Examples with ApplicationModule org.apache.airavata.model.appcatalog.appdeployment.ApplicationModule used on opensource projects

Example 1 with ApplicationModule

use of org.apache.airavata.model.appcatalog.appdeployment.ApplicationModule in project airavata by apache.

the class AiravataIT method testAddApplication.

@org.testng.annotations.Test(priority = 4)
public void testAddApplication() {
    try {
        logger.info("testAddApplication() -> Adding test application......");
        applicationProperties = setup.getApplicationRegister().addApplications();
        ;
        Assert.assertNotNull(applicationProperties);
        ApplicationModule applicationModule = setup.getApplicationRegister().getApplicationModule(applicationProperties.getApplicationModuleId());
        Assert.assertNotNull(applicationModule);
        Assert.assertEquals(applicationModule.getAppModuleName(), TestFrameworkConstants.AppcatalogConstants.LOCAL_ECHO_NAME);
        Assert.assertEquals(applicationModule.getAppModuleVersion(), LOCAL_ECHO_VERSION);
        Assert.assertEquals(applicationModule.getAppModuleDescription(), TestFrameworkConstants.AppcatalogConstants.LOCAL_ECHO_DESCRIPTION);
        Assert.assertEquals(applicationModule.getAppModuleName(), TestFrameworkConstants.AppcatalogConstants.LOCAL_ECHO_NAME);
        ApplicationInterfaceDescription applicationInterfaceDescription = setup.getApplicationRegister().getApplicationInterfaceDescription(applicationProperties.getApplicationInterfaceId());
        Assert.assertNotNull(applicationInterfaceDescription);
        Assert.assertEquals(applicationInterfaceDescription.getApplicationName(), TestFrameworkConstants.AppcatalogConstants.LOCAL_ECHO_NAME);
        Assert.assertEquals(applicationInterfaceDescription.getApplicationDescription(), TestFrameworkConstants.AppcatalogConstants.LOCAL_ECHO_DESCRIPTION);
        InputDataObjectType input = applicationInterfaceDescription.getApplicationInputs().get(0);
        Assert.assertNotNull(input);
        Assert.assertEquals(input.getName(), INPUT_NAME);
        Assert.assertEquals(input.getValue(), INPUT_VALUE);
        Assert.assertEquals(input.getType(), DataType.STRING);
        Assert.assertEquals(input.getApplicationArgument(), null);
        Assert.assertEquals(input.getInputOrder(), 0);
        Assert.assertEquals(input.isIsRequired(), true);
        Assert.assertEquals(input.isRequiredToAddedToCommandLine(), true);
        Assert.assertEquals(input.isStandardInput(), false);
        Assert.assertEquals(input.getUserFriendlyDescription(), INPUT_DESC);
        Assert.assertEquals(input.getMetaData(), null);
        List<OutputDataObjectType> outputDataObjectTypes = applicationInterfaceDescription.getApplicationOutputs();
        Assert.assertNotNull(outputDataObjectTypes.get(0));
        Assert.assertEquals(outputDataObjectTypes.get(0).getName(), STDERR_NAME);
        Assert.assertEquals(outputDataObjectTypes.get(0).getValue(), STDERR_VALUE);
        Assert.assertEquals(outputDataObjectTypes.get(0).getType(), DataType.URI);
        Assert.assertEquals(outputDataObjectTypes.get(0).isIsRequired(), true);
        Assert.assertEquals(outputDataObjectTypes.get(0).isRequiredToAddedToCommandLine(), true);
        Assert.assertEquals(outputDataObjectTypes.get(0).getApplicationArgument(), null);
        Assert.assertNotNull(outputDataObjectTypes.get(1));
        Assert.assertEquals(outputDataObjectTypes.get(1).getName(), STDOUT_NAME);
        Assert.assertEquals(outputDataObjectTypes.get(1).getValue(), STDOUT_VALUE);
        Assert.assertEquals(outputDataObjectTypes.get(1).getType(), DataType.URI);
        Assert.assertEquals(outputDataObjectTypes.get(1).isIsRequired(), true);
        Assert.assertEquals(outputDataObjectTypes.get(1).isRequiredToAddedToCommandLine(), true);
        Assert.assertEquals(outputDataObjectTypes.get(1).getApplicationArgument(), null);
        ApplicationDeploymentDescription applicationDeploymentDescription = setup.getApplicationRegister().getApplicationDeploymentDescription(applicationProperties.getApplicationDeployId());
        Assert.assertNotNull(applicationDeploymentDescription);
        Assert.assertEquals(applicationDeploymentDescription.getExecutablePath(), TestFrameworkConstants.LOCAL_ECHO_JOB_FILE_PATH);
        Assert.assertEquals(applicationDeploymentDescription.getParallelism(), ApplicationParallelismType.SERIAL);
        Assert.assertEquals(applicationDeploymentDescription.getAppDeploymentDescription(), TestFrameworkConstants.AppcatalogConstants.LOCAL_ECHO_DESCRIPTION);
        Assert.assertEquals(applicationDeploymentDescription.getModuleLoadCmds(), null);
        Assert.assertEquals(applicationDeploymentDescription.getPostJobCommands(), null);
        Assert.assertEquals(applicationDeploymentDescription.getPreJobCommands(), null);
        logger.info("testAddApplication() -> Adding test application." + applicationProperties.toString());
    } catch (Exception e) {
        logger.error("Error occured while testAddApplication", e);
        Assert.fail();
    }
}

