm.getDataSource());
StudyEventBean se = (StudyEventBean) sed.findByPK(entityId);
StudyEventDefinitionDAO seddao = new StudyEventDefinitionDAO(sm.getDataSource());
StudyEventDefinitionBean sedb = (StudyEventDefinitionBean) seddao.findByPK(se.getStudyEventDefinitionId());
se.setName(sedb.getName());
request.setAttribute("studyEvent", se);
request.setAttribute("noteSubject", new StudySubjectDAO(sm.getDataSource()).findByPK(se.getStudySubjectId()));
if (!StringUtil.isBlank(column)) {
if ("location".equalsIgnoreCase(column)) {
request.setAttribute("entityValue", se.getLocation());
request.setAttribute("entityName", resword.getString("location"));
} else if ("start_date".equalsIgnoreCase(column)) {
if (se.getDateStarted() != null) {
request.setAttribute("entityValue", dateFormatter.format(se.getDateStarted()));
}
request.setAttribute("entityName", resword.getString("start_date"));
} else if ("end_date".equalsIgnoreCase(column)) {
if (se.getDateEnded() != null) {
request.setAttribute("entityValue", dateFormatter.format(se.getDateEnded()));
}
request.setAttribute("entityName", resword.getString("end_date"));
}
}
preUserId = se.getOwnerId() > 0 ? se.getOwnerId() : 0;
request.setAttribute("entityCreatedDate", sdf.format(se.getCreatedDate()));
} else if ("eventCrf".equalsIgnoreCase(name)) {
EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
EventCRFBean ec = (EventCRFBean) ecdao.findByPK(entityId);
if (!StringUtil.isBlank(column)) {
if ("date_interviewed".equals(column)) {
if (ec.getDateInterviewed() != null) {
request.setAttribute("entityValue", dateFormatter.format(ec.getDateInterviewed()));
}
request.setAttribute("entityName", resword.getString("date_interviewed"));
} else if ("interviewer_name".equals(column)) {
request.setAttribute("entityValue", ec.getInterviewerName());
request.setAttribute("entityName", resword.getString("interviewer_name"));
}
}
setupStudyEventCRFAttributes(ec);
preUserId = ec.getOwnerId() > 0 ? ec.getOwnerId() : 0;
request.setAttribute("entityCreatedDate", sdf.format(ec.getCreatedDate()));
}
}
boolean writeToDB = fp.getBoolean(CreateDiscrepancyNoteServlet.WRITE_TO_DB, true);
HashMap<Integer, Integer> autoviews = (HashMap<Integer, Integer>) session.getAttribute(AUTOVIEWS);
autoviews = autoviews == null ? new HashMap<Integer, Integer>() : autoviews;
HashMap<Integer, DiscrepancyNoteBean> boxDNMap = (HashMap<Integer, DiscrepancyNoteBean>) session.getAttribute(BOX_DN_MAP);
if (boxDNMap == null || !boxDNMap.containsKey(0)) {
boxDNMap = new HashMap<Integer, DiscrepancyNoteBean>();
// initialize dn for a new thread
DiscrepancyNoteBean dnb = new DiscrepancyNoteBean();
if (currentRole.getRole().equals(Role.RESEARCHASSISTANT) || currentRole.getRole().equals(Role.RESEARCHASSISTANT2) || currentRole.getRole().equals(Role.INVESTIGATOR)) {
dnb.setDiscrepancyNoteTypeId(DiscrepancyNoteType.ANNOTATION.getId());
dnb.setResolutionStatusId(ResolutionStatus.NOT_APPLICABLE.getId());
autoviews.put(0, 0);
// request.setAttribute("autoView", "0");
} else {
dnb.setDiscrepancyNoteTypeId(DiscrepancyNoteType.QUERY.getId());
dnb.setAssignedUserId(preUserId);
autoviews.put(0, 1);
// request.setAttribute("autoView", "1");
}
boxDNMap.put(0, dnb);
} else if (boxDNMap.containsKey(0)) {
int dnTypeId = boxDNMap.get(0).getDiscrepancyNoteTypeId();
autoviews.put(0, dnTypeId == 3 ? 1 : 0);
}
if (boxDNMap.containsKey(0)) {
int dnTypeId0 = boxDNMap.get(0).getDiscrepancyNoteTypeId();
if (dnTypeId0 == 2 || dnTypeId0 == 4) {
request.setAttribute("typeID0", dnTypeId0 + "");
}
}
// request.setAttribute("enterData", enterData);
request.setAttribute("monitor", monitor);
request.setAttribute(ENTITY_ID, entityId + "");
request.setAttribute(ENTITY_TYPE, name);
