Examples with DataType org.apache.airavata.model.application.io.DataType used on opensource projects

Example 11 with DataType

use of org.apache.airavata.model.application.io.DataType in project airavata by apache.

the class SimpleOrchestratorImpl method createAndSaveInputDataStagingTasks.

public List<String> createAndSaveInputDataStagingTasks(ProcessModel processModel, String gatewayId) throws RegistryException, AiravataException {
    List<String> dataStagingTaskIds = new ArrayList<>();
    List<InputDataObjectType> processInputs = processModel.getProcessInputs();
    sortByInputOrder(processInputs);
    if (processInputs != null) {
        for (InputDataObjectType processInput : processInputs) {
            DataType type = processInput.getType();
            switch(type) {
                case STDERR:
                    break;
                case STDOUT:
                    break;
                case URI:
                case URI_COLLECTION:
                    try {
                        TaskModel inputDataStagingTask = getInputDataStagingTask(processModel, processInput, gatewayId);
                        String taskId = (String) orchestratorContext.getRegistry().getExperimentCatalog().add(ExpCatChildDataType.TASK, inputDataStagingTask, processModel.getProcessId());
                        inputDataStagingTask.setTaskId(taskId);
                        dataStagingTaskIds.add(inputDataStagingTask.getTaskId());
                    } catch (TException | AppCatalogException | TaskException e) {
                        throw new RegistryException("Error while serializing data staging sub task model");
                    }
                    break;
                default:
                    // nothing to do
                    break;
            }
        }
    }
    return dataStagingTaskIds;
}

Example 12 with DataType

use of org.apache.airavata.model.application.io.DataType in project airavata by apache.

the class OutputNode method getParameterType.

/**
 * Returns the type of the parameter
 *
 * @return The type of the parameter (e.g. string, int)
 */
@Override
public DataType getParameterType() {
    List<DataEdge> edges = getEdges();
    DataType parameterType = super.getParameterType();
    if (parameterType == null && getEdges().size() > 0) {
        Edge edge = edges.get(0);
        WSPort fromPort = (WSPort) edge.getFromPort();
        setParameterType(fromPort.getType());
    }
    return parameterType;
}

Example 13 with DataType

use of org.apache.airavata.model.application.io.DataType in project airavata by apache.

the class OutputNode method edgeWasAdded.

/**
 * Called whan an Edge was added to the parameter port. Change the name of this node.
 *
 * @throws GraphException
 *
 * @see org.apache.airavata.workflow.model.graph.impl.NodeImpl#edgeWasAdded(org.apache.airavata.workflow.model.graph.impl.EdgeImpl)
 */
@Override
protected void edgeWasAdded(Edge edge) throws GraphException {
    super.edgeWasAdded(edge);
    // TODO organize
    Port fromPort = edge.getFromPort();
    if (edge instanceof DataEdge) {
        DataPort fromDataPort = (DataPort) fromPort;
        DataType fromType = fromDataPort.getType();
        List<DataEdge> edges = getEdges();
        if (edges.size() == 1) {
            setParameterType(fromType);
            if (!isConfigured() && fromDataPort instanceof WSPort) {
                setName(fromDataPort.getName());
                WSComponentPort componentPort = ((WSPort) fromDataPort).getComponentPort();
                setDescription(componentPort.getDescription());
                setMetadata(componentPort.getAppinfo());
            }
        } else {
            throw new GraphException("Cannot connect more than one output ports to the output parameter.");
        }
    }
}

Example 14 with DataType

use of org.apache.airavata.model.application.io.DataType in project airavata by apache.

the class EndForEachNode method edgeWasAdded.

/**
 * @throws GraphException
 * @see org.apache.airavata.workflow.model.graph.impl.NodeImpl#edgeWasAdded(org.apache.airavata.workflow.model.graph.Edge)
 */
@Override
protected void edgeWasAdded(Edge edge) throws GraphException {
    // XXX cannot detect if the type is array or not from WSDL at this
    // point. so no check here.
    // super.edgeWasAdded(edge);
    Port fromPort = edge.getFromPort();
    Port toPort = edge.getToPort();
    if (edge instanceof DataEdge) {
        if (fromPort instanceof EPRPort) {
            // TODO
            return;
        }
        DataPort fromDataPort = (DataPort) fromPort;
        DataPort toDataPort = (DataPort) toPort;
        DataType fromType = fromDataPort.getType();
        DataType toType = toDataPort.getType();
        if (fromDataPort.getNode() == this) {
            if (!(toType == null || toType.equals(WSConstants.XSD_ANY_TYPE))) {
                fromDataPort.copyType(toDataPort);
            }
        } else if (toDataPort.getNode() == this) {
            if (!(fromType == null || fromType.equals(WSConstants.XSD_ANY_TYPE))) {
                toDataPort.copyType(fromDataPort);
            }
        } else {
            throw new WorkflowRuntimeException();
        }
    }
}

Example 15 with DataType

use of org.apache.airavata.model.application.io.DataType in project airavata by apache.

the class EndForEachNode method portTypeChanged.

/**
 * @see org.apache.airavata.workflow.model.graph.system.SystemNode#portTypeChanged(org.apache.airavata.workflow.model.graph.system.SystemDataPort)
 */
@Override
protected void portTypeChanged(SystemDataPort port) throws GraphException {
    super.portTypeChanged(port);
    List<DataPort> inputPorts = getInputPorts();
    List<DataPort> outputPorts = getOutputPorts();
    Kind kind = port.getKind();
    int index;
    if (kind == Kind.DATA_IN) {
        index = inputPorts.indexOf(port);
    } else if (kind == Kind.DATA_OUT) {
        index = outputPorts.indexOf(port);
    } else {
        throw new WorkflowRuntimeException();
    }
    SystemDataPort inputPort = (SystemDataPort) inputPorts.get(index);
    SystemDataPort outputPort = (SystemDataPort) outputPorts.get(index);
    DataType inputType = inputPort.getType();
    DataType outputType = outputPort.getType();
    DataType portType = port.getType();
    if (portType == null || portType.equals(WSConstants.XSD_ANY_TYPE)) {
        // Do nothing
        return;
    }
    if (port == inputPort) {
        // input -> output
        if (outputType.equals(WSConstants.XSD_ANY_TYPE)) {
            outputPort.copyType(port, 1);
        } else if (outputType.equals(portType)) {
        // Do nothing.
        } else {
        // XXX cannot parse array from WSDL.
        // String message = "The type of input " + index + " ("
        // + inputType + ") of " + getID()
        // + " must be same as the type of output " + index + " ("
        // + outputType + ").";
        // throw new GraphException(message);
        }
    } else if (port == outputPort) {
        // output -> input1
        if (inputType.equals(WSConstants.XSD_ANY_TYPE)) {
            inputPort.copyType(port, -1);
        } else if (inputType.equals(portType)) {
        // Do nothing.
        } else {
        // XXX cannot parse array from WSDL.
        // String message = "The type of input " + index + " ("
        // + inputType + ") of " + getID()
        // + " must be same as the type of output " + index + " ("
        // + outputType + ").";
        // throw new GraphException(message);
        }
    } else {
        throw new WorkflowRuntimeException();
    }
}