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Example 26 with Project

use of org.apache.airavata.model.workspace.Project in project airavata by apache.

the class CreateLaunchExperiment method createExperimentEchoForLocalHost.

public static String createExperimentEchoForLocalHost(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = client.getApplicationInputs(new AuthzToken(""), echoAppId);
        for (InputDataObjectType inputDataObjectType : exInputs) {
            if (inputDataObjectType.getName().equalsIgnoreCase("Input_to_Echo")) {
                inputDataObjectType.setValue("Hello World");
            }
        }
        List<OutputDataObjectType> exOut = client.getApplicationOutputs(new AuthzToken(""), echoAppId);
        Project project = ProjectModelUtil.createProject("project1", "admin", "test project");
        String projectId = client.createProject(new AuthzToken(""), DEFAULT_GATEWAY, project);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, projectId, "admin", "echoExperiment", "Echo Test", echoAppId, exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(new AuthzToken(""), echoAppId);
        if (computeResources != null && computeResources.size() != 0) {
            for (String id : computeResources.keySet()) {
                String resourceName = computeResources.get(id);
                if (resourceName.equals(localHost)) {
                    ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 1, 1, 1, "normal", 30, 1);
                    UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
                    userConfigurationData.setAiravataAutoSchedule(false);
                    userConfigurationData.setOverrideManualScheduledParams(false);
                    userConfigurationData.setComputationalResourceScheduling(scheduling);
                    simpleExperiment.setUserConfigurationData(userConfigurationData);
                    return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
                }
            }
        }
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
    return null;
}
Also used : TException(org.apache.thrift.TException) InputDataObjectType(org.apache.airavata.model.application.io.InputDataObjectType) ExperimentModel(org.apache.airavata.model.experiment.ExperimentModel) Project(org.apache.airavata.model.workspace.Project) OutputDataObjectType(org.apache.airavata.model.application.io.OutputDataObjectType) UserConfigurationDataModel(org.apache.airavata.model.experiment.UserConfigurationDataModel) AuthzToken(org.apache.airavata.model.security.AuthzToken) ComputationalResourceSchedulingModel(org.apache.airavata.model.scheduling.ComputationalResourceSchedulingModel)

Example 27 with Project

use of org.apache.airavata.model.workspace.Project in project airavata by apache.

the class CreateLaunchExperiment method createExperimentForBR2.