request.setAttribute(ENTITY_FIELD, field);
request.setAttribute(ENTITY_COLUMN, column);
request.setAttribute(CreateDiscrepancyNoteServlet.WRITE_TO_DB, writeToDB ? "1" : "0");
ArrayList notes = (ArrayList) dndao.findAllByEntityAndColumn(name, entityId, column);
if (notes.size() > 0) {
notes.get(0);
// @pgawade 21-May-2011 Corrected the condition to throw no access
// error
StudyDAO studyDAO = new StudyDAO(sm.getDataSource());
int parentStudyForNoteSub = 0;
// @pgawade #9801: 07-June-2011 corrected the way to get study
// subject id associated with discrepancy note
// int noteSubId = note.getOwnerId();
StudySubjectDAO ssdao = new StudySubjectDAO(sm.getDataSource());
// StudySubjectBean notessub = (StudySubjectBean)
// ssdao.findByPK(noteSubId);
StudySubjectBean notessub = (StudySubjectBean) ssdao.findByPK(subjectId);
StudyBean studyBeanSub = (StudyBean) studyDAO.findByPK(notessub.getStudyId());
if (null != studyBeanSub) {
parentStudyForNoteSub = studyBeanSub.getParentStudyId();
}
if (notessub.getStudyId() != currentStudy.getId() && currentStudy.getId() != parentStudyForNoteSub) {
addPageMessage(noAccessMessage);
throw new InsufficientPermissionException(Page.MENU_SERVLET, exceptionName, "1");
}
}
FormDiscrepancyNotes newNotes = (FormDiscrepancyNotes) session.getAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME);
Map<Integer, DiscrepancyNoteBean> noteTree = new LinkedHashMap<Integer, DiscrepancyNoteBean>();
String session_key = eventCRFId + "_" + field;
ArrayList newFieldNotes = null;
if (newNotes != null && (!newNotes.getNotes(field).isEmpty() || !newNotes.getNotes(session_key).isEmpty())) {
newFieldNotes = newNotes.getNotes(field);
if (newFieldNotes == null || newFieldNotes.size() == 0) {
newFieldNotes = newNotes.getNotes(session_key);
}
// System.out.println("how many notes:" + newFieldNotes.size());
for (int i = 0; i < newFieldNotes.size(); i++) {
DiscrepancyNoteBean note = (DiscrepancyNoteBean) newFieldNotes.get(i);
note.setLastUpdator(ub);
note.setLastDateUpdated(new Date());
note.setDisType(DiscrepancyNoteType.get(note.getDiscrepancyNoteTypeId()));
note.setResStatus(ResolutionStatus.get(note.getResolutionStatusId()));
note.setSaved(false);
if (itemId > 0) {
note.setEntityName(item.getName());
note.setEntityValue(itemData.getValue());
}
note.setSubjectName(ssub.getName());
note.setEntityType(name);
int pId = note.getParentDnId();
if (pId == 0) {
// we can only keep one unsaved note because
// note.id == 0
noteTree.put(note.getId(), note);
}
}
for (int i = 0; i < newFieldNotes.size(); i++) {
DiscrepancyNoteBean note = (DiscrepancyNoteBean) newFieldNotes.get(i);
int pId = note.getParentDnId();
if (pId > 0) {
note.setSaved(false);
note.setLastUpdator(ub);
note.setLastDateUpdated(new Date());
note.setEntityName(item.getName());
note.setSubjectName(ssub.getName());
note.setEntityType(name);
note.setDisType(DiscrepancyNoteType.get(note.getDiscrepancyNoteTypeId()));
note.setResStatus(ResolutionStatus.get(note.getResolutionStatusId()));
DiscrepancyNoteBean parent = noteTree.get(new Integer(pId));
if (parent != null) {
parent.getChildren().add(note);
}
}
}
}
UserAccountDAO udao = new UserAccountDAO(sm.getDataSource());
HashMap<Integer, String> fvcInitAssigns = new HashMap<Integer, String>();
for (int i = 0; i < notes.size(); i++) {
DiscrepancyNoteBean note = (DiscrepancyNoteBean) notes.get(i);
note.setColumn(column);
note.setEntityId(entityId);
note.setEntityType(name);
note.setField(field);
Date lastUpdatedDate = note.getCreatedDate();
UserAccountBean lastUpdator = (UserAccountBean) udao.findByPK(note.getOwnerId());
note.setLastUpdator(lastUpdator);
note.setLastDateUpdated(lastUpdatedDate);
int pId = note.getParentDnId();
note.setDisType(DiscrepancyNoteType.get(note.getDiscrepancyNoteTypeId()));
