Examples with StudyUserRoleId org.akaza.openclinica.domain.datamap.StudyUserRoleId used on opensource projects

Example 1 with StudyUserRoleId

use of org.akaza.openclinica.domain.datamap.StudyUserRoleId in project OpenClinica by OpenClinica.

the class UserProcessor method process.

@Override
public ProcessorEnum process(SubmissionContainer container) throws Exception {
    logger.info("Executing User Processor.");
    Errors errors = container.getErrors();
    String contextStudySubjectOid = container.getSubjectContext().get("studySubjectOID");
    String studySubjectOid = container.getSubject().getOcOid();
    String parentStudyOid = getParentStudy(container.getStudy().getOc_oid()).getOc_oid();
    String userAccountId = container.getSubjectContext().get("userAccountID");
    // Check if UserAccount is specified in subject context
    if (!StringUtils.isEmpty(userAccountId)) {
        UserAccount existingAccount = userAccountDao.findByUserId(Integer.valueOf(userAccountId));
        if (existingAccount == null) {
            logger.info("Could not find existing user account from provided context.  Aborting submission.");
            errors.reject("Could not find existing user account from provided context.  Aborting submission.");
            throw new Exception("Could not find existing user account from provided context.  Aborting submission.");
        }
        container.setUser(existingAccount);
    // if study subject oid is not null, just look up user account
    } else if (contextStudySubjectOid != null) {
        String userName = parentStudyOid + "." + contextStudySubjectOid;
        UserAccount existingAccount = userAccountDao.findByUserName(userName);
        if (existingAccount == null) {
            logger.info("Could not find existing user account.  Aborting submission.");
            errors.reject("Could not find existing user account.  Aborting submission.");
            throw new Exception("Could not find existing user account.  Aborting submission.");
        }
        container.setUser(existingAccount);
    } else {
        String userName = parentStudyOid + "." + studySubjectOid;
        UserAccount existingAccount = userAccountDao.findByUserName(userName);
        if (existingAccount != null) {
            container.setUser(existingAccount);
        } else {
            //Create user account
            UserAccount rootUser = userAccountDao.findByUserId(1);
            UserAccount createdUser = new UserAccount();
            createdUser.setUserName(parentStudyOid + "." + container.getSubject().getOcOid());
            createdUser.setFirstName(INPUT_FIRST_NAME);
            createdUser.setLastName(INPUT_LAST_NAME);
            createdUser.setEmail(INPUT_EMAIL);
            createdUser.setInstitutionalAffiliation(INPUT_INSTITUTION);
            createdUser.setActiveStudy(container.getStudy());
            String passwordHash = UserAccountBean.LDAP_PASSWORD;
            createdUser.setPasswd(passwordHash);
            createdUser.setPasswdTimestamp(null);
            createdUser.setDateLastvisit(null);
            createdUser.setStatus(Status.DELETED);
            createdUser.setPasswdChallengeQuestion("");
            createdUser.setPasswdChallengeAnswer("");
            createdUser.setPhone("");
            createdUser.setUserAccount(rootUser);
            createdUser.setRunWebservices(false);
            createdUser.setActiveStudy(container.getStudy());
            UserType type = userTypeDao.findByUserTypeId(2);
            createdUser.setUserType(type);
            createdUser.setEnabled(true);
            createdUser.setAccountNonLocked(true);
            createdUser.setAccessCode("");
            createdUser.setApiKey("");
            createdUser = userAccountDao.saveOrUpdate(createdUser);
            container.setUser(createdUser);
            //Create study user role
            Date date = new Date();
            StudyUserRoleId studyUserRoleId = new StudyUserRoleId(Role.RESEARCHASSISTANT2.getName(), container.getStudy().getStudyId(), Status.AUTO_DELETED.getCode(), rootUser.getUserId(), date, createdUser.getUserName());
            StudyUserRole studyUserRole = new StudyUserRole(studyUserRoleId);
            studyUserRoleDao.saveOrUpdate(studyUserRole);
        //TODO: StudyUserRole object had to be heavily modified.  May need fixing.  Also roleName specified
        // doesn't exist in role table.  May need to fix that.
        // This table should also foreign key to user_account but doesn't.
        }
    }
    return ProcessorEnum.PROCEED;
}

Example 2 with StudyUserRoleId

use of org.akaza.openclinica.domain.datamap.StudyUserRoleId in project OpenClinica by OpenClinica.

the class OdmImportServiceImpl method importOdmToOC.

