Examples with Project org.apache.airavata.model.workspace.Project used on opensource projects

Example 16 with Project

use of org.apache.airavata.model.workspace.Project in project airavata by apache.

the class RegistryServerHandler method getUserProjects.

/**
 * Get All User Projects
 * Get all Project for the user with pagination. Results will be ordered based on creation time DESC.
 *
 * @param gatewayId The identifier for the requested gateway.
 * @param userName  The identifier of the user.
 * @param limit     The amount results to be fetched.
 * @param offset    The starting point of the results to be fetched.
 */
@Override
public List<Project> getUserProjects(String gatewayId, String userName, int limit, int offset) throws RegistryServiceException, TException {
    if (!validateString(userName)) {
        logger.error("Username cannot be empty. Please provide a valid user..");
        RegistryServiceException exception = new RegistryServiceException();
        exception.setMessage("Username cannot be empty. Please provide a valid user..");
        throw exception;
    }
    if (!isGatewayExistInternal(gatewayId)) {
        logger.error("Gateway does not exist.Please provide a valid gateway id...");
        throw new RegistryServiceException("Gateway does not exist.Please provide a valid gateway id...");
    }
    List<Project> projects = new ArrayList<Project>();
    try {
        if (!ExpCatResourceUtils.isUserExist(userName, gatewayId)) {
            logger.warn("User does not exist in the system. Please provide a valid user..");
            return projects;
        }
        experimentCatalog = RegistryFactory.getExperimentCatalog(gatewayId);
        Map<String, String> filters = new HashMap<String, String>();
        filters.put(Constants.FieldConstants.ProjectConstants.OWNER, userName);
        filters.put(Constants.FieldConstants.ProjectConstants.GATEWAY_ID, gatewayId);
        List<Object> list = experimentCatalog.search(ExperimentCatalogModelType.PROJECT, filters, limit, offset, Constants.FieldConstants.ProjectConstants.CREATION_TIME, ResultOrderType.DESC);
        if (list != null && !list.isEmpty()) {
            for (Object o : list) {
                projects.add((Project) o);
            }
        }
        logger.debug("Airavata retrieved projects for user : " + userName + " and gateway id : " + gatewayId);
        return projects;
    } catch (RegistryException e) {
        logger.error("Error while retrieving projects", e);
        RegistryServiceException exception = new RegistryServiceException();
        exception.setMessage("Error while retrieving projects. More info : " + e.getMessage());
        throw exception;
    }
}

Example 17 with Project

use of org.apache.airavata.model.workspace.Project in project airavata by apache.

the class RegistryServerHandler method searchProjects.

/**
 * Search User Projects
 * Search and get all Projects for user by project description or/and project name  with pagination.
 * Results will be ordered based on creation time DESC.
 *
 * @param gatewayId The unique identifier of the gateway making the request.
 * @param userName  The identifier of the user.
 * @param filters   Map of multiple filter criteria. Currenlt search filters includes Project Name and Project Description
 * @param limit     The amount results to be fetched.
 * @param offset    The starting point of the results to be fetched.
 */
@Override
public List<Project> searchProjects(String gatewayId, String userName, List<String> accessibleProjIds, Map<ProjectSearchFields, String> filters, int limit, int offset) throws RegistryServiceException, TException {
    if (!validateString(userName)) {
        logger.error("Username cannot be empty. Please provide a valid user..");
        AiravataSystemException exception = new AiravataSystemException();
        exception.setAiravataErrorType(AiravataErrorType.INTERNAL_ERROR);
        exception.setMessage("Username cannot be empty. Please provide a valid user..");
        throw exception;
    }
    if (!isGatewayExistInternal(gatewayId)) {
        logger.error("Gateway does not exist.Please provide a valid gateway id...");
        throw new AiravataSystemException(AiravataErrorType.INTERNAL_ERROR);
    }
    try {
        if (!ExpCatResourceUtils.isUserExist(userName, gatewayId)) {
            logger.error("User does not exist in the system. Please provide a valid user..");
            AiravataSystemException exception = new AiravataSystemException();
            exception.setAiravataErrorType(AiravataErrorType.INTERNAL_ERROR);
            exception.setMessage("User does not exist in the system. Please provide a valid user..");
            throw exception;
        }
        List<Project> projects = new ArrayList<Project>();
        experimentCatalog = RegistryFactory.getExperimentCatalog(gatewayId);
        Map<String, String> regFilters = new HashMap<String, String>();
        regFilters.put(Constants.FieldConstants.ProjectConstants.GATEWAY_ID, gatewayId);
        for (Map.Entry<ProjectSearchFields, String> entry : filters.entrySet()) {
            if (entry.getKey().equals(ProjectSearchFields.PROJECT_NAME)) {
                regFilters.put(Constants.FieldConstants.ProjectConstants.PROJECT_NAME, entry.getValue());
            } else if (entry.getKey().equals(ProjectSearchFields.PROJECT_DESCRIPTION)) {
                regFilters.put(Constants.FieldConstants.ProjectConstants.DESCRIPTION, entry.getValue());
            }
        }
        if (accessibleProjIds.size() == 0 && !ServerSettings.isEnableSharing()) {
            if (!regFilters.containsKey(AbstractExpCatResource.ProjectConstants.USERNAME)) {
                regFilters.put(AbstractExpCatResource.ProjectConstants.USERNAME, userName);
            }
        }
        List<Object> results = experimentCatalog.searchAllAccessible(ExperimentCatalogModelType.PROJECT, accessibleProjIds, regFilters, limit, offset, Constants.FieldConstants.ProjectConstants.CREATION_TIME, ResultOrderType.DESC);
        for (Object object : results) {
            projects.add((Project) object);
        }
        logger.debug("Airavata retrieved projects for user : " + userName + " and gateway id : " + gatewayId);
        return projects;
    } catch (Exception e) {
        logger.error("Error while retrieving projects", e);
        RegistryServiceException exception = new RegistryServiceException();
        exception.setMessage("Error while retrieving projects. More info : " + e.getMessage());
        throw exception;
    }
}

