Examples with ItemDataDAO org.akaza.openclinica.dao.submit.ItemDataDAO used on opensource projects

Example 51 with ItemDataDAO

use of org.akaza.openclinica.dao.submit.ItemDataDAO in project OpenClinica by OpenClinica.

the class CreateOneDiscrepancyNoteServlet method processRequest.

@Override
protected void processRequest() throws Exception {
    FormProcessor fp = new FormProcessor(request);
    DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(sm.getDataSource());
    int eventCRFId = fp.getInt(CreateDiscrepancyNoteServlet.EVENT_CRF_ID);
    request.setAttribute(CreateDiscrepancyNoteServlet.EVENT_CRF_ID, new Integer(eventCRFId));
    int parentId = fp.getInt(PARENT_ID);
    DiscrepancyNoteBean parent = parentId > 0 ? (DiscrepancyNoteBean) dndao.findByPK(parentId) : new DiscrepancyNoteBean();
    HashMap<Integer, DiscrepancyNoteBean> boxDNMap = (HashMap<Integer, DiscrepancyNoteBean>) session.getAttribute(BOX_DN_MAP);
    boxDNMap = boxDNMap == null ? new HashMap<Integer, DiscrepancyNoteBean>() : boxDNMap;
    DiscrepancyNoteBean dn = boxDNMap.size() > 0 && boxDNMap.containsKey(Integer.valueOf(parentId)) ? boxDNMap.get(Integer.valueOf(parentId)) : new DiscrepancyNoteBean();
    int entityId = fp.getInt(ENTITY_ID, true);
    entityId = entityId > 0 ? entityId : parent.getEntityId();
    if (entityId == 0) {
        Validator.addError(errors, "newChildAdded" + parentId, respage.getString("note_cannot_be_saved"));
        logger.info("entityId is 0. Note saving can not be started.");
    }
    String entityType = fp.getString(ENTITY_TYPE, true);
    FormDiscrepancyNotes noteTree = (FormDiscrepancyNotes) session.getAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME);
    if (noteTree == null) {
        noteTree = new FormDiscrepancyNotes();
    }
    String ypos = fp.getString("ypos" + parentId);
    int refresh = 0;
    String field = fp.getString(ENTITY_FIELD, true);
    String description = fp.getString("description" + parentId);
    int typeId = fp.getInt("typeId" + parentId);
    String detailedDes = fp.getString("detailedDes" + parentId);
    int resStatusId = fp.getInt(RES_STATUS_ID + parentId);
    int assignedUserAccountId = fp.getInt(SUBMITTED_USER_ACCOUNT_ID + parentId);
    String viewNoteLink = fp.getString("viewDNLink" + parentId);
    viewNoteLink = this.appendPageFileName(viewNoteLink, "fromBox", "1");
    Validator v = new Validator(request);
    v.addValidation("description" + parentId, Validator.NO_BLANKS);
    v.addValidation("description" + parentId, Validator.LENGTH_NUMERIC_COMPARISON, NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO, 255);
    v.addValidation("detailedDes" + parentId, Validator.LENGTH_NUMERIC_COMPARISON, NumericComparisonOperator.LESS_THAN_OR_EQUAL_TO, 1000);
    v.addValidation("typeId" + parentId, Validator.NO_BLANKS);
    HashMap errors = v.validate();
    dn.setParentDnId(parentId);
    dn.setDescription(description);
    dn.setDiscrepancyNoteTypeId(typeId);
    dn.setDetailedNotes(detailedDes);
    dn.setResolutionStatusId(resStatusId);
    if (typeId != DiscrepancyNoteType.ANNOTATION.getId() && typeId != DiscrepancyNoteType.REASON_FOR_CHANGE.getId()) {
        dn.setAssignedUserId(assignedUserAccountId);
    }
    if (DiscrepancyNoteType.ANNOTATION.getId() == dn.getDiscrepancyNoteTypeId()) {
        updateStudyEvent(entityType, entityId);
        updateStudySubjectStatus(entityType, entityId);
    }
    if (DiscrepancyNoteType.ANNOTATION.getId() == dn.getDiscrepancyNoteTypeId() || DiscrepancyNoteType.REASON_FOR_CHANGE.getId() == dn.getDiscrepancyNoteTypeId()) {
        dn.setResStatus(ResolutionStatus.NOT_APPLICABLE);
        dn.setResolutionStatusId(ResolutionStatus.NOT_APPLICABLE.getId());
    }
    if (DiscrepancyNoteType.FAILEDVAL.getId() == dn.getDiscrepancyNoteTypeId() || DiscrepancyNoteType.QUERY.getId() == dn.getDiscrepancyNoteTypeId()) {
        if (ResolutionStatus.NOT_APPLICABLE.getId() == dn.getResolutionStatusId()) {
            Validator.addError(errors, RES_STATUS_ID + parentId, restext.getString("not_valid_res_status"));
        }
    }
    if (errors.isEmpty()) {
        HashMap<String, ArrayList<String>> results = new HashMap<String, ArrayList<String>>();
        ArrayList<String> mess = new ArrayList<String>();
        String column = fp.getString(ENTITY_COLUMN, true);
        dn.setOwner(ub);
        dn.setStudyId(currentStudy.getId());
        dn.setEntityId(entityId);
        dn.setEntityType(entityType);
        dn.setColumn(column);
        dn.setField(field);
        if (parentId > 0) {
            if (dn.getResolutionStatusId() != parent.getResolutionStatusId()) {
                parent.setResolutionStatusId(dn.getResolutionStatusId());
                dndao.update(parent);
                if (!parent.isActive()) {