@Transactional
public void importOdmToOC(ODM odm) {
    UserAccount userAccount = getCurrentUser();
    // TODO add validation to all entities
    ODMcomplexTypeDefinitionStudy odmStudy = odm.getStudy().get(0);
    Study study = saveOrUpdateStudy(odm, userAccount, odmStudy);
    ParticipantPortalRegistrar portal = new ParticipantPortalRegistrar();
    portal.registerStudy(study.getOc_oid(), study.getOc_oid(), study.getName());
    StudyParameterValue spv = getStudyParameterValueDao().findByStudyIdParameter(study.getStudyId(), "participantPortal");
    // Update OC Study configuration
    if (spv == null) {
        spv = new StudyParameterValue();
        spv.setStudy(study);
    }
    spv.setValue("enabled");
    spv = getStudyParameterValueDao().saveOrUpdate(spv);
    StudyUserRole studyUserRole = null;
    StudyUserRoleId studyUserRoleId = null;
    Form[] fmCrfs = getAllCrfsByProtIdFromFormManager(study);
    ArrayList<StudyUserRole> surRoles = getStudyUserRoleDao().findAllUserRolesByUserAccount(userAccount, study.getStudyId(), study.getStudyId());
    if (surRoles.size() == 0) {
        studyUserRoleId = new StudyUserRoleId();
        studyUserRole = new StudyUserRole();
        studyUserRole = getStudyUserRoleDao().saveOrUpdate(populateUserRole(study, userAccount, studyUserRole, studyUserRoleId));
    }
    StudyEventDefinition studyEventDefinition = null;
    List<ODMcomplexTypeDefinitionMetaDataVersion> odmMetadataVersions = odmStudy.getMetaDataVersion();
    List<ODMcomplexTypeDefinitionStudyEventDef> odmStudyEventDefs = saveOrUpdateEvent(userAccount, study, odmMetadataVersions);
    CrfBean crf = null;
    FormLayout formLayout = null;
    saveOrUpdateCrf(userAccount, study, odmMetadataVersions, fmCrfs);
    List<ODMcomplexTypeDefinitionStudyEventRef> odmStudyEventRefs = odmMetadataVersions.get(0).getProtocol().getStudyEventRef();
    for (ODMcomplexTypeDefinitionStudyEventRef odmStudyEventRef : odmStudyEventRefs) {
        for (ODMcomplexTypeDefinitionStudyEventDef odmStudyEventDef : odmStudyEventDefs) {
            if (odmStudyEventDef.getOID().equals(odmStudyEventRef.getStudyEventOID())) {
                studyEventDefinition = getStudyEventDefDao().findByOcOID(odmStudyEventDef.getOID());
                studyEventDefinition.setOrdinal(odmStudyEventRef.getOrderNumber().intValue());
                studyEventDefinition = getStudyEventDefDao().saveOrUpdate(studyEventDefinition);
                List<EventDefinitionCrf> jsonEventDefCrfList = new ArrayList<>();
                EventDefinitionCrf eventDefinitionCrf = null;
                for (ODMcomplexTypeDefinitionFormRef odmFormRef : odmStudyEventDef.getFormRef()) {
                    crf = getCrfDao().findByOcOID(odmFormRef.getFormOID());
                    eventDefinitionCrf = getEventDefinitionCrfDao().findByStudyEventDefinitionIdAndCRFIdAndStudyId(studyEventDefinition.getStudyEventDefinitionId(), crf.getCrfId(), study.getStudyId());
                    String defaultVersionName = null;
                    OCodmComplexTypeDefinitionConfigurationParameters conf = odmFormRef.getConfigurationParameters();
                    List<OCodmComplexTypeDefinitionFormLayoutRef> formLayoutRefs = odmFormRef.getFormLayoutRef();
                    if (formLayoutRefs.size() == 1 && formLayoutRefs.get(0).getIsDefaultVersion() == null) {
                        defaultVersionName = formLayoutRefs.get(0).getOID();
                    } else {
                        for (OCodmComplexTypeDefinitionFormLayoutRef formLayoutRef : formLayoutRefs) {
                            if (formLayoutRef.getIsDefaultVersion().equalsIgnoreCase("Yes")) {
                                defaultVersionName = formLayoutRef.getOID();
                            }
                        }
                    }
                    if (defaultVersionName == null) {
                        defaultVersionName = formLayoutRefs.get(0).getOID();
                    }
                    formLayout = getFormLayoutDao().findByNameCrfId(defaultVersionName, crf.getCrfId());
                    EventDefinitionCrfDTO edcObj = new EventDefinitionCrfDTO();
                    edcObj.setUserAccount(userAccount);
                    edcObj.setConf(conf);
                    edcObj.setCrf(crf);
                    edcObj.setEventDefinitionCrf(eventDefinitionCrf);
                    edcObj.setOdmFormRef(odmFormRef);
                    edcObj.setStudy(study);
                    edcObj.setFormLayout(formLayout);
                    edcObj.setStudyEventDefinition(studyEventDefinition);
                    EDCTagDTO populateEDCTagParameter = new EDCTagDTO();
                    populateEDCTagParameter.setConf(conf);
                    populateEDCTagParameter.setConf(conf);
                    populateEDCTagParameter.setEventDefinitionCrf(eventDefinitionCrf);
                    populateEDCTagParameter.setUserAccount(userAccount);
                    eventDefinitionCrf = saveOrUpdateEventDefnCrf(new EventDefinitionCrfDTO(edcObj));
                    saveOrUpdateEDCTag(new EDCTagDTO(populateEDCTagParameter), studyEventDefinition, crf);
                    jsonEventDefCrfList.add(eventDefinitionCrf);
                }
                List<EventDefinitionCrf> ocEventDefCrfList = getEventDefinitionCrfDao().findAvailableByStudyEventDefStudy(studyEventDefinition.getStudyEventDefinitionId(), study.getStudyId());
                for (EventDefinitionCrf ocEventDefCrf : ocEventDefCrfList) {
                    if (!jsonEventDefCrfList.contains(ocEventDefCrf)) {
                        ocEventDefCrf.setStatusId(Status.DELETED.getCode());
                        getEventDefinitionCrfDao().saveOrUpdate(ocEventDefCrf);
                    }
                }
            }
        }
    }
}