Examples with CrfVersion org.akaza.openclinica.domain.datamap.CrfVersion used on opensource projects

Example 1 with CrfVersion

use of org.akaza.openclinica.domain.datamap.CrfVersion in project OpenClinica by OpenClinica.

the class CrfVersionDao method findByCrfVersionId.

public CrfVersion findByCrfVersionId(int crf_version_id) {
    String query = "from " + getDomainClassName() + " crf_version  where crf_version.crfVersionId = :crfversionid ";
    Query q = getCurrentSession().createQuery(query);
    q.setParameter("crfversionid", crf_version_id);
    return (CrfVersion) q.uniqueResult();
}

Example 2 with CrfVersion

use of org.akaza.openclinica.domain.datamap.CrfVersion in project OpenClinica by OpenClinica.

the class XformMetaDataService method createCRFMetaData.

@Transactional
public FormLayout createCRFMetaData(CrfMetaDataObject cmdObject) throws Exception {
    CrfVersion crfVersion = null;
    FormLayout formLayout = null;
    CrfBean crfBean = null;
    Section section = null;
    crfBean = (CrfBean) crfDao.findByOcOID(cmdObject.crf.getOcoid());
    if (crfBean != null) {
        crfBean.setUpdateId(cmdObject.ub.getId());
        crfBean.setDateUpdated(new Date());
        crfBean = crfDao.saveOrUpdate(crfBean);
        formLayout = formLayoutDao.findByOcOID(cmdObject.version.getOcoid());
        if (formLayout == null) {
            formLayout = new FormLayout();
            formLayout = populateFormLayout(formLayout, crfBean, cmdObject);
            formLayout = formLayoutDao.saveOrUpdate(formLayout);
        }
        crfVersion = crfVersionDao.findAllByCrfId(crfBean.getCrfId()).get(0);
        section = sectionDao.findByCrfVersionOrdinal(crfVersion.getCrfVersionId(), 1);
    } else {
        crfBean = new CrfBean();
        crfBean = populateCrf(crfBean, cmdObject);
        Integer crfId = (Integer) crfDao.save(crfBean);
        crfBean.setCrfId(crfId);
        // Create new Form Layout
        formLayout = new FormLayout();
        formLayout = populateFormLayout(formLayout, crfBean, cmdObject);
        formLayout = formLayoutDao.saveOrUpdate(formLayout);
        // Create new CRF Version
        crfVersion = new CrfVersion();
        crfVersion = populateCrfVersion(crfBean, crfVersion, cmdObject);
        crfVersion = crfVersionDao.saveOrUpdate(crfVersion);
        // Create Section
        section = sectionDao.findByCrfVersionOrdinal(crfVersion.getCrfVersionId(), 1);
        if (section == null) {
            section = new Section();
            section = populateCrfVersion(section, crfVersion, cmdObject);
            sectionDao.saveOrUpdate(section);
            section = sectionDao.findByCrfVersionOrdinal(crfVersion.getCrfVersionId(), 1);
        }
    }
    createGroups(cmdObject.container, crfBean, crfVersion, formLayout, section, cmdObject.ub, cmdObject.errors);
    if (cmdObject.errors.hasErrors()) {
        logger.error("Encounter validation errors while saving CRF.  Rolling back transaction.");
        throw new RuntimeException("Encountered validation errors while saving CRF.");
    }
    return formLayout;
}

Example 3 with CrfVersion

use of org.akaza.openclinica.domain.datamap.CrfVersion in project OpenClinica by OpenClinica.

the class OpenRosaSubmissionService method processRequest.