                    logger.info("Failed to update resolution status ID for the parent dn ID = " + parentId + ". ");
                }
            }
            if (dn.getAssignedUserId() != parent.getAssignedUserId()) {
                parent.setAssignedUserId(dn.getAssignedUserId());
                if (parent.getAssignedUserId() > 0) {
                    dndao.updateAssignedUser(parent);
                } else {
                    dndao.updateAssignedUserToNull(parent);
                }
                if (!parent.isActive()) {
                    logger.info("Failed to update assigned user ID for the parent dn ID= " + parentId + ". ");
                }
            }
        } else {
            ypos = "0";
        }
        dn = (DiscrepancyNoteBean) dndao.create(dn);
        boolean success = dn.getId() > 0 ? true : false;
        if (success) {
            refresh = 1;
            dndao.createMapping(dn);
            success = dndao.isQuerySuccessful();
            if (success == false) {
                mess.add(restext.getString("failed_create_dn_mapping_for_dnId") + dn.getId() + ". ");
            }
            noteTree.addNote(eventCRFId + "_" + field, dn);
            noteTree.addIdNote(dn.getEntityId(), field);
            session.setAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME, noteTree);
            if (dn.getParentDnId() == 0) {
                // see issue 2659 this is a new thread, we will create
                // two notes in this case,
                // This way one can be the parent that updates as the
                // status changes, but one also stays as New.
                dn.setParentDnId(dn.getId());
                dn = (DiscrepancyNoteBean) dndao.create(dn);
                if (dn.getId() > 0) {
                    dndao.createMapping(dn);
                    if (!dndao.isQuerySuccessful()) {
                        mess.add(restext.getString("failed_create_dn_mapping_for_dnId") + dn.getId() + ". ");
                    }
                    noteTree.addNote(eventCRFId + "_" + field, dn);
                    noteTree.addIdNote(dn.getEntityId(), field);
                    session.setAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME, noteTree);
                } else {
                    mess.add(restext.getString("failed_create_child_dn_for_new_parent_dnId") + dn.getId() + ". ");
                }
            }
        } else {
            mess.add(restext.getString("failed_create_new_dn") + ". ");
        }
        if (success) {
            if (boxDNMap.size() > 0 && boxDNMap.containsKey(parentId)) {
                boxDNMap.remove(parentId);
            }
            session.removeAttribute(BOX_TO_SHOW);
            /*
                 * Copied from CreateDiscrepancyNoteServlet
                 * Setting a marker to check
                 * later while saving administrative edited data. This is needed to
                 * make sure the system flags error while changing data for items
                 * which already has a DiscrepanyNote
                 */
            manageReasonForChangeState(session, eventCRFId + "_" + field);
            String email = fp.getString(EMAIL_USER_ACCOUNT + parentId);
            if (dn.getAssignedUserId() > 0 && "1".equals(email.trim())) {
                logger.info("++++++ found our way here");
                // generate email for user here
                StringBuffer message = new StringBuffer();
                dn = getNoteInfo(dn);
                // generate message here
                EmailEngine em = new EmailEngine(EmailEngine.getSMTPHost());
                UserAccountDAO userAccountDAO = new UserAccountDAO(sm.getDataSource());
                ItemDAO itemDAO = new ItemDAO(sm.getDataSource());
                ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
                ItemBean item = new ItemBean();
                ItemDataBean itemData = new ItemDataBean();
                StudyDAO studyDAO = new StudyDAO(sm.getDataSource());
                UserAccountBean assignedUser = (UserAccountBean) userAccountDAO.findByPK(dn.getAssignedUserId());
                String alertEmail = assignedUser.getEmail();
                message.append(MessageFormat.format(respage.getString("mailDNHeader"), assignedUser.getFirstName(), assignedUser.getLastName()));
                message.append("<A HREF='" + SQLInitServlet.getField("sysURL.base") + "ViewNotes?module=submit&listNotes_f_discrepancyNoteBean.user=" + assignedUser.getName() + "&listNotes_f_entityName=" + dn.getEntityName() + "'>" + SQLInitServlet.getField("sysURL.base") + "</A><BR/>");
                message.append(respage.getString("you_received_this_from"));
                StudyBean study = (StudyBean) studyDAO.findByPK(dn.getStudyId());
