Examples with ApplicationInterfaceDescription org.apache.airavata.model.appcatalog.appinterface.ApplicationInterfaceDescription used on opensource projects

Example 11 with ApplicationInterfaceDescription

use of org.apache.airavata.model.appcatalog.appinterface.ApplicationInterfaceDescription in project airavata by apache.

the class DocumentCreatorNew method createSlumWRFDocs.

public String createSlumWRFDocs() throws AppCatalogException, TException {
    ComputeResourceDescription host = DocumentCreatorUtils.createComputeResourceDescription(stampedeHostAddress, null, null);
    host.addToHostAliases(stampedeHostAddress);
    host.addToIpAddresses(stampedeHostAddress);
    host.setComputeResourceId(client.registerComputeResource(authzToken, host));
    ResourceJobManager resourceJobManager = DocumentCreatorUtils.createResourceJobManager(ResourceJobManagerType.SLURM, "/usr/bin/", null, "push");
    SSHJobSubmission sshJobSubmission = new SSHJobSubmission();
    sshJobSubmission.setResourceJobManager(resourceJobManager);
    sshJobSubmission.setSecurityProtocol(SecurityProtocol.GSI);
    sshJobSubmission.setSshPort(2222);
    client.addSSHJobSubmissionDetails(authzToken, host.getComputeResourceId(), 1, sshJobSubmission);
    SCPDataMovement scpDataMovement = new SCPDataMovement();
    scpDataMovement.setSecurityProtocol(SecurityProtocol.GSI);
    scpDataMovement.setSshPort(22);
    client.addSCPDataMovementDetails(authzToken, host.getComputeResourceId(), 1, scpDataMovement);
    client.addSCPDataMovementDetails(authzToken, host.getComputeResourceId(), 1, scpDataMovement);
    client.addGatewayComputeResourcePreference(authzToken, getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/home1/01437/ogce", "TG-STA110014S", false, null, null, null));
    ApplicationModule module2 = DocumentCreatorUtils.createApplicationModule("wrf", "1.0.0", null);
    module2.setAppModuleId(client.registerApplicationModule(authzToken, DEFAULT_GATEWAY, module2));
    ApplicationInterfaceDescription application2 = new ApplicationInterfaceDescription();
    // application2.setIsEmpty(false);
    application2.setApplicationName("WRF");
    application2.addToApplicationModules(module2.getAppModuleId());
    application2.addToApplicationInputs(DocumentCreatorUtils.createAppInput("WRF_Namelist", "WRF_Namelist", null, null, DataType.URI));
    application2.addToApplicationInputs(DocumentCreatorUtils.createAppInput("WRF_Boundary_File", "WRF_Boundary_File", null, null, DataType.URI));
    application2.addToApplicationInputs(DocumentCreatorUtils.createAppInput("WRF_Input_File", "WRF_Input_File", null, null, DataType.URI));
    application2.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("WRF_Output", null, DataType.URI));
    application2.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("WRF_Execution_Log", null, DataType.URI));
    application2.setApplicationInterfaceId(client.registerApplicationInterface(authzToken, DEFAULT_GATEWAY, application2));
    ApplicationDeploymentDescription deployment2 = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module2.getAppModuleId(), "/home1/01437/ogce/production/app_wrappers/wrf_wrapper.sh", ApplicationParallelismType.MPI, "WRF");
    deployment2.setAppDeploymentId(client.registerApplicationDeployment(authzToken, DEFAULT_GATEWAY, deployment2));
    return host.getComputeResourceId() + "," + application2.getApplicationInterfaceId();
}

Example 12 with ApplicationInterfaceDescription

use of org.apache.airavata.model.appcatalog.appinterface.ApplicationInterfaceDescription in project airavata by apache.

the class ApplicationInterfaceImpl method getApplicationInterfaces.

@Override
public List<ApplicationInterfaceDescription> getApplicationInterfaces(Map<String, String> filters) throws AppCatalogException {
    List<ApplicationInterfaceDescription> appInterfaces = new ArrayList<ApplicationInterfaceDescription>();
    try {
        AppInterfaceResource resource = new AppInterfaceResource();
        for (String fieldName : filters.keySet()) {
            if (fieldName.equals(AppCatAbstractResource.ApplicationInterfaceConstants.APPLICATION_NAME)) {
                List<AppCatalogResource> resources = resource.get(AppCatAbstractResource.ApplicationInterfaceConstants.APPLICATION_NAME, filters.get(fieldName));
                appInterfaces = AppCatalogThriftConversion.getAppInterfaceDescList(resources);
            } else {
                logger.error("Unsupported field name for app interface.", new IllegalArgumentException());
                throw new IllegalArgumentException("Unsupported field name '" + fieldName + "' for app interface.");
            }
        }
    } catch (Exception e) {
        logger.error("Error while retrieving app interface list...", e);
        throw new AppCatalogException(e);
    }
    return appInterfaces;
}