@Transactional
public void processRequest(Study study, HashMap<String, String> subjectContext, String requestBody, Errors errors, Locale locale, ArrayList<HashMap> listOfUploadFilePaths, SubmissionContainer.FieldRequestTypeEnum requestType) throws Exception {
    // Execute save as Hibernate transaction to avoid partial imports
    CrfVersion crfVersion = crfVersionDao.findByOcOID(subjectContext.get("crfVersionOID"));
    String requestPayload = parseSubmission(requestBody, crfVersion);
    runAsTransaction(study, requestPayload, subjectContext, errors, locale, listOfUploadFilePaths, requestType);
}

Example 4 with CrfVersion

use of org.akaza.openclinica.domain.datamap.CrfVersion in project OpenClinica by OpenClinica.

the class OpenRosaSubmissionController method createEventCrf.

private EventCrf createEventCrf(FormLayout formLayout, StudyEvent studyEvent, StudySubject studySubject, UserAccount user) {
    EventCrf eventCrf = new EventCrf();
    CrfVersion crfVersion = crfVersionDao.findAllByCrfId(formLayout.getCrf().getCrfId()).get(0);
    Date currentDate = new Date();
    eventCrf.setAnnotations("");
    eventCrf.setDateCreated(currentDate);
    eventCrf.setCrfVersion(crfVersion);
    eventCrf.setFormLayout(formLayout);
    eventCrf.setInterviewerName("");
    eventCrf.setDateInterviewed(null);
    eventCrf.setUserAccount(user);
    eventCrf.setStatusId(org.akaza.openclinica.domain.Status.AVAILABLE.getCode());
    // setCompletionStatusId(1);
    eventCrf.setCompletionStatus(completionStatusDao.findByCompletionStatusId(1));
    eventCrf.setStudySubject(studySubject);
    eventCrf.setStudyEvent(studyEvent);
    eventCrf.setValidateString("");
    eventCrf.setValidatorAnnotations("");
    eventCrf.setUpdateId(user.getUserId());
    eventCrf.setDateUpdated(new Date());
    eventCrf.setValidatorId(0);
    eventCrf.setOldStatusId(0);
    eventCrf.setSdvUpdateId(0);
    eventCrf = eventCrfDao.saveOrUpdate(eventCrf);
    logger.debug("*********CREATED EVENT CRF");
    return eventCrf;
}

Example 5 with CrfVersion

use of org.akaza.openclinica.domain.datamap.CrfVersion in project OpenClinica by OpenClinica.

the class FSItemProcessor method processFieldSubmissionGroupItems.