Example 18 with Project

use of org.apache.airavata.model.workspace.Project in project airavata by apache.

the class CreateLaunchExperiment method createExperimentForStampedeAmber.

public static String createExperimentForStampedeAmber(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = client.getApplicationInputs(new AuthzToken(""), amberAppId);
        // }
        for (InputDataObjectType inputDataObjectType : exInputs) {
            if (inputDataObjectType.getName().equalsIgnoreCase("Heat_Restart_File")) {
                inputDataObjectType.setValue("file://ogce@stampede.xsede.org:/scratch/01437/ogce/gta-work-dirs/PROCESS_e0610a6c-5778-4a69-a004-f440e29194af/02_Heat.rst");
            } else if (inputDataObjectType.getName().equalsIgnoreCase("Production_Control_File")) {
                inputDataObjectType.setValue("file://ogce@stampede.xsede.org:/scratch/01437/ogce/gta-work-dirs/PROCESS_e0610a6c-5778-4a69-a004-f440e29194af/03_Prod.in");
            } else if (inputDataObjectType.getName().equalsIgnoreCase("Parameter_Topology_File")) {
                inputDataObjectType.setValue("file://ogce@stampede.xsede.org:/scratch/01437/ogce/gta-work-dirs/PROCESS_e0610a6c-5778-4a69-a004-f440e29194af/prmtop");
            }
        }
        List<OutputDataObjectType> exOut = client.getApplicationOutputs(new AuthzToken(""), amberAppId);
        Project project = ProjectModelUtil.createProject("default", "admin", "test project");
        String projectId = client.createProject(new AuthzToken(""), DEFAULT_GATEWAY, project);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, projectId, "admin", "sshEchoExperiment", "SimpleEchoBR", amberAppId, exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(new AuthzToken(""), amberAppId);
        if (computeResources != null && computeResources.size() != 0) {
            for (String id : computeResources.keySet()) {
                String resourceName = computeResources.get(id);
                if (resourceName.equals(stampedeHostName)) {
                    ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 4, 1, 1, "normal", 20, 1);
                    UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
                    userConfigurationData.setAiravataAutoSchedule(false);
                    userConfigurationData.setOverrideManualScheduledParams(false);
                    userConfigurationData.setComputationalResourceScheduling(scheduling);
                    simpleExperiment.setUserConfigurationData(userConfigurationData);
                    return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
                }
            }
        }
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
    return null;
}

Example 19 with Project

use of org.apache.airavata.model.workspace.Project in project airavata by apache.

the class CreateLaunchExperimentUS3 method createUS3ExperimentForStampede.

