Examples with RegistryException org.apache.airavata.registry.cpi.RegistryException used on opensource projects

Example 86 with RegistryException

use of org.apache.airavata.registry.cpi.RegistryException in project airavata by apache.

the class ExperimentRegistry method addTaskStatus.

public String addTaskStatus(TaskStatus taskStatus, String taskID) throws RegistryException {
    try {
        TaskResource taskResource = new TaskResource();
        taskResource.setTaskId(taskID);
        TaskStatusResource status = taskResource.getTaskStatus();
        TaskState newState = taskStatus.getState();
        if (status == null) {
            status = (TaskStatusResource) taskResource.create(ResourceType.TASK_STATUS);
            status.setStatusId(getStatusID("TASK_STATE"));
        } else {
            String state = status.getState();
            if (newState != null && !state.equals(newState.toString())) {
                status.setStatusId(getStatusID("TASK_STATE"));
            }
        }
        status.setTaskId(taskID);
        status.setTimeOfStateChange(AiravataUtils.getTime(taskStatus.getTimeOfStateChange()));
        if (newState != null) {
            status.setState(newState.toString());
        }
        status.setReason(taskStatus.getReason());
        status.save();
        logger.debug(taskID, "Added task {} status to {}.", taskID, taskStatus.toString());
    } catch (Exception e) {
        logger.error(taskID, "Error while adding task status...", e);
        throw new RegistryException(e);
    }
    return taskID;
}

Example 87 with RegistryException

use of org.apache.airavata.registry.cpi.RegistryException in project airavata by apache.

the class ExperimentRegistry method updateProcess.

public void updateProcess(ProcessModel process, String processId) throws RegistryException {
    try {
        ExperimentResource experimentResource = new ExperimentResource();
        ProcessResource processResource = experimentResource.getProcess(processId);
        processResource.setProcessId(process.getProcessId());
        processResource.setExperimentId(process.getExperimentId());
        processResource.setCreationTime(AiravataUtils.getTime(process.getCreationTime()));
        processResource.setLastUpdateTime(AiravataUtils.getTime(process.getLastUpdateTime()));
        processResource.setProcessDetail(process.getProcessDetail());
        processResource.setApplicationInterfaceId(process.getApplicationInterfaceId());
        processResource.setTaskDag(process.getTaskDag());
        processResource.setGatewayExecutionId(process.getGatewayExecutionId());
        processResource.setComputeResourceId(process.getComputeResourceId());
        processResource.setApplicationDeploymentId(process.getApplicationDeploymentId());
        processResource.setStorageResourceId(process.getStorageResourceId());
        processResource.setUserDn(process.getUserDn());
        processResource.setGenerateCert(process.isGenerateCert());
        processResource.setExperimentDataDir(process.getExperimentDataDir());
        processResource.setUserName(process.getUserName());
        processResource.setUseUserCRPref(process.isUseUserCRPref());
        if (process.isEnableEmailNotification()) {
            processResource.setEnableEmailNotification(true);
            if (process.getEmailAddresses() != null) {
                processResource.setEmailAddresses(StringUtils.join(process.getEmailAddresses(), ","));
            }
        } else {
            processResource.setEnableEmailNotification(false);
        }
        processResource.save();
        if (process.getProcessResourceSchedule() != null) {
            updateProcessResourceSchedule(process.getProcessResourceSchedule(), process.getProcessId());
        }
        if (process.getProcessInputs() != null && process.getProcessInputs().size() > 0) {
            updateProcessInputs(process.getProcessInputs(), process.getProcessId());
        }
        if (process.getProcessOutputs() != null && process.getProcessOutputs().size() > 0) {
            updateProcessOutputs(process.getProcessOutputs(), process.getProcessId());
        }
        if (process.getProcessStatuses() != null) {
            updateProcessStatus(process.getProcessStatuses().get(0), process.getProcessId());
        }
        if (process.getProcessErrors() != null) {
            updateProcessError(process.getProcessErrors().get(0), process.getProcessId());
        }
        if (process.getTasks() != null && process.getTasks().size() > 0) {
            for (TaskModel task : process.getTasks()) {
                updateTask(task, task.getTaskId());
            }
        }
    } catch (Exception e) {
        logger.error("Error while updating process...", e);
        throw new RegistryException(e);
    }
}

