Examples with RelatedArticleLink org.ambraproject.rhino.model.article.RelatedArticleLink used on opensource projects

Example 1 with RelatedArticleLink

use of org.ambraproject.rhino.model.article.RelatedArticleLink in project rhino by PLOS.

the class ArticleCrudServiceImpl method refreshArticleRelationships.

@Override
public void refreshArticleRelationships(ArticleRevision sourceArticleRev) {
    ArticleXml sourceArticleXml = new ArticleXml(getManuscriptXml(sourceArticleRev.getIngestion()));
    Article sourceArticle = sourceArticleRev.getIngestion().getArticle();
    List<RelatedArticleLink> xmlRelationships = sourceArticleXml.parseRelatedArticles();
    List<ArticleRelationship> dbRelationships = getRelationshipsFrom(ArticleIdentifier.create(sourceArticle.getDoi()));
    dbRelationships.forEach(ar -> hibernateTemplate.delete(ar));
    xmlRelationships.forEach(ar -> {
        getArticle(ar.getArticleId()).ifPresent((Article relatedArticle) -> {
            hibernateTemplate.save(fromRelatedArticleLink(sourceArticle, ar));
            getLatestRevision(relatedArticle).ifPresent((ArticleRevision relatedArticleRev) -> {
                ArticleXml relatedArticleXml = new ArticleXml(getManuscriptXml(relatedArticleRev.getIngestion()));
                Set<ArticleRelationship> inboundDbRelationships = getRelationshipsTo(ArticleIdentifier.create(sourceArticle.getDoi())).stream().filter(dbAr -> dbAr.getSourceArticle().equals(relatedArticle)).collect(Collectors.toSet());
                relatedArticleXml.parseRelatedArticles().stream().filter(ral -> ral.getArticleId().getDoiName().equals(sourceArticle.getDoi())).map(ral -> fromRelatedArticleLink(relatedArticle, ral)).filter(relatedAr -> !inboundDbRelationships.contains(relatedAr)).forEach(relatedAr -> hibernateTemplate.save(relatedAr));
            });
        });
    });
}

Example 2 with RelatedArticleLink

use of org.ambraproject.rhino.model.article.RelatedArticleLink in project rhino by PLOS.

the class IngestionTest method compareRelationshipLists.

private void compareRelationshipLists(AssertionCollector results, List<RelatedArticleLink> actual, List<RelatedArticleLink> expected) {
    Map<ArticleIdentifier, RelatedArticleLink> actualMap = Maps.uniqueIndex(actual, RelatedArticleLink::getArticleId);
    Set<ArticleIdentifier> actualDois = actualMap.keySet();
    Map<ArticleIdentifier, RelatedArticleLink> expectedMap = Maps.uniqueIndex(expected, RelatedArticleLink::getArticleId);
    Set<ArticleIdentifier> expectedDois = expectedMap.keySet();
    for (ArticleIdentifier missingDoi : Sets.difference(expectedDois, actualDois)) {
        compare(results, ArticleRelationship.class, "otherArticleDoi", null, missingDoi);
    }
    for (ArticleIdentifier extraDoi : Sets.difference(actualDois, expectedDois)) {
        compare(results, ArticleRelationship.class, "otherArticleDoi", extraDoi, null);
    }
    for (ArticleIdentifier doi : Sets.intersection(actualDois, expectedDois)) {
        compare(results, ArticleRelationship.class, "otherArticleDoi", doi, doi);
        compare(results, ArticleRelationship.class, "type", actualMap.get(doi).getType(), expectedMap.get(doi).getType());
    }
}

Example 3 with RelatedArticleLink

use of org.ambraproject.rhino.model.article.RelatedArticleLink in project rhino by PLOS.

the class ArticleXml method parseRelatedArticles.

/**
   * Parse {@link RelatedArticleLink} objects from XML.
   * <p/>
   * These are returned from here, rather than set in the {@link ArticleMetadata} object during normal parsing, so they
   * can get special handling.
   *
   * @return the article relationships defined by the XML
   */
public List<RelatedArticleLink> parseRelatedArticles() {
    List<Node> relatedArticleNodes = readNodeList("//related-article");
    List<RelatedArticleLink> relatedArticles = Lists.newArrayListWithCapacity(relatedArticleNodes.size());
    for (Node relatedArticleNode : relatedArticleNodes) {
        String type = readString("attribute::related-article-type", relatedArticleNode);
        String doi = readHrefAttribute(relatedArticleNode);
        if (doi != null) {
            RelatedArticleLink relatedArticle = new RelatedArticleLink(type, ArticleIdentifier.create(doi));
            relatedArticles.add(relatedArticle);
        } else {
            throw new XmlContentException("Related article has no doi. node " + relatedArticleNode.getAttributes().getNamedItem("id"));
        }
    }
    return relatedArticles;
}