note.setResStatus(ResolutionStatus.get(note.getResolutionStatusId()));
if (pId == 0) {
noteTree.put(new Integer(note.getId()), note);
}
}
for (int i = 0; i < notes.size(); i++) {
DiscrepancyNoteBean note = (DiscrepancyNoteBean) notes.get(i);
int pId = note.getParentDnId();
if (itemId > 0) {
note.setEntityName(item.getName());
note.setEntityValue(itemData.getValue());
}
note.setSubjectName(ssub.getName());
note.setEntityType(name);
Date lastUpdatedDate = note.getCreatedDate();
UserAccountBean lastUpdator = (UserAccountBean) udao.findByPK(note.getOwnerId());
note.setLastUpdator(lastUpdator);
note.setLastDateUpdated(lastUpdatedDate);
note.setDisType(DiscrepancyNoteType.get(note.getDiscrepancyNoteTypeId()));
note.setResStatus(ResolutionStatus.get(note.getResolutionStatusId()));
if (pId > 0) {
DiscrepancyNoteBean parent = noteTree.get(new Integer(pId));
if (parent != null) {
parent.getChildren().add(note);
if (!note.getCreatedDate().before(parent.getLastDateUpdated())) {
parent.setLastDateUpdated(note.getCreatedDate());
}
if (note.getDiscrepancyNoteTypeId() == 1 && note.getAssignedUserId() > 0) {
int ownerId = note.getOwnerId();
if (fvcInitAssigns.containsKey(pId)) {
String f = fvcInitAssigns.get(pId);
String fn = note.getId() + "." + ownerId;
if (fn.compareTo(f) < 0) {
fvcInitAssigns.put(pId, fn);
}
} else {
fvcInitAssigns.put(pId, note.getId() + "." + ownerId);
}
}
}
}
}
Set parents = noteTree.keySet();
Iterator it = parents.iterator();
while (it.hasNext()) {
Integer key = (Integer) it.next();
DiscrepancyNoteBean note = noteTree.get(key);
note.setNumChildren(note.getChildren().size());
note.setEntityType(name);
if (!boxDNMap.containsKey(key)) {
DiscrepancyNoteBean dn = new DiscrepancyNoteBean();
dn.setId(key);
int dnTypeId = note.getDiscrepancyNoteTypeId();
dn.setDiscrepancyNoteTypeId(dnTypeId);
if (dnTypeId == 3) {
// JsonQuery
dn.setAssignedUserId(note.getOwnerId());
} else if (dnTypeId == 1) {
// FVC
if (fvcInitAssigns.containsKey(key)) {
String[] s = fvcInitAssigns.get(key).split("\\.");
int i = Integer.parseInt(s.length == 2 ? s[1].trim() : "0");
dn.setAssignedUserId(i);
}
}
Role r = currentRole.getRole();
// currentStudy.getId() != currentStudy.getParentStudyId()) {
if (r.equals(Role.RESEARCHASSISTANT) || r.equals(Role.RESEARCHASSISTANT2) || r.equals(Role.INVESTIGATOR)) {
if (dn.getDiscrepancyNoteTypeId() == DiscrepancyNoteType.QUERY.getId() && note.getResStatus().getId() == ResolutionStatus.UPDATED.getId()) {
dn.setResolutionStatusId(ResolutionStatus.UPDATED.getId());
} else {
dn.setResolutionStatusId(ResolutionStatus.RESOLVED.getId());
}
if (dn.getAssignedUserId() > 0) {
autoviews.put(key, 1);
} else {
autoviews.put(key, 0);
}
// copied from CreateDiscrepancyNoteServlet
// request.setAttribute("autoView", "0");
// hide the panel, tbh
} else {
if (note.getResStatus().getId() == ResolutionStatus.RESOLVED.getId()) {
dn.setResolutionStatusId(ResolutionStatus.CLOSED.getId());
} else if (note.getResStatus().getId() == ResolutionStatus.CLOSED.getId()) {
dn.setResolutionStatusId(ResolutionStatus.UPDATED.getId());
} else if (r.equals(Role.MONITOR)) {
dn.setResolutionStatusId(ResolutionStatus.UPDATED.getId());
} else if (dn.getDiscrepancyNoteTypeId() == 1) {
dn.setResolutionStatusId(ResolutionStatus.RESOLVED.getId());
} else {
dn.setResolutionStatusId(ResolutionStatus.UPDATED.getId());
}
autoviews.put(key, 1);
if (dn.getAssignedUserId() > 0) {
} else {
dn.setAssignedUserId(preUserId);
}
}
boxDNMap.put(key, dn);
}
}
session.setAttribute(BOX_DN_MAP, boxDNMap);
session.setAttribute(AUTOVIEWS, autoviews);
// noteTree is a Hashmap mapping note id to a parent note, with all the
// child notes
// stored in the children List.