// public static String createEchoExperimentForLonestar(Airavata.Client client) throws TException {
// try {
// List<OutputDataObjectType> exInputs = new ArrayList<OutputDataObjectType>();
// OutputDataObjectType input = new OutputDataObjectType();
// input.setName("echo_input");
// input.setType(DataType.STRING);
// input.setValue("Echoed_Output=Hello World");
// exInputs.add(input);
// 
// List<OutputDataObjectType> exOut = new ArrayList<OutputDataObjectType>();
// OutputDataObjectType output = new OutputDataObjectType();
// output.setName("Echoed_Output");
// output.setType(DataType.STRING);
// output.setValue("");
// exOut.add(output);
// 
// Project project = ProjectModelUtil.createProject("default", "admin", "test project");
// String projectId = client.createProject(project);
// 
// ExperimentModel simpleExperiment =
// ExperimentModelUtil.createSimpleExperiment(projectId, "admin", "echoExperiment", "SimpleEcho4", echoAppId, exInputs);
// simpleExperiment.setExperimentOutputs(exOut);
// 
// Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(echoAppId);
// if (computeResources != null && computeResources.size() != 0){
// for (String id : computeResources.keySet()){
// String resourceName = computeResources.get(id);
// if (resourceName.equals(stampedeHostName)){
// ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 1, 1, 1, "normal", 1, 0, 1, "TG-STA110014S");
// UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
// userConfigurationData.setAiravataAutoSchedule(false);
// userConfigurationData.setOverrideManualScheduledParams(false);
// userConfigurationData.setComputationalResourceScheduling(scheduling);
// simpleExperiment.setUserConfigurationData(userConfigurationData);
// return client.createExperiment(simpleExperiment);
// }
// }
// }
// ComputationalResourceSchedulingModel scheduling =
// ExperimentModelUtil.createComputationResourceScheduling(sgeAppId.split(",")[0], 1, 1, 1, "normal", 1, 0, 1, "TG-STA110014S");
// UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
// userConfigurationData.setAiravataAutoSchedule(false);
// userConfigurationData.setOverrideManualScheduledParams(false);
// userConfigurationData.setComputationalResourceScheduling(scheduling);
// simpleExperiment.setUserConfigurationData(userConfigurationData);
// return client.createExperiment(simpleExperiment);
// } catch (AiravataSystemException e) {
// logger.error("Error occured while creating the experiment...", e.getMessage());
// throw new AiravataSystemException(e);
// } catch (InvalidRequestException e) {
// logger.error("Error occured while creating the experiment...", e.getMessage());
// throw new InvalidRequestException(e);
// } catch (AiravataClientException e) {
// logger.error("Error occured while creating the experiment...", e.getMessage());
// throw new AiravataClientException(e);
// } catch (LaunchValidationException e) {
// logger.error("Validation failed" + e.getErrorMessage());
// org.apache.airavata.model.error.ValidationResults validationResult = e.getValidationResult();
// for (org.apache.airavata.model.error.ValidatorResult vResult : validationResult.getValidationResultList()) {
// if (!vResult.isSetResult()) {
// System.out.println("Error:" + vResult.getErrorDetails());
// }
// }
// throw e;
// } catch (TException e) {
// logger.error("Error occured while creating the experiment...", e.getMessage());
// throw new TException(e);
// }
// }
public static String createExperimentForBR2(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = client.getApplicationInputs(new AuthzToken(""), echoAppId);
        for (InputDataObjectType inputDataObjectType : exInputs) {
            if (inputDataObjectType.getName().equalsIgnoreCase("Input_to_Echo")) {
                inputDataObjectType.setValue("Hello World");
            }
        }
        List<OutputDataObjectType> exOut = client.getApplicationOutputs(new AuthzToken(""), echoAppId);
        Project project = ProjectModelUtil.createProject("default", "lahiru", "test project");
        String projectId = client.createProject(new AuthzToken(""), DEFAULT_GATEWAY, project);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, projectId, "lahiru", "sshEchoExperiment", "SimpleEchoBR", echoAppId, exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(new AuthzToken(""), echoAppId);
        if (computeResources != null && computeResources.size() != 0) {
            for (String id : computeResources.keySet()) {
                String resourceName = computeResources.get(id);
                if (resourceName.equals(br2HostName)) {
                    ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 1, 1, 1, "normal", 30, 1);
                    UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
                    userConfigurationData.setAiravataAutoSchedule(false);
                    userConfigurationData.setOverrideManualScheduledParams(false);
                    userConfigurationData.setComputationalResourceScheduling(scheduling);
                    simpleExperiment.setUserConfigurationData(userConfigurationData);
                    return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
                }
            }
        }
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
    return null;
}
Also used : TException(org.apache.thrift.TException) InputDataObjectType(org.apache.airavata.model.application.io.InputDataObjectType) ExperimentModel(org.apache.airavata.model.experiment.ExperimentModel) Project(org.apache.airavata.model.workspace.Project) OutputDataObjectType(org.apache.airavata.model.application.io.OutputDataObjectType) UserConfigurationDataModel(org.apache.airavata.model.experiment.UserConfigurationDataModel) AuthzToken(org.apache.airavata.model.security.AuthzToken) ComputationalResourceSchedulingModel(org.apache.airavata.model.scheduling.ComputationalResourceSchedulingModel)

Example 28 with Project

use of org.apache.airavata.model.workspace.Project in project airavata by apache.

the class CreateLaunchExperiment method createExperimentForTrestlesAmber.