                if ("itemData".equalsIgnoreCase(entityType)) {
                    itemData = (ItemDataBean) iddao.findByPK(dn.getEntityId());
                    item = (ItemBean) itemDAO.findByPK(itemData.getItemId());
                }
                message.append(respage.getString("email_body_separator"));
                message.append(respage.getString("disc_note_info"));
                message.append(respage.getString("email_body_separator"));
                message.append(MessageFormat.format(respage.getString("mailDNParameters1"), dn.getDescription(), dn.getDetailedNotes(), ub.getName()));
                message.append(respage.getString("email_body_separator"));
                message.append(respage.getString("entity_information"));
                message.append(respage.getString("email_body_separator"));
                message.append(MessageFormat.format(respage.getString("mailDNParameters2"), study.getName(), dn.getSubjectName()));
                if (!("studySub".equalsIgnoreCase(entityType) || "subject".equalsIgnoreCase(entityType))) {
                    message.append(MessageFormat.format(respage.getString("mailDNParameters3"), dn.getEventName()));
                    if (!"studyEvent".equalsIgnoreCase(dn.getEntityType())) {
                        message.append(MessageFormat.format(respage.getString("mailDNParameters4"), dn.getCrfName()));
                        if (!"eventCrf".equalsIgnoreCase(dn.getEntityType())) {
                            message.append(MessageFormat.format(respage.getString("mailDNParameters6"), item.getName()));
                        }
                    }
                }
                message.append(respage.getString("email_body_separator"));
                message.append(MessageFormat.format(respage.getString("mailDNThanks"), study.getName()));
                message.append(respage.getString("email_body_separator"));
                message.append(respage.getString("disclaimer"));
                message.append(respage.getString("email_body_separator"));
                message.append(respage.getString("email_footer"));
                /*
                     *
                     *
                     *
                     * Please select the link below to view the information
                     * provided. You may need to login to
                     * OpenClinica_testbed with your user name and password
                     * after selecting the link. If you receive a page
                     * cannot be displayed message, please make sure to
                     * select the Change Study/Site link in the upper right
                     * table of the page, select the study referenced above,
                     * and select the link again.
                     *
                     * https://openclinica.s-3.com/OpenClinica_testbed/
                     * ViewSectionDataEntry ?ecId=117&sectionId=142&tabId=2
                     */
                String emailBodyString = message.toString();
                sendEmail(alertEmail.trim(), EmailEngine.getAdminEmail(), MessageFormat.format(respage.getString("mailDNSubject"), study.getName(), dn.getEntityName()), emailBodyString, true, null, null, true);
            }
            String close = fp.getString("close" + parentId);
            // session.setAttribute(CLOSE_WINDOW, "true".equals(close)?"true":"");
            if ("true".equals(close)) {
                addPageMessage(respage.getString("note_saved_into_db"));
                addPageMessage(respage.getString("page_close_automatically"));
                forwardPage(Page.ADD_DISCREPANCY_NOTE_SAVE_DONE);
                logger.info("Should forwardPage to ADD_DISCREPANCY_NOTE_SAVE_DONE.");
            } else {
                if (parentId == dn.getParentDnId()) {
                    mess.add(restext.getString("a_new_child_dn_added"));
                    results.put("newChildAdded" + parentId, mess);
                    setInputMessages(results);
                } else {
                    addPageMessage(restext.getString("a_new_dn_thread_added"));
                }
            }
        } else {
            session.setAttribute(BOX_TO_SHOW, parentId + "");
        }
    } else {
        setInputMessages(errors);
        boxDNMap.put(Integer.valueOf(parentId), dn);
        session.setAttribute(BOX_TO_SHOW, parentId + "");
    }
    session.setAttribute(BOX_DN_MAP, boxDNMap);
    viewNoteLink = this.appendPageFileName(viewNoteLink, "refresh", refresh + "");
    viewNoteLink = this.appendPageFileName(viewNoteLink, "y", ypos != null && ypos.length() > 0 ? ypos : "0");
    getServletContext().getRequestDispatcher(viewNoteLink).forward(request, response);
// forwardPage(Page.setNewPage(viewNoteLink, Page.VIEW_DISCREPANCY_NOTE.getTitle()));
}