private void processFieldSubmissionGroupItems(ArrayList<HashMap> listOfUploadFilePaths, Node repeatNode, Node itemNode, SubmissionContainer container, ItemGroup itemGroup) throws Exception {
    String itemName;
    Integer itemOrdinal = 1;
    String itemValue;
    // Node repeatGroupNode = itemNode.getParentNode();
    if (repeatNode != null) {
        final NamedNodeMap attributes = repeatNode.getAttributes();
        // check to see if groupNode has any enketo attributes
        for (int attrIndex = 0; attrIndex < attributes.getLength(); attrIndex++) {
            if (attributes.item(attrIndex).getNodeName().equals(ENKETO_ORDINAL)) {
                logger.debug("found enketo attribute");
                logger.debug(attributes.item(attrIndex).getNodeName());
                logger.debug(attributes.item(attrIndex).getNodeValue());
                itemOrdinal = new Integer(attributes.item(attrIndex).getNodeValue());
            }
        }
    } else {
        itemOrdinal = 1;
    }
    FormLayout formLayout = container.getFormLayout();
    CrfVersion crfVersion = crfVersionDao.findAllByCrfId(formLayout.getCrf().getCrfId()).get(0);
    container.setCrfVersion(crfVersion);
    Item item = null;
    ItemGroupMetadata igm = null;
    if (container.getRequestType() == FieldRequestTypeEnum.DELETE_FIELD) {
        List<ItemGroupMetadata> igms = itemGroupMetadataDao.findByItemGroupCrfVersion(itemGroup.getItemGroupId(), crfVersion.getCrfVersionId());
        for (ItemGroupMetadata ig : igms) {
            ItemData existingItemData = itemDataDao.findByItemEventCrfOrdinal(ig.getItem().getItemId(), container.getEventCrf().getEventCrfId(), itemOrdinal);
            // ItemData existingItemData = lookupFieldItemData(itemGroup, itemOrdinal, container);
            if (existingItemData != null) {
                existingItemData.setDeleted(true);
                existingItemData.setValue("");
                existingItemData.setOldStatus(existingItemData.getStatus());
                existingItemData.setUserAccount(container.getUser());
                existingItemData.setStatus(Status.AVAILABLE);
                existingItemData.setUpdateId(container.getUser().getUserId());
                existingItemData.setInstanceId(container.getInstanceId());
                existingItemData = itemDataDao.saveOrUpdate(existingItemData);
                resetSdvStatus(container);
                // Close discrepancy notes
                closeItemDiscrepancyNotes(container, existingItemData);
            }
        }
        return;
    }
    // igm = itemGroupMetadataDao.findByItemCrfVersion(item.getItemId(), crfVersion.getCrfVersionId());
    // Item loop
    QueryServiceHelperBean helperBean = new QueryServiceHelperBean();
    if (queryService.getQueryAttribute(helperBean, itemNode) != null) {
        queryService.process(helperBean, container, itemNode, itemOrdinal);
    } else if (shouldProcessItemNode(itemNode)) {
        itemName = itemNode.getNodeName().trim();
        itemValue = itemNode.getTextContent();
        item = itemDao.findByNameCrfId(itemNode.getNodeName(), crfVersion.getCrf().getCrfId());
        if (item == null) {
            logger.error("Failed to lookup item: '" + itemName + "'.  Continuing with submission.");
        }
        ItemFormMetadata itemFormMetadata = itemFormMetadataDao.findByItemCrfVersion(item.getItemId(), crfVersion.getCrfVersionId());
        // Convert space separated Enketo multiselect values to comma separated OC multiselect values
        Integer responseTypeId = itemFormMetadata.getResponseSet().getResponseType().getResponseTypeId();
        if (responseTypeId == 3 || responseTypeId == 7) {
            itemValue = itemValue.replaceAll(" ", ",");
        }
        if (responseTypeId == 4) {
            /*
                 * for (HashMap uploadFilePath : listOfUploadFilePaths) {
                 * if ((boolean) uploadFilePath.containsKey(itemValue) && itemValue != "") {
                 * itemValue = (String) uploadFilePath.get(itemValue);
                 * break;
                 * }
                 * }
                 */
            FormLayoutMedia media = formLayoutMediaDao.findByEventCrfIdAndFileName(container.getEventCrf().getEventCrfId(), itemValue);
            if (media == null) {
                media = new FormLayoutMedia();
            }
            media.setName(itemValue);
            media.setFormLayout(formLayout);
            media.setEventCrfId(container.getEventCrf().getEventCrfId());
            media.setPath("/" + container.getStudy().getOc_oid() + "/");
            formLayoutMediaDao.saveOrUpdate(media);
        }
        ItemData newItemData = createItemData(item, itemValue, itemOrdinal, container);
        Errors itemErrors = validateItemData(newItemData, item, responseTypeId);
        if (itemErrors.hasErrors()) {
            container.getErrors().addAllErrors(itemErrors);
            throw new Exception("Item validation error.  Rolling back submission changes.");
        }
        ItemData existingItemData = itemDataDao.findByItemEventCrfOrdinal(item.getItemId(), container.getEventCrf().getEventCrfId(), itemOrdinal);
        if (existingItemData == null) {
            newItemData.setStatus(Status.UNAVAILABLE);
            itemDataDao.saveOrUpdate(newItemData);
            resetSdvStatus(container);
        } else if (existingItemData.getValue().equals(newItemData.getValue())) {
        } else {
            // Existing item. Value changed. Update existing value.
            existingItemData.setInstanceId(container.getInstanceId());
            existingItemData.setValue(newItemData.getValue());
            existingItemData.setUpdateId(container.getUser().getUserId());
            existingItemData.setDateUpdated(new Date());
            itemDataDao.saveOrUpdate(existingItemData);
            resetSdvStatus(container);
        }
    }
}