public static String createExperimentForTrestlesAmber(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = client.getApplicationInputs(new AuthzToken(""), amberAppId);
        // }
        for (InputDataObjectType inputDataObjectType : exInputs) {
            if (inputDataObjectType.getName().equalsIgnoreCase("Heat_Restart_File")) {
                inputDataObjectType.setValue("/Users/chathuri/dev/airavata/source/php/inputs/AMBER_FILES/02_Heat.rst");
            } else if (inputDataObjectType.getName().equalsIgnoreCase("Production_Control_File")) {
                inputDataObjectType.setValue("/Users/chathuri/dev/airavata/source/php/inputs/AMBER_FILES/03_Prod.in");
            } else if (inputDataObjectType.getName().equalsIgnoreCase("Parameter_Topology_File")) {
                inputDataObjectType.setValue("/Users/chathuri/dev/airavata/source/php/inputs/AMBER_FILES/prmtop");
            }
        }
        List<OutputDataObjectType> exOut = client.getApplicationOutputs(new AuthzToken(""), amberAppId);
        Project project = ProjectModelUtil.createProject("default", "admin", "test project");
        String projectId = client.createProject(new AuthzToken(""), DEFAULT_GATEWAY, project);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, projectId, "admin", "sshEchoExperiment", "SimpleEchoBR", amberAppId, exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        simpleExperiment.setEnableEmailNotification(true);
        // simpleExperiment.addToEmailAddresses("raman@ogce.org");
        Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(new AuthzToken(""), amberAppId);
        if (computeResources != null && computeResources.size() != 0) {
            for (String id : computeResources.keySet()) {
                String resourceName = computeResources.get(id);
                if (resourceName.equals(trestlesHostName)) {
                    ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 4, 1, 1, "normal", 20, 1);
                    UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
                    userConfigurationData.setAiravataAutoSchedule(false);
                    userConfigurationData.setOverrideManualScheduledParams(false);
                    userConfigurationData.setComputationalResourceScheduling(scheduling);
                    simpleExperiment.setUserConfigurationData(userConfigurationData);
                    return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
                }
            }
        }
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
    return null;
}
Also used : TException(org.apache.thrift.TException) InputDataObjectType(org.apache.airavata.model.application.io.InputDataObjectType) ExperimentModel(org.apache.airavata.model.experiment.ExperimentModel) Project(org.apache.airavata.model.workspace.Project) OutputDataObjectType(org.apache.airavata.model.application.io.OutputDataObjectType) UserConfigurationDataModel(org.apache.airavata.model.experiment.UserConfigurationDataModel) AuthzToken(org.apache.airavata.model.security.AuthzToken) ComputationalResourceSchedulingModel(org.apache.airavata.model.scheduling.ComputationalResourceSchedulingModel)

Example 29 with Project

use of org.apache.airavata.model.workspace.Project in project airavata by apache.

the class CreateLaunchExperiment method createExperimentForLSF.

public static String createExperimentForLSF(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = client.getApplicationInputs(new AuthzToken(""), echoAppId);
        for (InputDataObjectType inputDataObjectType : exInputs) {
            inputDataObjectType.setValue("Hello World");
        }
        List<OutputDataObjectType> exOut = client.getApplicationOutputs(new AuthzToken(""), echoAppId);
        Project project = ProjectModelUtil.createProject("default", "lg11w", "test project");
        String projectId = client.createProject(new AuthzToken(""), DEFAULT_GATEWAY, project);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, projectId, "lg11w", "sshEchoExperiment", "StressMem", echoAppId, exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        simpleExperiment.setExperimentInputs(exInputs);
        Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(new AuthzToken(""), echoAppId);
        if (computeResources != null && computeResources.size() != 0) {
            for (String id : computeResources.keySet()) {
                String resourceName = computeResources.get(id);
                if (resourceName.equals(umassrcHostName)) {
                    ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 10, 1, 1, "long", 60, 1000);
                    UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
                    userConfigurationData.setAiravataAutoSchedule(false);
                    userConfigurationData.setOverrideManualScheduledParams(false);
                    userConfigurationData.setComputationalResourceScheduling(scheduling);
                    simpleExperiment.setUserConfigurationData(userConfigurationData);
                    simpleExperiment.setEmailAddresses(Arrays.asList(new String[] { "test@umassmed.edu" }));
                    return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
                }
            }
        }
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
    return null;
}
Also used : TException(org.apache.thrift.TException) InputDataObjectType(org.apache.airavata.model.application.io.InputDataObjectType) ExperimentModel(org.apache.airavata.model.experiment.ExperimentModel) Project(org.apache.airavata.model.workspace.Project) OutputDataObjectType(org.apache.airavata.model.application.io.OutputDataObjectType) UserConfigurationDataModel(org.apache.airavata.model.experiment.UserConfigurationDataModel) AuthzToken(org.apache.airavata.model.security.AuthzToken) ComputationalResourceSchedulingModel(org.apache.airavata.model.scheduling.ComputationalResourceSchedulingModel)

Example 30 with Project

use of org.apache.airavata.model.workspace.Project in project airavata by apache.

the class CreateLaunchExperiment method createExperimentForBR2Amber.