Example 52 with ItemDataDAO

use of org.akaza.openclinica.dao.submit.ItemDataDAO in project OpenClinica by OpenClinica.

the class CreateOneDiscrepancyNoteServlet method updateStudySubjectStatus.

private void updateStudySubjectStatus(String entityType, int entityId) {
    if ("itemData".equalsIgnoreCase(entityType)) {
        int itemDataId = entityId;
        ItemDataDAO iddao = new ItemDataDAO(sm.getDataSource());
        ItemDataBean itemData = (ItemDataBean) iddao.findByPK(itemDataId);
        EventCRFDAO ecdao = new EventCRFDAO(sm.getDataSource());
        StudyEventDAO svdao = new StudyEventDAO(sm.getDataSource());
        StudySubjectDAO studySubjectDAO = new StudySubjectDAO(sm.getDataSource());
        EventCRFBean ec = (EventCRFBean) ecdao.findByPK(itemData.getEventCRFId());
        StudyEventBean event = (StudyEventBean) svdao.findByPK(ec.getStudyEventId());
        StudySubjectBean studySubject = (StudySubjectBean) studySubjectDAO.findByPK(event.getStudySubjectId());
        if (studySubject.getStatus() != null && studySubject.getStatus().equals(Status.SIGNED)) {
            studySubject.setStatus(Status.AVAILABLE);
            studySubject.setUpdater(ub);
            studySubject.setUpdatedDate(new Date());
            studySubjectDAO.update(studySubject);
        }
        if (ec.isSdvStatus()) {
            studySubject.setStatus(Status.AVAILABLE);
            studySubject.setUpdater(ub);
            studySubject.setUpdatedDate(new Date());
            studySubjectDAO.update(studySubject);
            ec.setSdvStatus(false);
            ecdao.update(ec);
        }
    }
}

Example 53 with ItemDataDAO

use of org.akaza.openclinica.dao.submit.ItemDataDAO in project OpenClinica by OpenClinica.

the class ViewStudySubjectServlet method getDisplayEventCRFs.

