Examples with WorkflowRuntimeException org.apache.airavata.workflow.model.exceptions.WorkflowRuntimeException used on opensource projects

Example 16 with WorkflowRuntimeException

use of org.apache.airavata.workflow.model.exceptions.WorkflowRuntimeException in project airavata by apache.

the class S3InputNode method edgeWasAdded.

/**
 * Called whan an Edge was added to the parameter port. Change the name of this node.
 *
 * @throws GraphException
 *
 * @see org.apache.airavata.workflow.model.graph.impl.NodeImpl#edgeWasAdded(org.apache.airavata.workflow.model.graph.impl.EdgeImpl)
 */
@Override
protected void edgeWasAdded(Edge edge) throws GraphException {
    super.edgeWasAdded(edge);
    // TODO organize this.
    if (edge instanceof DataEdge) {
        DataEdge dataEdge = (DataEdge) edge;
        DataPort toPort = dataEdge.getToPort();
        DataType toType = toPort.getType();
        List<DataEdge> edges = getEdges();
        if (edges.size() == 1) {
            // The first edge.
            setParameterType(toType);
            if (!isConfigured() && toPort instanceof WSPort) {
                // Copy
                copyDefaultConfiguration((WSPort) toPort);
            }
        } else if (edges.size() > 1) {
            // Not the first edge.
            DataType parameterType = getParameterType();
            if (!toType.equals(WSConstants.XSD_ANY_TYPE) && !parameterType.equals(toType)) {
                throw new GraphException("Cannot connect ports with different types.");
            }
        } else {
            // Should not happen.
            throw new WorkflowRuntimeException("edges.size(): " + edges.size());
        }
    }
}

Example 17 with WorkflowRuntimeException

use of org.apache.airavata.workflow.model.exceptions.WorkflowRuntimeException in project airavata by apache.

the class DifferedInputNode method edgeWasAdded.

/**
 * Called when an Edge was added to the parameter port. Change the name of
 * this node.
 *
 * @throws GraphException
 *
 * @see edu.indiana.extreme.xbaya.graph.impl.NodeImpl#edgeWasAdded(edu.indiana.extreme.xbaya.graph.impl.EdgeImpl)
 */
@Override
protected void edgeWasAdded(Edge edge) throws GraphException {
    super.edgeWasAdded(edge);
    // TODO organize this.
    if (edge instanceof DataEdge) {
        DataEdge dataEdge = (DataEdge) edge;
        DataPort toPort = dataEdge.getToPort();
        DataType toType = toPort.getType();
        List<DataEdge> edges = getEdges();
        if (edges.size() == 1) {
            // The first edge.
            setParameterType(toType);
            if (!isConfigured() && toPort instanceof WSPort) {
                // Copy
                copyDefaultConfiguration((WSPort) toPort);
            }
        } else if (edges.size() > 1) {
            // Not the first edge.
            DataType parameterType = getParameterType();
            if (!toType.equals(WSConstants.XSD_ANY_TYPE) && !parameterType.equals(toType)) {
                throw new GraphException("Cannot connect ports with different types.");
            }
        } else {
            // Should not happen.
            throw new WorkflowRuntimeException("edges.size(): " + edges.size());
        }
    }
}

Example 18 with WorkflowRuntimeException

use of org.apache.airavata.workflow.model.exceptions.WorkflowRuntimeException in project airavata by apache.

the class SystemNode method edgeWasAdded.

/**
 * @throws GraphException
 * @see org.apache.airavata.workflow.model.graph.impl.NodeImpl#edgeWasAdded(org.apache.airavata.workflow.model.graph.Edge)
 */
@Override
protected void edgeWasAdded(Edge edge) throws GraphException {
    super.edgeWasAdded(edge);
    GraphUtil.validateConnection(edge);
    Port fromPort = edge.getFromPort();
    Port toPort = edge.getToPort();
    if (edge instanceof DataEdge) {
        if (fromPort instanceof EPRPort) {
            // TODO
            return;
        }
        DataPort fromDataPort = (DataPort) fromPort;
        DataPort toDataPort = (DataPort) toPort;
        DataType fromType = fromDataPort.getType();
        DataType toType = toDataPort.getType();
        if (fromDataPort.getNode() == this) {
            // setType() propagates the change to the whole workflow.
            if (!(toType == null || toType.equals(WSConstants.XSD_ANY_TYPE))) {
                fromDataPort.copyType(toDataPort);
            }
        } else if (toDataPort.getNode() == this) {
            if (!(fromType == null || fromType.equals(WSConstants.XSD_ANY_TYPE))) {
                toDataPort.copyType(fromDataPort);
            }
        } else {
            throw new WorkflowRuntimeException();
        }
    }
}

Example 19 with WorkflowRuntimeException

use of org.apache.airavata.workflow.model.exceptions.WorkflowRuntimeException in project airavata by apache.

the class ComponentSelector method update.