// BWP 3029>>make sure the parent note has an updated resolution status
// and
// updated date
fixStatusUpdatedDate(noteTree);
request.setAttribute(DIS_NOTES, noteTree);
// copied from CreatediscrepancyNoteServlet generateUserAccounts
StudyDAO studyDAO = new StudyDAO(sm.getDataSource());
StudyBean subjectStudy = studyDAO.findByStudySubjectId(subjectId);
int studyId = currentStudy.getId();
ArrayList<UserAccountBean> userAccounts = new ArrayList();
if (currentStudy.getParentStudyId() > 0) {
userAccounts = udao.findAllUsersByStudyOrSite(studyId, currentStudy.getParentStudyId(), subjectId);
} else if (subjectStudy.getParentStudyId() > 0) {
userAccounts = udao.findAllUsersByStudyOrSite(subjectStudy.getId(), subjectStudy.getParentStudyId(), subjectId);
} else {
userAccounts = udao.findAllUsersByStudyOrSite(studyId, 0, subjectId);
}
request.setAttribute(USER_ACCOUNTS, userAccounts);
request.setAttribute(VIEW_DN_LINK, this.getPageServletFileName());
// audit log items (from ViewItemAuditLogServlet.java)
AuditDAO adao = new AuditDAO(sm.getDataSource());
if (name.equalsIgnoreCase("studysub")) {
name = "study_subject";
} else if (name.equalsIgnoreCase("eventcrf")) {
name = "event_crf";
} else if (name.equalsIgnoreCase("studyevent")) {
name = "study_event";
} else if (name.equalsIgnoreCase("itemdata")) {
name = "item_data";
}
ArrayList itemAuditEvents = adao.findItemAuditEvents(entityId, name);
request.setAttribute("itemAudits", itemAuditEvents);
forwardPage(Page.VIEW_DISCREPANCY_NOTE);
}
use of org.akaza.openclinica.dao.submit.ItemDAO in project OpenClinica by OpenClinica.
the class UrlRewriteServlet method getOpenClinicaResourceFromURL.
