Examples with ArticleXml org.ambraproject.rhino.content.xml.ArticleXml used on opensource projects

Example 1 with ArticleXml

use of org.ambraproject.rhino.content.xml.ArticleXml in project rhino by PLOS.

the class IngestionService method createIngestPackage.

private IngestPackage createIngestPackage(Archive archive, Optional<String> bucketName) throws IOException {
    ManifestXml manifestXml = getManifestXml(archive);
    ImmutableSet<String> entryNames = archive.getEntryNames();
    manifestXml.validateManifestCompleteness(entryNames);
    String manuscriptEntry = getManuscriptEntry(entryNames, manifestXml);
    Document document = getDocument(archive, manuscriptEntry);
    ArticleXml parsedArticle = new ArticleXml(document);
    ArticleCustomMetadata customMetadata = customMetadataExtractorFactory.parse(document).build();
    ArticlePackage articlePackage = new ArticlePackageBuilder(resolveBucketName(bucketName), archive, parsedArticle, manifestXml).build();
    articlePackage.validateAssetCompleteness(parsedArticle.findAllAssetNodes().getDois());
    ArticleMetadata articleMetadata = parsedArticle.build();
    return new IngestPackage(articlePackage, articleMetadata, customMetadata);
}

Example 2 with ArticleXml

use of org.ambraproject.rhino.content.xml.ArticleXml in project rhino by PLOS.

the class ArticleCrudServiceImpl method refreshArticleRelationships.

@Override
public void refreshArticleRelationships(ArticleRevision sourceArticleRev) {
    ArticleXml sourceArticleXml = new ArticleXml(getManuscriptXml(sourceArticleRev.getIngestion()));
    Article sourceArticle = sourceArticleRev.getIngestion().getArticle();
    List<RelatedArticleLink> xmlRelationships = sourceArticleXml.parseRelatedArticles();
    List<ArticleRelationship> dbRelationships = getRelationshipsFrom(ArticleIdentifier.create(sourceArticle.getDoi()));
    dbRelationships.forEach(ar -> hibernateTemplate.delete(ar));
    xmlRelationships.forEach(ar -> {
        getArticle(ar.getArticleId()).ifPresent((Article relatedArticle) -> {
            hibernateTemplate.save(fromRelatedArticleLink(sourceArticle, ar));
            getLatestRevision(relatedArticle).ifPresent((ArticleRevision relatedArticleRev) -> {
                ArticleXml relatedArticleXml = new ArticleXml(getManuscriptXml(relatedArticleRev.getIngestion()));
                Set<ArticleRelationship> inboundDbRelationships = getRelationshipsTo(ArticleIdentifier.create(sourceArticle.getDoi())).stream().filter(dbAr -> dbAr.getSourceArticle().equals(relatedArticle)).collect(Collectors.toSet());
                relatedArticleXml.parseRelatedArticles().stream().filter(ral -> ral.getArticleId().getDoiName().equals(sourceArticle.getDoi())).map(ral -> fromRelatedArticleLink(relatedArticle, ral)).filter(relatedAr -> !inboundDbRelationships.contains(relatedAr)).forEach(relatedAr -> hibernateTemplate.save(relatedAr));
            });
        });
    });
}