/**
 * Each of the event CRFs with its corresponding CRFBean. Then generates a
 * list of DisplayEventCRFBeans, one for each event CRF.
 *
 * @param eventCRFs
 *            The list of event CRFs for this study event.
 * @param eventDefinitionCRFs
 *            The list of event definition CRFs for this study event.
 * @return The list of DisplayEventCRFBeans for this study event.
 */
public static ArrayList getDisplayEventCRFs(DataSource ds, ArrayList eventCRFs, ArrayList eventDefinitionCRFs, UserAccountBean ub, StudyUserRoleBean currentRole, SubjectEventStatus status, StudyBean study) {
    ArrayList answer = new ArrayList();
    // HashMap definitionsById = new HashMap();
    int i;
    /*
         * for (i = 0; i < eventDefinitionCRFs.size(); i++) {
         * EventDefinitionCRFBean edc = (EventDefinitionCRFBean)
         * eventDefinitionCRFs.get(i); definitionsById.put(new
         * Integer(edc.getStudyEventDefinitionId()), edc); }
         */
    StudyEventDAO sedao = new StudyEventDAO(ds);
    CRFDAO cdao = new CRFDAO(ds);
    CRFVersionDAO cvdao = new CRFVersionDAO(ds);
    ItemDataDAO iddao = new ItemDataDAO(ds);
    EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(ds);
    for (i = 0; i < eventCRFs.size(); i++) {
        EventCRFBean ecb = (EventCRFBean) eventCRFs.get(i);
        // populate the event CRF with its crf bean
        int crfVersionId = ecb.getCRFVersionId();
        CRFBean cb = cdao.findByVersionId(crfVersionId);
        ecb.setCrf(cb);
        CRFVersionBean cvb = (CRFVersionBean) cvdao.findByPK(crfVersionId);
        ecb.setCrfVersion(cvb);
        // then get the definition so we can call
        // DisplayEventCRFBean.setFlags
        int studyEventId = ecb.getStudyEventId();
        int studyEventDefinitionId = sedao.getDefinitionIdFromStudyEventId(studyEventId);
        // EventDefinitionCRFBean edc = (EventDefinitionCRFBean)
        // definitionsById.get(new Integer(
        // studyEventDefinitionId));
        // fix problem of the above code(commented out), find the correct
        // edc, note that on definitionId can be related to multiple
        // eventdefinitioncrfBeans
        EventDefinitionCRFBean edc = edcdao.findByStudyEventDefinitionIdAndCRFId(study, studyEventDefinitionId, cb.getId());
        // rules updated 112007 tbh
        if (status.equals(SubjectEventStatus.LOCKED) || status.equals(SubjectEventStatus.SKIPPED) || status.equals(SubjectEventStatus.STOPPED)) {
            ecb.setStage(DataEntryStage.LOCKED);
        // we need to set a SED-wide flag here, because other edcs
        // in this event can be filled in and change the status, tbh
        } else if (status.equals(SubjectEventStatus.INVALID)) {
            ecb.setStage(DataEntryStage.LOCKED);
        } else if (!cb.getStatus().equals(Status.AVAILABLE)) {
            ecb.setStage(DataEntryStage.LOCKED);
        } else if (!cvb.getStatus().equals(Status.AVAILABLE)) {
            ecb.setStage(DataEntryStage.LOCKED);
        }
        // TODO need to refactor since this is similar to other code, tbh
        if (edc != null) {
            // System.out.println("edc is not null, need to set flags");
            DisplayEventCRFBean dec = new DisplayEventCRFBean();
            dec.setEventDefinitionCRF(edc);
            // System.out.println("edc.isDoubleEntry()" +
            // edc.isDoubleEntry() + ecb.getId());
            dec.setFlags(ecb, ub, currentRole, edc.isDoubleEntry());
            if (dec.isLocked()) {
            // System.out.println("*** found a locked DEC:
            // "+edc.getCrfName());
            }
            ArrayList idata = iddao.findAllByEventCRFId(ecb.getId());
            if (!idata.isEmpty()) {
                // consider an event crf started only if item data get
                // created
                answer.add(dec);
            }
        }
    }
    return answer;
}

Example 54 with ItemDataDAO

use of org.akaza.openclinica.dao.submit.ItemDataDAO in project OpenClinica by OpenClinica.

