Examples with StudyEvent org.akaza.openclinica.domain.datamap.StudyEvent used on opensource projects

Example 21 with StudyEvent

use of org.akaza.openclinica.domain.datamap.StudyEvent in project OpenClinica by OpenClinica.

the class ExpressionService method evaluateExpression.

public String evaluateExpression(String expression) throws OpenClinicaSystemException {
    String value = null;
    Map<Integer, ItemBean> itemBeansI = new HashMap<Integer, ItemBean>();
    if (items != null) {
        Iterator<ItemBean> iter = items.values().iterator();
        while (iter.hasNext()) {
            ItemBean item = iter.next();
            itemBeansI.put(item.getId(), item);
        }
    }
    if (expressionWrapper.getRuleSet() != null) {
        if (checkIfExpressionIsForScheduling(expression)) {
            StudyEvent studyEvent;
            if (expression.endsWith(this.STARTDATE)) {
                String oid = expression.substring(0, expression.indexOf(this.STARTDATE));
                studyEvent = getStudyEventFromOID(oid);
                if (studyEvent != null) {
                    logger.debug("Study Event Start Date: " + studyEvent.getDateStart().toString().substring(0, 10).trim());
                    return studyEvent.getDateStart().toString().substring(0, 10).trim();
                } else
                    return "";
            } else {
                String oid = expression.substring(0, expression.indexOf(this.STATUS));
                studyEvent = getStudyEventFromOID(oid);
                if (studyEvent != null) {
                    logger.debug("Status: " + SubjectEventStatus.getSubjectEventStatusName(studyEvent.getSubjectEventStatusId()));
                    return SubjectEventStatus.getSubjectEventStatusName(studyEvent.getSubjectEventStatusId());
                } else
                    return "";
            }
        }
        if (isExpressionPartial(expression)) {
            String fullExpression = constructFullExpressionIfPartialProvided(expression, expressionWrapper.getRuleSet().getTarget().getValue());
            List<ItemDataBean> itemDatas = getItemDatas(fullExpression);
            fullExpression = fixGroupOrdinal(fullExpression, expressionWrapper.getRuleSet().getTarget().getValue(), itemDatas, expressionWrapper.getEventCrf());
            if (checkSyntax(fullExpression)) {
                String valueFromForm = null;
                if (items == null) {
                    valueFromForm = getValueFromForm(fullExpression);
                } else {
                    valueFromForm = getValueFromForm(fullExpression, items);
                }
                String valueFromDb = null;
                if (itemBeansI == null) {
                    valueFromDb = getValueFromDb(fullExpression, itemDatas);
                } else {
                    valueFromDb = getValueFromDb(fullExpression, itemDatas, itemBeansI);
                }
                logger.debug("valueFromForm : {} , valueFromDb : {}", valueFromForm, valueFromDb);
                if (valueFromForm == null && valueFromDb == null) {
                    throw new OpenClinicaSystemException("OCRERR_0017", new Object[] { fullExpression, expressionWrapper.getRuleSet().getTarget().getValue() });
                }
                /*
                     * if (valueFromForm != null) { // TODO: Do this if type a
                     * date String dateFormat =
                     * ResourceBundleProvider.getFormatBundle
                     * ().getString("date_format_string"); String dateRegexp =
                     * ResourceBundleProvider
                     * .getFormatBundle().getString("date_regexp");
                     * valueFromForm =
                     * ExpressionTreeHelper.isValidDate(valueFromForm,
                     * dateFormat, dateRegexp); }
                     */
                value = valueFromForm == null ? valueFromDb : valueFromForm;
            }
        } else {
            // So Expression is not Partial
            HashMap<String, String> map = getValueFromDbb(expression);
            String valueFromDb = null;
            String matchEvents = null;
            String valueFromForm = null;
            if (checkSyntax(expression)) {
                valueFromDb = map.get("value");
                matchEvents = map.get("match");
                // if se_id are a match go in , otherwise nothing
                if (matchEvents != null && matchEvents.equals("true")) {
                    if (items == null) {
                        valueFromForm = getValueFromForm(expression);
                    } else {
                        valueFromForm = getValueFromForm(expression, items);
                    }
                }
                logger.debug("valueFromDb : {}", valueFromDb);
                value = valueFromForm == null ? valueFromDb : valueFromForm;
                if (value == null) {
                    logger.info("The value is " + value + "  for expression" + expression);
                    throw new OpenClinicaSystemException("OCRERR_0018", new Object[] { expression });
                }
            }
        }
    }
    return value;
}

Example 22 with StudyEvent

use of org.akaza.openclinica.domain.datamap.StudyEvent in project OpenClinica by OpenClinica.

the class BeanPropertyRuleRunner method runRules.