public static String createExperimentForBR2Amber(Airavata.Client client) throws TException {
    try {
        List<InputDataObjectType> exInputs = client.getApplicationInputs(new AuthzToken(""), amberAppId);
        // }
        for (InputDataObjectType inputDataObjectType : exInputs) {
            if (inputDataObjectType.getName().equalsIgnoreCase("Heat_Restart_File")) {
                inputDataObjectType.setValue("file://root@test-drive.airavata.org:/var/www/experimentData/admin101a290e6330f15a91349159553ae8b6bb1/02_Heat.rst");
            } else if (inputDataObjectType.getName().equalsIgnoreCase("Production_Control_File")) {
                inputDataObjectType.setValue("file://root@test-drive.airavata.org:/var/www/experimentData/admin101a290e6330f15a91349159553ae8b6bb1/03_Prod.in");
            } else if (inputDataObjectType.getName().equalsIgnoreCase("Parameter_Topology_File")) {
                inputDataObjectType.setValue("file://root@test-drive.airavata.org:/var/www/experimentData/admin101a290e6330f15a91349159553ae8b6bb1/prmtop");
            }
        }
        List<OutputDataObjectType> exOut = client.getApplicationOutputs(new AuthzToken(""), amberAppId);
        Project project = ProjectModelUtil.createProject("default", "admin", "test project");
        String projectId = client.createProject(new AuthzToken(""), DEFAULT_GATEWAY, project);
        ExperimentModel simpleExperiment = ExperimentModelUtil.createSimpleExperiment(DEFAULT_GATEWAY, projectId, "admin", "sshEchoExperiment", "SimpleEchoBR", amberAppId, exInputs);
        simpleExperiment.setExperimentOutputs(exOut);
        Map<String, String> computeResources = airavataClient.getAvailableAppInterfaceComputeResources(new AuthzToken(""), amberAppId);
        if (computeResources != null && computeResources.size() != 0) {
            for (String id : computeResources.keySet()) {
                String resourceName = computeResources.get(id);
                if (resourceName.equals(br2HostName)) {
                    ComputationalResourceSchedulingModel scheduling = ExperimentModelUtil.createComputationResourceScheduling(id, 4, 1, 1, "cpu", 20, 1);
                    UserConfigurationDataModel userConfigurationData = new UserConfigurationDataModel();
                    userConfigurationData.setAiravataAutoSchedule(false);
                    userConfigurationData.setOverrideManualScheduledParams(false);
                    userConfigurationData.setComputationalResourceScheduling(scheduling);
                    simpleExperiment.setUserConfigurationData(userConfigurationData);
                    return client.createExperiment(new AuthzToken(""), DEFAULT_GATEWAY, simpleExperiment);
                }
            }
        }
    } catch (AiravataSystemException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataSystemException(e);
    } catch (InvalidRequestException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new InvalidRequestException(e);
    } catch (AiravataClientException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new AiravataClientException(e);
    } catch (TException e) {
        logger.error("Error occured while creating the experiment...", e.getMessage());
        throw new TException(e);
    }
    return null;
}
Also used : TException(org.apache.thrift.TException) InputDataObjectType(org.apache.airavata.model.application.io.InputDataObjectType) ExperimentModel(org.apache.airavata.model.experiment.ExperimentModel) Project(org.apache.airavata.model.workspace.Project) OutputDataObjectType(org.apache.airavata.model.application.io.OutputDataObjectType) UserConfigurationDataModel(org.apache.airavata.model.experiment.UserConfigurationDataModel) AuthzToken(org.apache.airavata.model.security.AuthzToken) ComputationalResourceSchedulingModel(org.apache.airavata.model.scheduling.ComputationalResourceSchedulingModel)

Aggregations

Project (org.apache.airavata.model.workspace.Project)32 TException (org.apache.thrift.TException)20 InputDataObjectType (org.apache.airavata.model.application.io.InputDataObjectType)17 ExperimentModel (org.apache.airavata.model.experiment.ExperimentModel)17 UserConfigurationDataModel (org.apache.airavata.model.experiment.UserConfigurationDataModel)17 ComputationalResourceSchedulingModel (org.apache.airavata.model.scheduling.ComputationalResourceSchedulingModel)17 OutputDataObjectType (org.apache.airavata.model.application.io.OutputDataObjectType)16 AuthzToken (org.apache.airavata.model.security.AuthzToken)13 ArrayList (java.util.ArrayList)9 RegistryServiceException (org.apache.airavata.registry.api.exception.RegistryServiceException)8 ApplicationSettingsException (org.apache.airavata.common.exception.ApplicationSettingsException)6 AiravataClientException (org.apache.airavata.model.error.AiravataClientException)6 AiravataSystemException (org.apache.airavata.model.error.AiravataSystemException)6 InvalidRequestException (org.apache.airavata.model.error.InvalidRequestException)6 AiravataException (org.apache.airavata.common.exception.AiravataException)5 CredentialStoreException (org.apache.airavata.credential.store.exception.CredentialStoreException)5 RegistryService (org.apache.airavata.registry.api.RegistryService)4 SecurityCheck (org.apache.airavata.service.security.interceptor.SecurityCheck)4 SharingRegistryService (org.apache.airavata.sharing.registry.service.cpi.SharingRegistryService)4 DocumentCreatorNew (org.apache.airavata.integration.tools.DocumentCreatorNew)3