Example 88 with RegistryException

use of org.apache.airavata.registry.cpi.RegistryException in project airavata by apache.

the class ExperimentRegistry method updateTask.

public String updateTask(TaskModel task, String taskID) throws RegistryException {
    try {
        ProcessResource processResource = new ProcessResource();
        TaskResource taskResource = processResource.getTask(taskID);
        taskResource.setTaskId(task.getTaskId());
        taskResource.setParentProcessId(task.getParentProcessId());
        taskResource.setTaskType(task.getTaskType().toString());
        taskResource.setCreationTime(AiravataUtils.getTime(task.getCreationTime()));
        taskResource.setLastUpdateTime(AiravataUtils.getTime(task.getLastUpdateTime()));
        taskResource.setTaskDetail(task.getTaskDetail());
        taskResource.setSubTaskModel(task.getSubTaskModel());
        taskResource.save();
        if (task.getTaskErrors() != null) {
            updateTaskError(task.getTaskErrors().get(0), task.getTaskId());
        }
        if (task.getTaskErrors() != null) {
            updateTaskError(task.getTaskErrors().get(0), task.getTaskId());
        }
    } catch (Exception e) {
        logger.error(taskID, "Error while adding task...", e);
        throw new RegistryException(e);
    }
    return taskID;
}

Example 89 with RegistryException

use of org.apache.airavata.registry.cpi.RegistryException in project airavata by apache.

the class GatewayRegistry method addGateway.

public String addGateway(Gateway gateway) throws RegistryException {
    try {
        GatewayResource resource = (GatewayResource) ExpCatResourceUtils.createGateway(gateway.getGatewayId());
        resource.setGatewayApprovalStatus(gateway.getGatewayApprovalStatus().toString());
        resource.setGatewayName(gateway.getGatewayName());
        resource.setEmailAddress(gateway.getEmailAddress());
        resource.setDomain(gateway.getDomain());
        resource.setGatewayAcronym(gateway.getGatewayAcronym());
        resource.setGatewayUrl(gateway.getGatewayURL());
        resource.setGatewayPublicAbstract(gateway.getGatewayPublicAbstract());
        resource.setReviewProposalDescription(gateway.getReviewProposalDescription());
        resource.setGatewayAdminFirstName(gateway.getGatewayAdminFirstName());
        resource.setGetGatewayAdminLastName(gateway.getGatewayAdminLastName());
        resource.setGatewayAdminEmail(gateway.getGatewayAdminEmail());
        resource.setIdentityServerUserName(gateway.getIdentityServerUserName());
        resource.setIdentityServerPasswordToken(gateway.getIdentityServerPasswordToken());
        resource.setDeclinedReason(gateway.getDeclinedReason());
        resource.setOauthClientId(gateway.getOauthClientId());
        resource.setOauthClientSecret(gateway.getOauthClientSecret());
        resource.setRequestCreationTime(new Timestamp(System.currentTimeMillis()));
        resource.setRequesterUsername(gateway.getRequesterUsername());
        resource.save();
        return gateway.getGatewayId();
    } catch (RegistryException e) {
        logger.error("Error while saving gateway to registry", e);
        throw new RegistryException(e);
    }
}

Example 90 with RegistryException

use of org.apache.airavata.registry.cpi.RegistryException in project airavata by apache.

the class WorkerResource method searchExperiments.