Example 2 with ApplicationModule

use of org.apache.airavata.model.appcatalog.appdeployment.ApplicationModule in project airavata by apache.

the class ApplicationRegister method createApplicationModule.

protected ApplicationModule createApplicationModule(String appModuleName, String appModuleVersion, String appModuleDescription) {
    ApplicationModule module = new ApplicationModule();
    module.setAppModuleDescription(appModuleDescription);
    module.setAppModuleName(appModuleName);
    module.setAppModuleVersion(appModuleVersion);
    return module;
}

Example 3 with ApplicationModule

use of org.apache.airavata.model.appcatalog.appdeployment.ApplicationModule in project airavata by apache.

the class RegistryServerHandler method getAllAppModules.

/**
 * Fetch all Application Module Descriptions.
 *
 * @param gatewayId ID of the gateway which need to list all available application deployment documentation.
 * @return list
 * Returns the list of all Application Module Objects.
 */
@Override
public List<ApplicationModule> getAllAppModules(String gatewayId) throws RegistryServiceException, TException {
    if (!isGatewayExistInternal(gatewayId)) {
        logger.error("Gateway does not exist.Please provide a valid gateway id...");
        throw new RegistryServiceException("Gateway does not exist.Please provide a valid gateway id...");
    }
    try {
        appCatalog = RegistryFactory.getAppCatalog();
        List<ApplicationModule> moduleList = appCatalog.getApplicationInterface().getAllApplicationModules(gatewayId);
        logger.debug("Airavata retrieved modules for gateway id : " + gatewayId);
        return moduleList;
    } catch (AppCatalogException e) {
        logger.error("Error while retrieving all application modules...", e);
        RegistryServiceException exception = new RegistryServiceException();
        exception.setMessage("Error while retrieving all application modules. More info : " + e.getMessage());
        throw exception;
    }
}

Example 4 with ApplicationModule

use of org.apache.airavata.model.appcatalog.appdeployment.ApplicationModule in project airavata by apache.

the class DocumentCreatorNew method createStampedeAmberDocs.