/**
* Method to parse the request URL parameters and get the respective
* database identifiers
*
* @param URLPath
* - example "S_CPCS/320999/SE_CPCS%5B1%5D/F_CPCS_1"
* @param queryString
* - example
* "format=html&mode=view&tabId=1&exitTo=ViewStudySubject"
* @return
*/
public OpenClinicaResource getOpenClinicaResourceFromURL(String URLPath) /*
* ,
* String
* queryString
*/
{
OpenClinicaResource openClinicaResource = new OpenClinicaResource();
if ((null != URLPath) && (!URLPath.equals(""))) {
if (URLPath.contains("/")) {
String[] tokens = URLPath.split("/");
if (tokens.length != 0) {
String URLParamValue = "";
StudyDAO stdao = new StudyDAO(getDataSource());
StudySubjectDAO ssubdao = new StudySubjectDAO(getDataSource());
StudyEventDefinitionDAO sedefdao = new StudyEventDefinitionDAO(getDataSource());
CRFDAO crfdao = new CRFDAO(getDataSource());
CRFVersionDAO crfvdao = new CRFVersionDAO(getDataSource());
ItemDAO idao = new ItemDAO(getDataSource());
ItemGroupDAO igdao = new ItemGroupDAO(getDataSource());
StudyEventDAO sedao = new StudyEventDAO(getDataSource());
StudyBean study = null;
StudySubjectBean subject = null;
StudyEventDefinitionBean sed = null;
CRFBean c = null;
CRFVersionBean cv = null;
ItemBean item = null;
ItemGroupBean ig = null;
StudyEventBean studyEvent = null;
Integer studySubjectId = 0;
Integer eventDefId = 0;
Integer eventRepeatKey = 0;
for (int i = 0; i < tokens.length; i++) {
// when interpreting these request URL parameters, the
// assumption is that the position of
// each type of parameters will be fixed. Meaning, study
// OID is always going to be at the start
// followed by StudySubjectKey followed by study event
// definition OID followed by
// study event repeat key followed by form OID followed
// by item group OID followed by
// item group repeat key followed by item OID
// It can also be done based on the start of OID value
// (example study OID presently
// starts with 'S_' but we will have to change it if we
// change the method of generating
// oID values in future.
URLParamValue = tokens[i].trim();
//System.out.println("URLParamValue::"+URLParamValue);
logger.info("URLPAramValue::" + URLParamValue);
if ((null != URLParamValue) && (!URLParamValue.equals(""))) {
switch(i) {
case 0:
{
// study OID
study = stdao.findByOid(URLParamValue);
//validate study OID
if (study == null) {
openClinicaResource.setInValid(true);
openClinicaResource.getMessages().add(resexception.getString("invalid_study_oid"));
return openClinicaResource;
} else {
openClinicaResource.setStudyOID(URLParamValue);
if (null != study) {
openClinicaResource.setStudyID(study.getId());
}
}
break;
}
case 1:
{
// StudySubjectKey
subject = ssubdao.findByOidAndStudy(URLParamValue, study.getId());
//validate subject OID
if (subject == null) {
openClinicaResource.setInValid(true);
openClinicaResource.getMessages().add(resexception.getString("invalid_subject_oid"));
return openClinicaResource;
} else {
openClinicaResource.setStudySubjectOID(URLParamValue);
if (null != subject) {
studySubjectId = subject.getId();
openClinicaResource.setStudySubjectID(studySubjectId);
}
}
break;
}
case 2:
{
// study event definition OID
// separate study event OID and study event
// repeat key
String seoid = "";
String eventOrdinal = "";
if (URLParamValue.contains("%5B") && URLParamValue.contains("%5D")) {
seoid = URLParamValue.substring(0, URLParamValue.indexOf("%5B"));
openClinicaResource.setStudyEventDefOID(seoid);
eventOrdinal = URLParamValue.substring(URLParamValue.indexOf("%5B") + 3, URLParamValue.indexOf("%5D"));
} else if (URLParamValue.contains("[") && URLParamValue.contains("]")) {
seoid = URLParamValue.substring(0, URLParamValue.indexOf("["));
logger.info("seoid" + seoid);
openClinicaResource.setStudyEventDefOID(seoid);
eventOrdinal = URLParamValue.substring(URLParamValue.indexOf("[") + 1, URLParamValue.indexOf("]"));
logger.info("eventOrdinal::" + eventOrdinal);
} else {
//event ordinal not specified
openClinicaResource.setInValid(true);
openClinicaResource.getMessages().add(resexception.getString("event_ordinal_not_specified"));
