Examples with Article org.ambraproject.rhino.model.Article used on opensource projects

Example 21 with Article

use of org.ambraproject.rhino.model.Article in project rhino by PLOS.

the class ArticleCrudServiceImpl method getRawCategoriesAndText.

/**
   * {@inheritDoc}
   *
   * @param articleId
   */
@Override
public String getRawCategoriesAndText(final ArticleIdentifier articleId) throws IOException {
    Article article = readArticle(articleId);
    ArticleRevision revision = readLatestRevision(article);
    Document manuscriptXml = getManuscriptXml(revision.getIngestion());
    List<String> rawTermsAndText = taxonomyService.getRawTerms(manuscriptXml, article, true);
    StringBuilder cleanedTermsAndText = new StringBuilder();
    cleanedTermsAndText.append("<pre>");
    // HTML-escape the text, which is in the first element of the result array
    cleanedTermsAndText.append(StringEscapeUtils.escapeHtml4(rawTermsAndText.get(0)));
    cleanedTermsAndText.append("\n");
    for (int i = 1; i < rawTermsAndText.size(); i++) {
        String term = rawTermsAndText.get(i).replaceAll("<TERM>", "").replaceAll("</TERM>", "");
        cleanedTermsAndText.append("\n");
        cleanedTermsAndText.append(term);
    }
    cleanedTermsAndText.append("</pre>");
    return cleanedTermsAndText.toString();
}

Example 22 with Article

use of org.ambraproject.rhino.model.Article in project rhino by PLOS.

the class ArticleCrudServiceImpl method getLatestRevision.

@Override
public Optional<ArticleRevision> getLatestRevision(Article article) {
    Integer maxRevisionNumber = hibernateTemplate.execute(session -> {
        Query query = session.createQuery("" + "SELECT MAX(rev.revisionNumber) " + "FROM ArticleRevision rev, ArticleItem item " + "WHERE item.doi = :doi " + "  AND rev.ingestion = item.ingestion");
        query.setParameter("doi", Doi.create(article.getDoi()).getName());
        return (Integer) query.uniqueResult();
    });
    if (maxRevisionNumber == null)
        return Optional.empty();
    return Optional.ofNullable(hibernateTemplate.execute(session -> {
        Query query = session.createQuery("" + "FROM ArticleRevision as av " + "WHERE av.ingestion.article = :article " + "AND av.revisionNumber = :latestRevision");
        query.setParameter("article", article);
        query.setParameter("latestRevision", maxRevisionNumber);
        return (ArticleRevision) query.uniqueResult();
    }));
}

Example 23 with Article

use of org.ambraproject.rhino.model.Article in project rhino by PLOS.

the class ArticleCrudServiceImpl method serveRawCategories.

/**
   * {@inheritDoc}
   */
@Override
public ServiceResponse<List<String>> serveRawCategories(final ArticleIdentifier articleId) throws IOException {
    Article article = readArticle(articleId);
    ArticleRevision revision = readLatestRevision(article);
    Document manuscriptXml = getManuscriptXml(revision.getIngestion());
    List<String> rawTerms = taxonomyService.getRawTerms(manuscriptXml, article, false);
    List<String> cleanedTerms = new ArrayList<>();
    for (String term : rawTerms) {
        term = term.replaceAll("<TERM>", "").replaceAll("</TERM>", "");
        cleanedTerms.add(term);
    }
    return ServiceResponse.serveView(cleanedTerms);
}

Example 24 with Article

use of org.ambraproject.rhino.model.Article in project rhino by PLOS.

the class ArticleCrudServiceImpl method fromRelatedArticleLink.

private ArticleRelationship fromRelatedArticleLink(Article article, RelatedArticleLink ral) {
    ArticleRelationship ar = new ArticleRelationship();
    ar.setSourceArticle(Objects.requireNonNull(article));
    Article targetArticle = getArticle(ral.getArticleId()).orElse(null);
    ar.setTargetArticle(Objects.requireNonNull(targetArticle));
    ar.setType(Objects.requireNonNull(ral.getType()));
    return ar;
}

Example 25 with Article

use of org.ambraproject.rhino.model.Article in project rhino by PLOS.

the class ArticleCrudServiceImpl method serveRevisions.

@Override
public ServiceResponse<List<ArticleRevisionView>> serveRevisions(ArticleIdentifier id) {
    Article article = readArticle(id);
    List<ArticleRevision> revisions = (List<ArticleRevision>) hibernateTemplate.find("FROM ArticleRevision WHERE ingestion.article = ? ORDER BY revisionNumber", article);
    List<ArticleRevisionView> views = Lists.transform(revisions, ArticleRevisionView::getView);
    return ServiceResponse.serveView(views);
}