Examples with Article org.ambraproject.rhino.model.Article used on opensource projects

Example 26 with Article

use of org.ambraproject.rhino.model.Article in project rhino by PLOS.

the class CommentCrudServiceImpl method serveComments.

@Override
public ServiceResponse<List<CommentOutputView>> serveComments(ArticleIdentifier articleId) throws IOException {
    Article article = articleCrudService.readArticle(articleId);
    Collection<Comment> comments = fetchAllComments(article);
    CommentOutputView.Factory factory = new CommentOutputView.Factory(new CompetingInterestPolicy(runtimeConfiguration), comments, article);
    List<CommentOutputView> views = comments.stream().filter(comment -> comment.getParent() == null).sorted(CommentOutputView.BY_DATE).map(factory::buildView).collect(Collectors.toList());
    return ServiceResponse.serveView(views);
}

Example 27 with Article

use of org.ambraproject.rhino.model.Article in project rhino by PLOS.

the class IssueOutputView method getIssueImageFigureDoi.

private static String getIssueImageFigureDoi(ArticleCrudService articleCrudService, Article imageArticle) {
    ArticleRevision latestArticleRevision = articleCrudService.getLatestRevision(imageArticle).orElseThrow(() -> new RuntimeException("Image article has no published revisions. " + imageArticle.getDoi()));
    ArticleIngestion ingestion = latestArticleRevision.getIngestion();
    Collection<ArticleItem> allArticleItems = articleCrudService.getAllArticleItems(ingestion);
    List<ArticleItem> figureImageItems = allArticleItems.stream().filter(item -> FIGURE_IMAGE_TYPES.contains(item.getItemType())).collect(Collectors.toList());
    if (figureImageItems.size() != 1) {
        throw new RuntimeException("Image article does not contain exactly one image file. " + imageArticle.getDoi());
    }
    return figureImageItems.get(0).getDoi();
}

Example 28 with Article

use of org.ambraproject.rhino.model.Article in project rhino by PLOS.

the class TaxonomyClassificationServiceImpl method populateCategories.

/**
   * {@inheritDoc}
   */
@Override
public void populateCategories(ArticleRevision revision) {
    ArticleIngestion ingestion = revision.getIngestion();
    Article article = ingestion.getArticle();
    Document xml = articleCrudService.getManuscriptXml(ingestion);
    List<WeightedTerm> terms;
    String doi = article.getDoi();
    //todo: fix or remove this when we find a home for article types
    boolean isAmendment = false;
    if (!isAmendment) {
        terms = classifyArticle(article, xml);
        if (terms != null && terms.size() > 0) {
            List<WeightedTerm> leafNodes = getDistinctLeafNodes(CATEGORY_COUNT, terms);
            persistCategories(leafNodes, article);
        } else {
            log.error("Taxonomy server returned 0 terms. Cannot populate Categories. " + doi);
        }
    }
}

Example 29 with Article

use of org.ambraproject.rhino.model.Article in project rhino by PLOS.

the class HibernatePersistenceServiceImpl method persistArticle.

@Override
public Article persistArticle(Doi doi) {
    String articleDoi = doi.getName();
    Article article = hibernateTemplate.execute(session -> {
        Query selectQuery = session.createQuery("FROM Article WHERE doi = :doi");
        selectQuery.setParameter("doi", articleDoi);
        return (Article) selectQuery.uniqueResult();
    });
    if (article == null) {
        article = new Article();
        article.setDoi(articleDoi);
        hibernateTemplate.save(article);
    }
    return article;
}

Example 30 with Article

use of org.ambraproject.rhino.model.Article in project rhino by PLOS.

the class IngestionServiceTest method createStubArticleItem.

private static ArticleItem createStubArticleItem() {
    ArticleItem articleItem = new ArticleItem();
    ArticleIngestion articleIngestion = new ArticleIngestion();
    Article article = new Article();
    article.setDoi("test");
    articleItem.setIngestion(articleIngestion);
    articleIngestion.setArticle(article);
    return articleItem;
}