public void runRules(List<RuleSetBean> ruleSets, DataSource ds, BeanPropertyService beanPropertyService, StudyEventDao studyEventDaoHib, StudyEventDefinitionDao studyEventDefDaoHib, StudyEventChangeDetails changeDetails, Integer userId, JavaMailSenderImpl mailSender) {
    for (RuleSetBean ruleSet : ruleSets) {
        List<ExpressionBean> expressions = ruleSet.getExpressions();
        for (ExpressionBean expressionBean : expressions) {
            ruleSet.setTarget(expressionBean);
            StudyEvent studyEvent = studyEventDaoHib.findByStudyEventId(Integer.valueOf(getExpressionService().getStudyEventDefenitionOrdninalCurated(ruleSet.getTarget().getValue())));
            int eventOrdinal = studyEvent.getSampleOrdinal();
            int studySubjectBeanId = studyEvent.getStudySubject().getStudySubjectId();
            List<RuleSetRuleBean> ruleSetRules = ruleSet.getRuleSetRules();
            for (RuleSetRuleBean ruleSetRule : ruleSetRules) {
                Object result = null;
                if (ruleSetRule.getStatus() == Status.AVAILABLE) {
                    RuleBean rule = ruleSetRule.getRuleBean();
                    //       StudyBean currentStudy = rule.getStudy();//TODO:Fix me!
                    StudyDAO sdao = new StudyDAO(ds);
                    StudyBean currentStudy = (StudyBean) sdao.findByPK(rule.getStudyId());
                    ExpressionBeanObjectWrapper eow = new ExpressionBeanObjectWrapper(ds, currentStudy, rule.getExpression(), ruleSet, studySubjectBeanId, studyEventDaoHib, studyEventDefDaoHib);
                    try {
                        // StopWatch sw = new StopWatch();
                        ExpressionObjectWrapper ew = new ExpressionObjectWrapper(ds, currentStudy, rule.getExpression(), ruleSet);
                        ew.setStudyEventDaoHib(studyEventDaoHib);
                        ew.setStudySubjectId(studySubjectBeanId);
                        ew.setExpressionContext(ExpressionObjectWrapper.CONTEXT_EXPRESSION);
                        OpenClinicaExpressionParser oep = new OpenClinicaExpressionParser(ew);
                        // eow.setUserAccountBean(ub);
                        eow.setStudyBean(currentStudy);
                        result = oep.parseAndEvaluateExpression(rule.getExpression().getValue());
                        // sw.stop();
                        logger.debug("Rule Expression Evaluation Result: " + result);
                        // Actions
                        List<RuleActionBean> actionListBasedOnRuleExecutionResult = ruleSetRule.getActions(result.toString());
                        for (RuleActionBean ruleActionBean : actionListBasedOnRuleExecutionResult) {
                            // ActionProcessor ap =ActionProcessorFacade.getActionProcessor(ruleActionBean.getActionType(), ds, null, null,ruleSet, null, ruleActionBean.getRuleSetRule());
                            if (ruleActionBean instanceof EventActionBean) {
                                beanPropertyService.runAction(ruleActionBean, eow, userId, changeDetails.getRunningInTransaction());
                            } else if (ruleActionBean instanceof NotificationActionBean) {
                                notificationActionProcessor = new NotificationActionProcessor(ds, mailSender, ruleSetRule);
                                notificationActionProcessor.runNotificationAction(ruleActionBean, ruleSet, studySubjectBeanId, eventOrdinal);
                            }
                        }
                    } catch (OpenClinicaSystemException osa) {
                        // 	osa.printStackTrace();
                        logger.error("Rule Runner received exception: " + osa.getMessage());
                        logger.error(ExceptionUtils.getStackTrace(osa));
                    // TODO: report something useful
                    }
                }
            }
        //     	}
        }
    }
}

Example 23 with StudyEvent

use of org.akaza.openclinica.domain.datamap.StudyEvent in project OpenClinica by OpenClinica.

the class OpenRosaSubmissionController method markComplete.