return openClinicaResource;
}
if ((null != seoid) && (null != study)) {
sed = sedefdao.findByOidAndStudy(seoid, study.getId(), study.getParentStudyId());
//validate study event oid
if (null == sed) {
openClinicaResource.setInValid(true);
openClinicaResource.getMessages().add(resexception.getString("invalid_event_oid"));
return openClinicaResource;
} else {
eventDefId = sed.getId();
openClinicaResource.setStudyEventDefID(eventDefId);
}
}
if (null != eventRepeatKey) {
eventRepeatKey = Integer.parseInt(eventOrdinal.trim());
//validate the event ordinal specified exists in database
studyEvent = (StudyEventBean) sedao.findByStudySubjectIdAndDefinitionIdAndOrdinal(subject.getId(), sed.getId(), eventRepeatKey);
//this method return new StudyEvent (not null) even if no studyEvent can be found
if (null == studyEvent || studyEvent.getId() == 0) {
openClinicaResource.setInValid(true);
openClinicaResource.getMessages().add(resexception.getString("invalid_event_ordinal"));
return openClinicaResource;
} else {
openClinicaResource.setStudyEventRepeatKey(eventRepeatKey);
}
}
break;
}
case 3:
{
// form OID
openClinicaResource.setFormVersionOID(URLParamValue);
//validate the crf version oid
cv = crfvdao.findByOid(URLParamValue);
if (cv == null) {
openClinicaResource.setInValid(true);
openClinicaResource.getMessages().add(resexception.getString("invalid_crf_oid"));
return openClinicaResource;
} else {
openClinicaResource.setFormVersionID(cv.getId());
//validate if crf is removed
if (cv.getStatus().equals(Status.DELETED)) {
openClinicaResource.setInValid(true);
openClinicaResource.getMessages().add(resexception.getString("removed_crf"));
return openClinicaResource;
} else {
if (null != study) {
// cv =
// crfvdao.findByCrfVersionOidAndStudy(URLParamValue,
// study.getId());
// if (null != cv) {
// openClinicaResource.setFormVersionID(cv.getId());
// openClinicaResource.setFormID(cv.getCrfId());
// }
HashMap studySubjectCRFDataDetails = sedao.getStudySubjectCRFData(study, studySubjectId, eventDefId, URLParamValue, eventRepeatKey);
if ((null != studySubjectCRFDataDetails) && (studySubjectCRFDataDetails.size() != 0)) {
if (studySubjectCRFDataDetails.containsKey("event_crf_id")) {
openClinicaResource.setEventCrfId((Integer) studySubjectCRFDataDetails.get("event_crf_id"));
}
if (studySubjectCRFDataDetails.containsKey("event_definition_crf_id")) {
openClinicaResource.setEventDefinitionCrfId((Integer) studySubjectCRFDataDetails.get("event_definition_crf_id"));
}
if (studySubjectCRFDataDetails.containsKey("study_event_id")) {
openClinicaResource.setStudyEventId((Integer) studySubjectCRFDataDetails.get("study_event_id"));
}
} else {
//no data was found in the database for the combination of parameters in the RESTful URL. There are 2 possible reasons:
//a. The data entry is not started yet for this event CRF. As of OpenClinica 3.1.3 we have not implemented the
// RESTful URL functionality in this case.
//b. The form version OID entered in the URL could be different than the one used in the data entry
openClinicaResource.setInValid(true);
openClinicaResource.getMessages().add(resexception.getString("either_no_data_for_crf_or_data_entry_not_started"));
return openClinicaResource;
}
}
}
}
break;
}
case 4:
{
// item group OID
// separate item group OID and item group
// repeat key
String igoid = "";
String igRepeatKey = "";
if (URLParamValue.contains("[")) {
igoid = URLParamValue.substring(1, URLParamValue.indexOf("["));
igRepeatKey = URLParamValue.substring(URLParamValue.indexOf("["), URLParamValue.indexOf("}]"));
}
if ((null != igoid) && (null != cv)) {
ig = igdao.findByOidAndCrf(URLParamValue, cv.getCrfId());
if (null != ig) {
openClinicaResource.setItemGroupID(ig.getId());
}
}
if (null != igRepeatKey) {
openClinicaResource.setItemGroupRepeatKey(Integer.parseInt(igRepeatKey));
}
break;
}
case 5:
{
// item = idao.find
break;
}
}
// switch end
}
}
}
}
}
return openClinicaResource;
}
use of org.akaza.openclinica.dao.submit.ItemDAO in project OpenClinica by OpenClinica.
the class VerifyImportedCRFDataServlet method processRequest.