the class DataEntryServlet method isEachRequiredFieldFillout.

protected boolean isEachRequiredFieldFillout(HttpServletRequest request) {
    HttpSession session = request.getSession();
    EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
    DiscrepancyNoteDAO dndao = new DiscrepancyNoteDAO(getDataSource());
    // need to update this method to accomodate dynamics, tbh
    ItemDataDAO iddao = new ItemDataDAO(getDataSource(), locale);
    ItemDAO idao = new ItemDAO(getDataSource());
    ItemFormMetadataDAO itemFormMetadataDao = new ItemFormMetadataDAO(getDataSource());
    // Below code will iterate all shown and hidden required fields/items in a crf version and verify if the data field is filled up with value or if not , then it is a hidden field with no show rule triggered for the item.
    ArrayList<ItemFormMetadataBean> shownRequiredAllItemsInCrfVersion = itemFormMetadataDao.findAllItemsRequiredAndShownByCrfVersionId(ecb.getCRFVersionId());
    ArrayList<ItemFormMetadataBean> hiddenRequiredAllItemsInCrfVersion = itemFormMetadataDao.findAllItemsRequiredAndHiddenByCrfVersionId(ecb.getCRFVersionId());
    ItemGroupMetadataDAO<String, ArrayList> igdao = new ItemGroupMetadataDAO<String, ArrayList>(dataSource);
    ArrayList<ItemDataBean> itemdatas = null;
    for (ItemFormMetadataBean shownItemMeta : shownRequiredAllItemsInCrfVersion) {
        ItemGroupMetadataBean igBean = (ItemGroupMetadataBean) igdao.findByItemAndCrfVersion(shownItemMeta.getItemId(), ecb.getCRFVersionId());
        // verifies if the group that the item belongs to is not hidden.
        if (igBean != null && igBean.isShowGroup()) {
            itemdatas = iddao.findAllByEventCRFIdAndItemId(ecb.getId(), shownItemMeta.getItemId());
            if (itemdatas == null || itemdatas.size() == 0)
                return false;
            for (ItemDataBean itemdata : itemdatas) {
                System.out.println(itemdata.getItemId() + "  :  " + itemdata.getValue());
                if ((itemdata.getValue() == null || itemdata.getValue().equals("") || itemdata.getValue().trim().length() == 0) && dndao.findNumExistingNotesForItem(itemdata.getId()) < 1) {
                    return false;
                }
            }
        }
        ArrayList<DynamicsItemFormMetadataBean> dynamicsItemFormMetadataBeans = null;
        for (ItemFormMetadataBean hiddenItemMeta : hiddenRequiredAllItemsInCrfVersion) {
            itemdatas = iddao.findAllByEventCRFIdAndItemId(ecb.getId(), hiddenItemMeta.getItemId());
            dynamicsItemFormMetadataBeans = getItemMetadataService().getDynamicsItemFormMetadataDao().findByItemAndEventCrfShown(ecb, hiddenItemMeta.getItemId());
            if (itemdatas.size() == 0 && dynamicsItemFormMetadataBeans.size() > 0) {
                return false;
            }
            for (ItemDataBean itemdata : itemdatas) {
                if ((itemdata.getValue() == null || itemdata.getValue().equals("") || itemdata.getValue().trim().length() == 0) && dndao.findNumExistingNotesForItem(itemdata.getId()) < 1 && dynamicsItemFormMetadataBeans.size() > 0) {
                    return false;
                }
            }
        }
    }
    // had to change the query below to allow for hidden items here, tbh 04/2010
    ArrayList allFilled = iddao.findAllBlankRequiredByEventCRFId(ecb.getId(), ecb.getCRFVersionId());
    int numNotes = 0;
    if (!allFilled.isEmpty()) {
        LOGGER.trace("allFilled is not empty");
        FormDiscrepancyNotes fdn = (FormDiscrepancyNotes) session.getAttribute(AddNewSubjectServlet.FORM_DISCREPANCY_NOTES_NAME);
        HashMap idNotes = fdn.getIdNotes();
        for (int i = 0; i < allFilled.size(); i++) {
            ItemDataBean idb = (ItemDataBean) allFilled.get(i);
            int exsitingNotes = dndao.findNumExistingNotesForItem(idb.getId());
            if (exsitingNotes > 0) {
                LOGGER.trace("has existing note");
                numNotes++;
            } else if (idNotes.containsKey(idb.getId())) {
                LOGGER.trace("has note in session");
                numNotes++;
            }
        }
        LOGGER.trace("numNotes allFilled.size:" + numNotes + " " + allFilled.size());
        if (numNotes >= allFilled.size()) {
            LOGGER.trace("all required are filled out");
            return true;
        } else {
            LOGGER.debug("numNotes < allFilled.size() " + numNotes + ": " + allFilled.size());
            return false;
        }
    }
    return true;
}