// @RequestMapping(value = "/{studyOID}/fieldsubmission/complete", method = RequestMethod.POST)
public ResponseEntity<String> markComplete(HttpServletRequest request, HttpServletResponse response, @PathVariable("studyOID") String studyOID, @RequestParam(FORM_CONTEXT) String ecid) throws Exception {
    HashMap<String, String> subjectContext = null;
    PFormCache cache = PFormCache.getInstance(context);
    subjectContext = cache.getSubjectContext(ecid);
    int studyEventDefinitionID = Integer.valueOf(subjectContext.get("studyEventDefinitionID"));
    int userAccountID = Integer.valueOf(subjectContext.get("userAccountID"));
    String studySubjectOID = subjectContext.get("studySubjectOID");
    String formLayoutOID = subjectContext.get("formLayoutOID");
    int studyEventOrdinal = Integer.valueOf(subjectContext.get("studyEventOrdinal"));
    UserAccount userAccount = userAccountDao.findById(userAccountID);
    StudySubject studySubject = studySubjectDao.findByOcOID(studySubjectOID);
    Study study = studyDao.findByOcOID(studyOID);
    StudyEventDefinition sed = studyEventDefinitionDao.findById(studyEventDefinitionID);
    FormLayout formLayout = formLayoutDao.findByOcOID(formLayoutOID);
    CrfVersion crfVersion = crfVersionDao.findAllByCrfId(formLayout.getCrf().getCrfId()).get(0);
    StudyEvent studyEvent = studyEventDao.fetchByStudyEventDefOIDAndOrdinalTransactional(sed.getOc_oid(), studyEventOrdinal, studySubject.getStudySubjectId());
    EventCrf eventCrf = eventCrfDao.findByStudyEventIdStudySubjectIdFormLayoutId(studyEvent.getStudyEventId(), studySubject.getStudySubjectId(), formLayout.getFormLayoutId());
    if (eventCrf == null) {
        eventCrf = createEventCrf(formLayout, studyEvent, studySubject, userAccount);
        List<Item> items = itemDao.findAllByCrfVersion(crfVersion.getCrfVersionId());
        createItemData(items.get(0), "", eventCrf, userAccount);
    }
    eventCrf.setStatusId(org.akaza.openclinica.domain.Status.UNAVAILABLE.getCode());
    eventCrf.setUserAccount(userAccount);
    eventCrf.setUpdateId(userAccount.getUserId());
    eventCrf.setDateUpdated(new Date());
    eventCrfDao.saveOrUpdate(eventCrf);
    List<EventCrf> eventCrfs = eventCrfDao.findByStudyEventIdStudySubjectId(studyEvent.getStudyEventId(), studySubject.getOcOid());
    List<EventDefinitionCrf> eventDefinitionCrfs = eventDefinitionCrfDao.findAvailableByStudyEventDefStudy(sed.getStudyEventDefinitionId(), study.getStudyId());
    int count = 0;
    for (EventCrf evCrf : eventCrfs) {
        if (evCrf.getStatusId() == org.akaza.openclinica.domain.Status.UNAVAILABLE.getCode() || evCrf.getStatusId() == org.akaza.openclinica.domain.Status.DELETED.getCode() || evCrf.getStatusId() == org.akaza.openclinica.domain.Status.AUTO_DELETED.getCode()) {
            for (EventDefinitionCrf eventDefinitionCrf : eventDefinitionCrfs) {
                if (eventDefinitionCrf.getCrf().getCrfId() == evCrf.getFormLayout().getCrf().getCrfId()) {
                    count++;
                    break;
                }
            }
        }
    }
    if (count == eventDefinitionCrfs.size()) {
        studyEvent.setSubjectEventStatusId(SubjectEventStatus.COMPLETED.getCode());
        studyEvent.setUserAccount(userAccount);
        studyEventDao.saveOrUpdate(studyEvent);
    } else if (studyEvent.getSubjectEventStatusId() == SubjectEventStatus.SCHEDULED.getCode()) {
        studyEvent.setSubjectEventStatusId(SubjectEventStatus.DATA_ENTRY_STARTED.getCode());
        studyEvent.setUserAccount(userAccount);
        studyEventDao.saveOrUpdate(studyEvent);
    }
    String responseMessage = "<OpenRosaResponse xmlns=\"http://openrosa.org/http/response\">" + "<message>success</message>" + "</OpenRosaResponse>";
    return new ResponseEntity<String>(responseMessage, HttpStatus.CREATED);
}

Example 24 with StudyEvent

use of org.akaza.openclinica.domain.datamap.StudyEvent in project OpenClinica by OpenClinica.

the class EventProcessor method processParticipant.

private void processParticipant(SubmissionContainer container, Errors errors, StudySubject studySubject, StudyEventDefinition studyEventDefinition) throws Exception {
    Integer ordinal = Integer.valueOf(container.getSubjectContext().get("studyEventOrdinal"));
    StudyEvent existingEvent = studyEventDao.fetchByStudyEventDefOIDAndOrdinal(studyEventDefinition.getOc_oid(), ordinal, studySubject.getStudySubjectId());
    if (existingEvent == null) {
        container.setStudyEvent(createStudyEvent(studySubject, studyEventDefinition, ordinal, container.getUser()));
    } else
        container.setStudyEvent(existingEvent);
    // Create event crf if it doesn't exist
    if (studyEventDefinition.getStatus() != Status.AVAILABLE) {
        logger.info("This Crf Version has a Status Not available in this Study Event Defn");
        errors.reject("This Crf Version has a Status Not available in this Study Event Defn");
        throw new Exception("This Crf Version has a Status Not available in this Study Event Defn");
    }
    EventCrf existingEventCrf = eventCrfDao.findByStudyEventIdStudySubjectIdCrfId(container.getStudyEvent().getStudyEventId(), container.getSubject().getStudySubjectId(), container.getFormLayout().getCrf().getCrfId());
    if (existingEventCrf == null) {
        logger.info("***New EventCrf is created***");
        // create event crf
        container.setEventCrf(createEventCrf(container.getFormLayout(), container.getStudyEvent(), container.getSubject(), container.getUser()));
    } else if (existingEventCrf.getCrfVersion().getOcOid().equals(container.getCrfVersion().getOcOid())) {
        logger.info("***  Existing EventCrf with same CRF Version  ***");
        // use existing event crf
        container.setEventCrf(existingEventCrf);
    } else {
        // different version already exists. log error and abort submission
        errors.reject("Existing EventCrf with other CRF version");
        logger.info("***  Existing EventCrf with other CRF version  ***");
        throw new Exception("***  Existing EventCrf with other CRF version  ***");
    }
}