public String createStampedeAmberDocs() throws InvalidRequestException, AiravataClientException, AiravataSystemException, TException, AppCatalogException {
    ComputeResourceDescription host = DocumentCreatorUtils.createComputeResourceDescription(stampedeHostAddress, null, null);
    host.addToHostAliases(stampedeHostAddress);
    host.addToIpAddresses(stampedeHostAddress);
    host.setComputeResourceId(client.registerComputeResource(authzToken, host));
    ResourceJobManager resourceJobManager = DocumentCreatorUtils.createResourceJobManager(ResourceJobManagerType.SLURM, "/usr/bin/", null, "push");
    SSHJobSubmission sshJobSubmission = new SSHJobSubmission();
    sshJobSubmission.setResourceJobManager(resourceJobManager);
    sshJobSubmission.setSecurityProtocol(SecurityProtocol.GSI);
    sshJobSubmission.setSshPort(2222);
    client.addSSHJobSubmissionDetails(authzToken, host.getComputeResourceId(), 1, sshJobSubmission);
    SCPDataMovement scpDataMovement = new SCPDataMovement();
    scpDataMovement.setSecurityProtocol(SecurityProtocol.GSI);
    scpDataMovement.setSshPort(22);
    client.addSCPDataMovementDetails(authzToken, host.getComputeResourceId(), 1, scpDataMovement);
    ApplicationModule amodule = DocumentCreatorUtils.createApplicationModule("Amber", "12.0", null);
    amodule.setAppModuleId(client.registerApplicationModule(authzToken, DEFAULT_GATEWAY, amodule));
    ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
    application.setApplicationName("AmberBR2");
    application.addToApplicationModules(amodule.getAppModuleId());
    application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_HEAT_RST", "AMBER_HEAT_RST", null, null, DataType.URI));
    application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_PROD_IN", "AMBER_PROD_IN", null, null, DataType.URI));
    application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("AMBER_PRMTOP", "AMBER_PRMTOP", null, null, DataType.URI));
    application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.info", null, DataType.URI));
    application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.mdcrd", null, DataType.URI));
    application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.out", null, DataType.URI));
    application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("AMBER_Prod.rst", null, DataType.URI));
    application.setApplicationInterfaceId(client.registerApplicationInterface(authzToken, DEFAULT_GATEWAY, application));
    ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), amodule.getAppModuleId(), "/home1/01437/ogce/production/app_wrappers/amber_wrapper.sh", ApplicationParallelismType.SERIAL, "AmberStampede");
    deployment.setAppDeploymentId(client.registerApplicationDeployment(authzToken, DEFAULT_GATEWAY, deployment));
    client.addGatewayComputeResourcePreference(authzToken, getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/home1/01437/ogce", "TG-STA110014S", false, null, null, null));
    return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();
}

Example 5 with ApplicationModule

use of org.apache.airavata.model.appcatalog.appdeployment.ApplicationModule in project airavata by apache.

the class DocumentCreatorNew method createLocalHostDocs.

public String createLocalHostDocs() throws AppCatalogException, InvalidRequestException, AiravataClientException, AiravataSystemException, TException {
    // Define compute resource host
    ComputeResourceDescription host = DocumentCreatorUtils.createComputeResourceDescription("localhost", new ArrayList<String>(Arrays.asList(new String[] { "127.0.0.1" })), new ArrayList<String>(Arrays.asList(new String[] { "127.0.0.1" })));
    // host.setIsEmpty(true);
    host.setComputeResourceId(client.registerComputeResource(authzToken, host));
    LOCALSubmission localSubmission = new LOCALSubmission();
    ResourceJobManager resourceJobManager = DocumentCreatorUtils.createResourceJobManager(ResourceJobManagerType.FORK, null, null, null);
    localSubmission.setResourceJobManager(resourceJobManager);
    client.addLocalSubmissionDetails(authzToken, host.getComputeResourceId(), 1, localSubmission);
    LOCALDataMovement localDataMovement = new LOCALDataMovement();
    client.addLocalDataMovementDetails(authzToken, host.getComputeResourceId(), 1, localDataMovement);
    // Define application module
    ApplicationModule module = DocumentCreatorUtils.createApplicationModule("echo", "1.0.0", "Local host echo applications");
    module.setAppModuleId(client.registerApplicationModule(authzToken, DEFAULT_GATEWAY, module));
    // Define application interfaces
    ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
    // application.setIsEmpty(false);
    application.setApplicationName("SimpleEcho0");
    application.addToApplicationModules(module.getAppModuleId());
    application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("echo_input", "echo_input", "Echo Input Data", null, DataType.STRING));
    application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("echo_output", null, DataType.STRING));
    application.setApplicationInterfaceId(client.registerApplicationInterface(authzToken, DEFAULT_GATEWAY, application));
    // Define application deployment
    ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module.getAppModuleId(), "/bin/echo", ApplicationParallelismType.SERIAL, "Local echo app depoyment");
    deployment.setAppDeploymentId(client.registerApplicationDeployment(authzToken, DEFAULT_GATEWAY, deployment));
    // Define gateway profile
    ComputeResourcePreference computeResourcePreference = DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/tmp", null, false, null, null, null);
    gatewayResourceProfile = new GatewayResourceProfile();
    // gatewayResourceProfile.setGatewayID("default");
    gatewayResourceProfile.setGatewayID(DEFAULT_GATEWAY);
    gatewayResourceProfile.addToComputeResourcePreferences(computeResourcePreference);
    String gatewayId = client.registerGatewayResourceProfile(authzToken, gatewayResourceProfile);
    gatewayResourceProfile.setGatewayID(gatewayId);
    client.addGatewayComputeResourcePreference(authzToken, gatewayResourceProfile.getGatewayID(), host.getComputeResourceId(), computeResourcePreference);
    return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();
}