@Override
@SuppressWarnings(value = "unchecked")
public void processRequest() throws Exception {
ItemDataDAO itemDataDao = new ItemDataDAO(sm.getDataSource());
itemDataDao.setFormatDates(false);
EventCRFDAO eventCrfDao = new EventCRFDAO(sm.getDataSource());
CrfBusinessLogicHelper crfBusinessLogicHelper = new CrfBusinessLogicHelper(sm.getDataSource());
String action = request.getParameter("action");
FormProcessor fp = new FormProcessor(request);
// checks which module the requests are from
String module = fp.getString(MODULE);
request.setAttribute(MODULE, module);
resetPanel();
panel.setStudyInfoShown(false);
panel.setOrderedData(true);
setToPanel(resword.getString("create_CRF"), respage.getString("br_create_new_CRF_entering"));
setToPanel(resword.getString("create_CRF_version"), respage.getString("br_create_new_CRF_uploading"));
setToPanel(resword.getString("revise_CRF_version"), respage.getString("br_if_you_owner_CRF_version"));
setToPanel(resword.getString("CRF_spreadsheet_template"), respage.getString("br_download_blank_CRF_spreadsheet_from"));
setToPanel(resword.getString("example_CRF_br_spreadsheets"), respage.getString("br_download_example_CRF_instructions_from"));
if ("confirm".equalsIgnoreCase(action)) {
List<DisplayItemBeanWrapper> displayItemBeanWrappers = (List<DisplayItemBeanWrapper>) session.getAttribute("importedData");
logger.info("Size of displayItemBeanWrappers : " + displayItemBeanWrappers.size());
forwardPage(Page.VERIFY_IMPORT_CRF_DATA);
}
if ("save".equalsIgnoreCase(action)) {
// setup ruleSets to run if applicable
RuleSetServiceInterface ruleSetService = (RuleSetServiceInterface) SpringServletAccess.getApplicationContext(context).getBean("ruleSetService");
List<ImportDataRuleRunnerContainer> containers = this.ruleRunSetup(sm.getDataSource(), currentStudy, ub, ruleSetService);
List<DisplayItemBeanWrapper> displayItemBeanWrappers = (List<DisplayItemBeanWrapper>) session.getAttribute("importedData");
// System.out.println("Size of displayItemBeanWrappers : " +
// displayItemBeanWrappers.size());
HashMap<Integer, String> importedCRFStatuses = (HashMap<Integer, String>) session.getAttribute("importedCRFStatuses");
for (DisplayItemBeanWrapper wrapper : displayItemBeanWrappers) {
boolean resetSDV = false;
int eventCrfBeanId = -1;
EventCRFBean eventCrfBean = new EventCRFBean();
// TODO : tom , the wrapper object has all the necessary data -
// as you see we check the
// is to see if this data is Savable if it is then we go ahead
// and save it. if not we discard.
// So the change needs to happen here , instead of discarding we
// need to file discrepancy notes
// and save the data. If you look in the
// Page.VERIFY_IMPORT_CRF_DATA jsp file you can see how I am
// pulling the errors. and use that in the same way.
logger.info("right before we check to make sure it is savable: " + wrapper.isSavable());
if (wrapper.isSavable()) {
ArrayList<Integer> eventCrfInts = new ArrayList<Integer>();
// wrapper.getValidationErrors().toString());
for (DisplayItemBean displayItemBean : wrapper.getDisplayItemBeans()) {
eventCrfBeanId = displayItemBean.getData().getEventCRFId();
eventCrfBean = (EventCRFBean) eventCrfDao.findByPK(eventCrfBeanId);
logger.info("found value here: " + displayItemBean.getData().getValue());
logger.info("found status here: " + eventCrfBean.getStatus().getName());
// System.out.println("found event crf bean name here: "
// +
// eventCrfBean.getEventName()+" id "+eventCrfBean.getId
// ());
// SO, items can be created in a wrapper which is set to
// overwrite
// we get around this by checking the bean first, to
// make sure it's not null
ItemDataBean itemDataBean = new ItemDataBean();
itemDataBean = itemDataDao.findByItemIdAndEventCRFIdAndOrdinal(displayItemBean.getItem().getId(), eventCrfBean.getId(), displayItemBean.getData().getOrdinal());
if (wrapper.isOverwrite() && itemDataBean.getStatus() != null) {
if (!itemDataBean.getValue().equals(displayItemBean.getData().getValue()))
resetSDV = true;
logger.info("just tried to find item data bean on item name " + displayItemBean.getItem().getName());
itemDataBean.setUpdatedDate(new Date());
itemDataBean.setUpdater(ub);
itemDataBean.setValue(displayItemBean.getData().getValue());
// set status?
itemDataDao.update(itemDataBean);
logger.info("updated: " + itemDataBean.getItemId());
// need to set pk here in order to create dn
displayItemBean.getData().setId(itemDataBean.getId());
} else {
resetSDV = true;
itemDataDao.create(displayItemBean.getData());
logger.info("created: " + displayItemBean.getData().getItemId() + "event CRF ID = " + eventCrfBean.getId() + "CRF VERSION ID =" + eventCrfBean.getCRFVersionId());
// does this dao function work for repeating
// events/groups?