Example 13 with ApplicationInterfaceDescription

use of org.apache.airavata.model.appcatalog.appinterface.ApplicationInterfaceDescription in project airavata by apache.

the class OrchestratorServerHandler method getModuleId.

private String getModuleId(AppCatalog appCatalog, String applicationId) throws AppCatalogException, OrchestratorException {
    ApplicationInterfaceDescription applicationInterface = appCatalog.getApplicationInterface().getApplicationInterface(applicationId);
    List<String> applicationModules = applicationInterface.getApplicationModules();
    if (applicationModules.size() == 0) {
        throw new OrchestratorException("No modules defined for application " + applicationId);
    }
    // AiravataAPI airavataAPI = getAiravataAPI();
    String selectedModuleId = applicationModules.get(0);
    return selectedModuleId;
}

Example 14 with ApplicationInterfaceDescription

use of org.apache.airavata.model.appcatalog.appinterface.ApplicationInterfaceDescription in project airavata by apache.

the class SimpleOrchestratorImpl method isArchive.

private boolean isArchive(ProcessModel processModel, String gatewayId) throws AppCatalogException {
    AppCatalog appCatalog = RegistryFactory.getAppCatalog();
    ApplicationInterfaceDescription appInterface = appCatalog.getApplicationInterface().getApplicationInterface(processModel.getApplicationInterfaceId());
    return appInterface.isArchiveWorkingDirectory();
}

Example 15 with ApplicationInterfaceDescription

use of org.apache.airavata.model.appcatalog.appinterface.ApplicationInterfaceDescription in project airavata by apache.

the class DocumentCreatorNew method createSGEDocs.

public String createSGEDocs() throws AppCatalogException, InvalidRequestException, AiravataClientException, AiravataSystemException, TException {
    ComputeResourceDescription host = DocumentCreatorUtils.createComputeResourceDescription(lonestarHostAddress, null, null);
    host.addToHostAliases(lonestarHostAddress);
    host.addToIpAddresses(lonestarHostAddress);
    host.setComputeResourceId(client.registerComputeResource(authzToken, host));
    ResourceJobManager resourceJobManager = DocumentCreatorUtils.createResourceJobManager(ResourceJobManagerType.UGE, "/opt/sge6.2/bin/lx24-amd64/", null, null);
    SSHJobSubmission sshJobSubmission = new SSHJobSubmission();
    sshJobSubmission.setResourceJobManager(resourceJobManager);
    sshJobSubmission.setSecurityProtocol(SecurityProtocol.GSI);
    sshJobSubmission.setSshPort(22);
    client.addSSHJobSubmissionDetails(authzToken, host.getComputeResourceId(), 1, sshJobSubmission);
    SCPDataMovement scpDataMovement = new SCPDataMovement();
    scpDataMovement.setSecurityProtocol(SecurityProtocol.GSI);
    scpDataMovement.setSshPort(22);
    client.addSCPDataMovementDetails(authzToken, host.getComputeResourceId(), 1, scpDataMovement);
    ApplicationModule module = DocumentCreatorUtils.createApplicationModule("echo", "1.4", null);
    module.setAppModuleId(client.registerApplicationModule(authzToken, DEFAULT_GATEWAY, module));
    ApplicationInterfaceDescription application = new ApplicationInterfaceDescription();
    // application.setIsEmpty(false);
    application.setApplicationName("SimpleEcho4");
    application.addToApplicationModules(module.getAppModuleId());
    application.addToApplicationInputs(DocumentCreatorUtils.createAppInput("echo_input", "echo_input", null, null, DataType.STRING));
    application.addToApplicationOutputs(DocumentCreatorUtils.createAppOutput("echo_output", null, DataType.STRING));
    application.setApplicationInterfaceId(client.registerApplicationInterface(authzToken, DEFAULT_GATEWAY, application));
    ApplicationDeploymentDescription deployment = DocumentCreatorUtils.createApplicationDeployment(host.getComputeResourceId(), module.getAppModuleId(), "/bin/echo", ApplicationParallelismType.SERIAL, "EchoLocal");
    deployment.setAppDeploymentId(client.registerApplicationDeployment(authzToken, DEFAULT_GATEWAY, deployment));
    client.addGatewayComputeResourcePreference(authzToken, getGatewayResourceProfile().getGatewayID(), host.getComputeResourceId(), DocumentCreatorUtils.createComputeResourcePreference(host.getComputeResourceId(), "/home1/01437/ogce", "TG-STA110014S", false, null, null, null));
    return host.getComputeResourceId() + "," + application.getApplicationInterfaceId();
}