Example 25 with StudyEvent

use of org.akaza.openclinica.domain.datamap.StudyEvent in project OpenClinica by OpenClinica.

the class StudyEventController method completeParticipantEvent.

/**
	 * @api {put} /pages/auth/api/v1/studyevent/studysubject/{studySubjectOid}/studyevent/{studyEventDefOid}/ordinal/{ordinal}/complete Complete a Participant Event
	 * @apiName completeParticipantEvent
	 * @apiPermission Authenticate using api-key. admin
	 * @apiVersion 1.0.0
	 * @apiParam {String} studySubjectOid Study Subject OID.
	 * @apiParam {String} studyEventDefOid Study Event Definition OID.
	 * @apiParam {Integer} ordinal Ordinal of Study Event Repetition.
	 * @apiGroup Form
	 * @apiHeader {String} api_key Users unique access-key.
	 * @apiDescription Completes a participant study event.
	 * @apiErrorExample {json} Error-Response:
	 *                  HTTP/1.1 403 Forbidden
	 *                  {
	 *                  "code": "403",
	 *                  "message": "Request Denied.  Operation not allowed."
	 *                  }
	 * @apiSuccessExample {json} Success-Response:
	 *                    HTTP/1.1 200 OK
	 *                    {
	 *                    "code": "200",
	 *                    "message": "Success."
	 *                    }
	 */
@RequestMapping(value = "/studysubject/{studySubjectOid}/studyevent/{studyEventDefOid}/ordinal/{ordinal}/complete", method = RequestMethod.PUT)
@ResponseBody
public Map<String, String> completeParticipantEvent(HttpServletRequest request, @PathVariable("studySubjectOid") String studySubjectOid, @PathVariable("studyEventDefOid") String studyEventDefOid, @PathVariable("ordinal") Integer ordinal) throws Exception {
    StudySubject subject = studySubjectDao.findByOcOID(studySubjectOid);
    StudyEvent studyEvent = studyEventDao.fetchByStudyEventDefOIDAndOrdinal(studyEventDefOid, ordinal, subject.getStudySubjectId());
    StudyEventDefinition studyEventDefinition = studyEventDefinitionDao.findByStudyEventDefinitionId(studyEvent.getStudyEventDefinition().getStudyEventDefinitionId());
    Study study = studyEventDefinition.getStudy();
    Map<String, String> response = new HashMap<String, String>();
    // Verify this request is allowed.
    if (!mayProceed(study)) {
        response.put("code", String.valueOf(HttpStatus.FORBIDDEN.value()));
        response.put("message", "Request Denied.  Operation not allowed.");
        return response;
    }
    // Get list of eventCRFs
    // By this point we can assume all Participant forms have been submitted at least once and have an event_crf entry.
    // Non-Participant forms may not have an entry.
    List<EventDefinitionCrf> eventDefCrfs = eventDefinitionCrfDao.findByStudyEventDefinitionId(studyEventDefinition.getStudyEventDefinitionId());
    List<EventCrf> eventCrfs = eventCrfDao.findByStudyEventIdStudySubjectId(studyEvent.getStudyEventId(), studySubjectOid);
    try {
        completeData(studyEvent, eventDefCrfs, eventCrfs);
    } catch (Exception e) {
        // Transaction has been rolled back due to an exception.
        logger.error("Error encountered while completing Study Event: " + e.getMessage());
        logger.error(ExceptionUtils.getStackTrace(e));
        response.put("code", String.valueOf(HttpStatus.INTERNAL_SERVER_ERROR.value()));
        response.put("message", "Error encountered while completing participant event.");
        return response;
    }
    response.put("code", String.valueOf(HttpStatus.OK.value()));
    response.put("message", "Success.");
    return response;
//return new ResponseEntity<String>("<message>Success</message>", org.springframework.http.HttpStatus.OK);
}