// ItemDataBean itemDataBean =
// itemDataDao.findByEventCRFIdAndItemName(
// eventCrfBean,
// displayItemBean.getItem().getName());
ItemDataBean itemDataBean2 = itemDataDao.findByItemIdAndEventCRFIdAndOrdinal(displayItemBean.getItem().getId(), eventCrfBean.getId(), displayItemBean.getData().getOrdinal());
logger.info("found: id " + itemDataBean2.getId() + " name " + itemDataBean2.getName());
displayItemBean.getData().setId(itemDataBean2.getId());
}
// logger.info("created item data bean:
// "+displayItemBean.getData().getId());
// logger.info("created:
// "+displayItemBean.getData().getName());
// logger.info("continued:
// "+displayItemBean.getData().getItemId());
ItemDAO idao = new ItemDAO(sm.getDataSource());
ItemBean ibean = (ItemBean) idao.findByPK(displayItemBean.getData().getItemId());
// logger.info("continued2: getName " +
// ibean.getName());
// System.out.println("*** checking for validation errors: "
// + ibean.getName());
String itemOid = displayItemBean.getItem().getOid() + "_" + wrapper.getStudyEventRepeatKey() + "_" + displayItemBean.getData().getOrdinal() + "_" + wrapper.getStudySubjectOid();
if (wrapper.getValidationErrors().containsKey(itemOid)) {
ArrayList messageList = (ArrayList) wrapper.getValidationErrors().get(itemOid);
// could it be more than one? tbh 08/2008
for (int iter = 0; iter < messageList.size(); iter++) {
String message = (String) messageList.get(iter);
DiscrepancyNoteBean parentDn = ImportSpringJob.createDiscrepancyNote(ibean, message, eventCrfBean, displayItemBean, null, ub, sm.getDataSource(), currentStudy);
ImportSpringJob.createDiscrepancyNote(ibean, message, eventCrfBean, displayItemBean, parentDn.getId(), ub, sm.getDataSource(), currentStudy);
// System.out.println("*** created disc note with message: "
// + message);
// displayItemBean);
}
}
// "+displayItemBean.getDbData().getName());
if (!eventCrfInts.contains(new Integer(eventCrfBean.getId()))) {
String eventCRFStatus = importedCRFStatuses.get(new Integer(eventCrfBean.getId()));
if (eventCRFStatus != null && eventCRFStatus.equals(DataEntryStage.INITIAL_DATA_ENTRY.getName()) && eventCrfBean.getStatus().isAvailable()) {
crfBusinessLogicHelper.markCRFStarted(eventCrfBean, ub);
} else {
crfBusinessLogicHelper.markCRFComplete(eventCrfBean, ub);
}
eventCrfInts.add(new Integer(eventCrfBean.getId()));
}
}
// Reset the SDV status if item data has been changed or added
if (eventCrfBean != null && resetSDV)
eventCrfDao.setSDVStatus(false, ub.getId(), eventCrfBean.getId());
// end of item datas, tbh
// crfBusinessLogicHelper.markCRFComplete(eventCrfBean, ub);
// System .out.println("*** just updated event crf bean: "+
// eventCrfBean.getId());
// need to update the study event status as well, tbh
// crfBusinessLogicHelper.updateStudyEvent(eventCrfBean,
// ub);
// above should do it for us, tbh 08/2008
}
}
addPageMessage(respage.getString("data_has_been_successfully_import"));
addPageMessage(this.ruleActionWarnings(this.runRules(currentStudy, ub, containers, ruleSetService, ExecutionMode.SAVE)));
// forwardPage(Page.SUBMIT_DATA_SERVLET);
forwardPage(Page.LIST_STUDY_SUBJECTS_SERVLET);
// replaced tbh, 06/2009
}
}
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