/**
 * To search the experiments of user with the given time period and filter criteria and retrieve the results with
 * pagination support. Results can be ordered based on an identifier (i.e column) either ASC or
 * DESC. But in the current implementation ordering is only supported based on creationTime. Also if
 * time period values i.e fromTime and toTime are null they will be ignored.
 *
 * @param fromTime
 * @param toTime
 * @param filters
 * @param limit
 * @param offset
 * @param orderByIdentifier
 * @param resultOrderType
 * @return
 * @throws org.apache.airavata.registry.cpi.RegistryException
 */
public List<ExperimentSummaryResource> searchExperiments(List<String> accessibleIds, Timestamp fromTime, Timestamp toTime, Map<String, String> filters, int limit, int offset, Object orderByIdentifier, ResultOrderType resultOrderType) throws RegistryException {
    List<ExperimentSummaryResource> result = new ArrayList();
    EntityManager em = null;
    try {
        Map<String, Object> queryParameters = new HashMap<>();
        String query = "SELECT e FROM ExperimentSummary e " + "WHERE ";
        // FIXME There is a performance bottleneck for using IN clause. Try using temporary tables ?
        if (accessibleIds != null && accessibleIds.size() > 0) {
            query += " e.experimentId IN (";
            int accessibleIdIndex = 0;
            for (String id : accessibleIds) {
                String paramName = "accessibleId" + accessibleIdIndex;
                query += (":" + paramName + ",");
                queryParameters.put(paramName, id);
                accessibleIdIndex++;
            }
            query = query.substring(0, query.length() - 1) + ") AND ";
        } else if (ServerSettings.isEnableSharing() && (accessibleIds == null || accessibleIds.size() == 0)) {
            return new ArrayList<>();
        }
        if (filters.get(ExperimentStatusConstants.STATE) != null) {
            String experimentState = ExperimentState.valueOf(filters.get(ExperimentStatusConstants.STATE)).toString();
            query += "e.state='" + experimentState + "' AND ";
        }
        if (toTime != null && fromTime != null && toTime.after(fromTime)) {
            query += "e.creationTime > :fromTime AND e.creationTime < :toTime AND ";
            queryParameters.put("fromTime", fromTime);
            queryParameters.put("toTime", toTime);
        }
        filters.remove(ExperimentStatusConstants.STATE);
        if (filters != null && filters.size() != 0) {
            for (String field : filters.keySet()) {
                String filterVal = filters.get(field);
                if (field.equals(ExperimentConstants.USER_NAME)) {
                    query += "e." + field + "= :username AND ";
                    queryParameters.put("username", filterVal);
                } else if (field.equals(ExperimentConstants.GATEWAY_ID)) {
                    query += "e." + field + "= :gateway_id AND ";
                    queryParameters.put("gateway_id", filterVal);
                } else if (field.equals(ExperimentConstants.PROJECT_ID)) {
                    query += "e." + field + "= :project_id AND ";
                    queryParameters.put("project_id", filterVal);
                } else {
                    if (filterVal.contains("*")) {
                        filterVal = filterVal.replaceAll("\\*", "");
                    }
                    query += "e." + field + " LIKE :" + field + " AND ";
                    queryParameters.put(field, "%" + filterVal + "%");
                }
            }
        }
        query = query.substring(0, query.length() - 5);
        // ordering
        if (orderByIdentifier != null && resultOrderType != null && orderByIdentifier.equals(Constants.FieldConstants.ExperimentConstants.CREATION_TIME)) {
            String order = (resultOrderType == ResultOrderType.ASC) ? "ASC" : "DESC";
            query += " ORDER BY e." + ExperimentConstants.CREATION_TIME + " " + order;
        }
        em = ExpCatResourceUtils.getEntityManager();
        em.getTransaction().begin();
        Query q;
        // pagination
        if (offset >= 0 && limit >= 0) {
            q = em.createQuery(query).setFirstResult(offset).setMaxResults(limit);
        } else {
            q = em.createQuery(query);
        }
        for (String parameterName : queryParameters.keySet()) {
            q.setParameter(parameterName, queryParameters.get(parameterName));
        }
        List resultList = q.getResultList();
        for (Object o : resultList) {
            ExperimentSummary experimentSummary = (ExperimentSummary) o;
            ExperimentSummaryResource experimentSummaryResource = (ExperimentSummaryResource) Utils.getResource(ResourceType.EXPERIMENT_SUMMARY, experimentSummary);
            result.add(experimentSummaryResource);
        }
        em.getTransaction().commit();
        em.close();
    } catch (Exception e) {
        logger.error(e.getMessage(), e);
        throw new RegistryException(e);
    } finally {
        if (em != null && em.isOpen()) {
            if (em.getTransaction().isActive()) {
                em.getTransaction().rollback();
            }
            em.close();
        }
    }
    return result;
}