public static String createUS3ExperimentForStampede(Airavata.Client client) throws AiravataSystemException, InvalidRequestException, AiravataClientException, TException {
    try {
        List<InputDataObjectType> exInputs = new ArrayList<InputDataObjectType>();
        InputDataObjectType input = new InputDataObjectType();
        input.setName("input");
        input.setType(DataType.URI);
        input.setValue("file:///home/sgg/chathuri/laptop_backup/airavata/ultrascan_input/hpcinput.tar");
        InputDataObjectType input1 = new InputDataObjectType();
        input1.setName("walltime");
        input1.setType(DataType.STRING);
        input1.setValue("-walltime=60");
        InputDataObjectType input2 = new InputDataObjectType();
        input2.setName("mgroupcount");
        input2.setType(DataType.STRING);
        input2.setValue("-mgroupcount=1");
        exInputs.add(input);
        exInputs.add(input1);
        exInputs.add(input2);
        List<OutputDataObjectType> exOut = new ArrayList<OutputDataObjectType>();
        OutputDataObjectType output = new OutputDataObjectType();
        output.setName("output");
        output.setType(DataType.URI);
        output.setValue("");
        // OutputDataObjectType output1 = new OutputDataObjectType();
        // output1.setName("stdout");
        // output1.setType(DataType.STDOUT);
        // output1.setValue("");
        // OutputDataObjectType output2 = new OutputDataObjectType();
        // output2.setName("stderr");
        // output2.setType(DataType.STDERR);
        // output2.setValue("");
        exOut.add(output);
        // exOut.add(output1);
        // exOut.add(output2);
        Project project = ProjectModelUtil.createProject("project1", "admin", "test project");
        String projectId = client.createProject(new AuthzToken(""), DEFAULT_GATEWAY, project);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, projectId, "ultrascan", "US3ExperimentStampede", "US3AppStampede", "ultrascan_7ce6cd43-622c-44e0-87c5-fb7a6528c799", exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling("stampede.tacc.xsede.org_e59e046f-e0e1-49c4-8475-2fab2e35d044", 32, 2, 0, "normal", 30, 0);
        scheduling.setResourceHostId("stampede.tacc.xsede.org_e59e046f-e0e1-49c4-8475-2fab2e35d044");
        UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
        userConfigurationData.setAiravataAutoSchedule(false);
        userConfigurationData.setOverrideManualScheduledParams(false);
        userConfigurationData.setComputationalResourceScheduling(scheduling);
        /*            AdvancedOutputDataHandling dataHandling = new AdvancedOutputDataHandling();
            dataHandling.setOutputDataDir("/home/sgg/chathuri/laptop_backup/airavata");
            userConfigurationData.setAdvanceOutputDataHandling(dataHandling);*/
        simpleExperiment.setUserConfigurationData(userConfigurationData);
        return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
}

Example 20 with Project

use of org.apache.airavata.model.workspace.Project in project airavata by apache.

the class CreateLaunchExperimentUS3 method createExperimentForTrestles.

// public static void addDescriptors() throws AiravataAPIInvocationException,ApplicationSettingsException  {
// try {
// UltrascanDocumentCreator documentCreator = new UltrascanDocumentCreator(getAiravataAPI());
// documentCreator.createMPIPBSDocsTrestles();
// documentCreator.createEchoPBSDocsforTestles();
// documentCreator.createEchoSlurmDocsofStampede();
// documentCreator.createMPISLURMDocsStampede();
// } catch (AiravataAPIInvocationException e) {
// logger.error("Unable to create airavata API", e.getMessage());
// throw new AiravataAPIInvocationException(e);
// } catch (ApplicationSettingsException e) {
// logger.error("Unable to create airavata API", e.getMessage());
// throw new ApplicationSettingsException(e.getMessage());
// }
// }
// private static AiravataAPI getAiravataAPI() throws AiravataAPIInvocationException, ApplicationSettingsException {
// AiravataAPI airavataAPI;
// try {
// String sysUser = ClientSettings.getSetting(DEFAULT_USER);
// String gateway = ClientSettings.getSetting(DEFAULT_GATEWAY);
// airavataAPI = AiravataAPIFactory.getAPI(gateway, sysUser);
// } catch (AiravataAPIInvocationException e) {
// logger.error("Unable to create airavata API", e.getMessage());
// throw new AiravataAPIInvocationException(e);
// } catch (ApplicationSettingsException e) {
// logger.error("Unable to create airavata API", e.getMessage());
// throw new ApplicationSettingsException(e.getMessage());
// }
// return airavataAPI;
// }
public static String createExperimentForTrestles(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = new ArrayList<InputDataObjectType>();
        InputDataObjectType input = new InputDataObjectType();
        input.setName("echo_input");
        input.setType(DataType.STRING);
        input.setValue("echo_output=Hello World");
        exInputs.add(input);
        List<OutputDataObjectType> exOut = new ArrayList<OutputDataObjectType>();
        OutputDataObjectType output = new OutputDataObjectType();
        output.setName("echo_output");
        output.setType(DataType.STRING);
        output.setValue("");
        exOut.add(output);
        Project project = ProjectModelUtil.createProject("project1", "admin", "test project");
        String projectId = client.createProject(new AuthzToken(""), DEFAULT_GATEWAY, project);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, projectId, "admin", "US3EchoExperimentTrestles", "US3EchoTrestles", "US3EchoTrestles", exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling("trestles.sdsc.edu", 1, 1, 1, "shared", 0, 0);
        scheduling.setResourceHostId("gsissh-trestles");
        UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
        userConfigurationData.setAiravataAutoSchedule(false);
        userConfigurationData.setOverrideManualScheduledParams(false);
        userConfigurationData.setComputationalResourceScheduling(scheduling);
        simpleExperiment.setUserConfigurationData(userConfigurationData);
        return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
}