Example 55 with ItemDataDAO

use of org.akaza.openclinica.dao.submit.ItemDataDAO in project OpenClinica by OpenClinica.

the class DataEntryServlet method getAllDisplayBeans.

/**
 * Retrieve the DisplaySectionBean which will be used to display the Event CRF Section on the JSP, and also is used to controll processRequest.
 * @param request TODO
 */
protected ArrayList getAllDisplayBeans(HttpServletRequest request) throws Exception {
    EventCRFBean ecb = (EventCRFBean) request.getAttribute(INPUT_EVENT_CRF);
    ArrayList sections = new ArrayList();
    HttpSession session = request.getSession();
    StudyBean study = (StudyBean) session.getAttribute("study");
    SectionDAO sdao = new SectionDAO(getDataSource());
    ItemDataDAO iddao = new ItemDataDAO(getDataSource(), locale);
    // ALL_SECTION_BEANS
    ArrayList<SectionBean> allSectionBeans = (ArrayList<SectionBean>) request.getAttribute(ALL_SECTION_BEANS);
    for (int j = 0; j < allSectionBeans.size(); j++) {
        SectionBean sb = allSectionBeans.get(j);
        DisplaySectionBean section = new DisplaySectionBean();
        section.setEventCRF(ecb);
        if (sb.getParentId() > 0) {
            SectionBean parent = (SectionBean) sdao.findByPK(sb.getParentId());
            sb.setParent(parent);
        }
        section.setSection(sb);
        CRFVersionDAO cvdao = new CRFVersionDAO(getDataSource());
        CRFVersionBean cvb = (CRFVersionBean) cvdao.findByPK(ecb.getCRFVersionId());
        section.setCrfVersion(cvb);
        CRFDAO cdao = new CRFDAO(getDataSource());
        CRFBean cb = (CRFBean) cdao.findByPK(cvb.getCrfId());
        section.setCrf(cb);
        EventDefinitionCRFDAO edcdao = new EventDefinitionCRFDAO(getDataSource());
        EventDefinitionCRFBean edcb = edcdao.findByStudyEventIdAndCRFVersionId(study, ecb.getStudyEventId(), cvb.getId());
        section.setEventDefinitionCRF(edcb);
        // setup DAO's here to avoid creating too many objects
        ItemDAO idao = new ItemDAO(getDataSource());
        ItemFormMetadataDAO ifmdao = new ItemFormMetadataDAO(getDataSource());
        iddao = new ItemDataDAO(getDataSource(), locale);
        // get all the display item beans
        ArrayList displayItems = getParentDisplayItems(false, sb, edcb, idao, ifmdao, iddao, false, request);
        LOGGER.debug("222 just ran get parent display, has group " + " FALSE has ungrouped FALSE");
        // now sort them by ordinal
        Collections.sort(displayItems);
        // now get the child DisplayItemBeans
        for (int i = 0; i < displayItems.size(); i++) {
            DisplayItemBean dib = (DisplayItemBean) displayItems.get(i);
            dib.setChildren(getChildrenDisplayItems(dib, edcb, request));
            if (shouldLoadDBValues(dib)) {
                LOGGER.trace("should load db values is true, set value");
                dib.loadDBValue();
            }
            displayItems.set(i, dib);
        }
        section.setItems(displayItems);
        sections.add(section);
    }
    return sections;
}