/**
 * Updates all the registry entries.
 *
 * @throws ComponentRegistryException
 */
public void update() throws ComponentRegistryException {
    final List<ComponentRegistry> registries = new ArrayList<ComponentRegistry>();
    if (SwingUtilities.isEventDispatchThread()) {
        getRegistries(registries);
    } else {
        try {
            SwingUtilities.invokeAndWait(new Runnable() {

                public void run() {
                    getRegistries(registries);
                }
            });
        } catch (InterruptedException e) {
            // Should not happen.
            throw new WorkflowRuntimeException(e);
        } catch (InvocationTargetException e) {
            // Should not happen.
            throw new WorkflowRuntimeException(e);
        }
    }
    final List<ComponentTreeNode> newSubTrees = new ArrayList<ComponentTreeNode>();
    for (ComponentRegistry registry : registries) {
        ComponentTreeNode componentTree = ComponentController.getComponentTree(registry);
        newSubTrees.add(componentTree);
    }
    SwingUtilities.invokeLater(new Runnable() {

        public void run() {
            ComponentTreeNode root = ComponentSelector.this.treeModel.getRoot();
            ComponentSelector.this.treeModel.removeChildren(root);
            logger.debug("Removed all");
            for (ComponentTreeNode subTree : newSubTrees) {
                ComponentSelector.this.treeModel.addNodeInto(subTree, root);
            }
            makeVisible((ComponentTreeNode) root.getFirstChild());
        }
    });
}

Example 20 with WorkflowRuntimeException

use of org.apache.airavata.workflow.model.exceptions.WorkflowRuntimeException in project airavata by apache.

the class SchemaCompilerUtil method compile.

public static void compile(String[] args) {
    if (args.length == 0) {
        return;
    }
    Set flags = new HashSet();
    flags.add("h");
    flags.add("help");
    flags.add("usage");
    flags.add("license");
    flags.add("quiet");
    flags.add("verbose");
    flags.add("version");
    flags.add("dl");
    flags.add("noupa");
    flags.add("nopvr");
    flags.add("noann");
    flags.add("novdoc");
    flags.add("noext");
    flags.add("srconly");
    flags.add("debug");
    Set opts = new HashSet();
    opts.add("out");
    opts.add("name");
    opts.add("src");
    opts.add("d");
    opts.add("cp");
    opts.add("compiler");
    opts.add("javasource");
    // deprecated
    opts.add("jar");
    opts.add("ms");
    opts.add("mx");
    opts.add("repackage");
    opts.add("schemaCodePrinter");
    opts.add("extension");
    opts.add("extensionParms");
    opts.add("allowmdef");
    opts.add("catalog");
    CommandLine cl = new CommandLine(args, flags, opts);
    String[] badopts = cl.getBadOpts();
    if (badopts.length > 0) {
        for (int i = 0; i < badopts.length; i++) System.out.println("Unrecognized option: " + badopts[i]);
        return;
    }
    boolean verbose = (cl.getOpt("verbose") != null);
    boolean quiet = (cl.getOpt("quiet") != null);
    if (verbose)
        quiet = false;
    String outputfilename = cl.getOpt("out");
    String repackage = cl.getOpt("repackage");
    cl.getOpt("schemaCodePrinter");
    SchemaCodePrinter codePrinter = null;
    String name = cl.getOpt("name");
    boolean download = (cl.getOpt("dl") != null);
    boolean noUpa = (cl.getOpt("noupa") != null);
    boolean noPvr = (cl.getOpt("nopvr") != null);
    boolean noAnn = (cl.getOpt("noann") != null);
    boolean noVDoc = (cl.getOpt("novdoc") != null);
    boolean noExt = (cl.getOpt("noext") != null);
    boolean nojavac = (cl.getOpt("srconly") != null);
    boolean debug = (cl.getOpt("debug") != null);
    String allowmdef = cl.getOpt("allowmdef");
    Set mdefNamespaces = (allowmdef == null ? Collections.EMPTY_SET : new HashSet(Arrays.asList(XmlListImpl.split_list(allowmdef))));
    List extensions = new ArrayList();
    String classesdir = cl.getOpt("d");
    File classes = null;
    if (classesdir != null)
        classes = new File(classesdir);
    String srcdir = cl.getOpt("src");
    File src = null;
    if (srcdir != null)
        src = new File(srcdir);
    if (nojavac && srcdir == null && classes != null)
        src = classes;
    // create temp directory
    File tempdir = null;
    if (src == null || classes == null) {
        throw new WorkflowRuntimeException("Code gen src directory or classes directory is null");
    }
    File jarfile = null;
    if (outputfilename == null && classes == null && !nojavac)
        outputfilename = "xmltypes.jar";
    if (outputfilename != null)
        jarfile = new File(outputfilename);
    if (src == null)
        src = IOUtil.createDir(tempdir, "src");
    if (classes == null)
        classes = IOUtil.createDir(tempdir, "classes");
    File[] classpath = null;
    String cpString = cl.getOpt("cp");
    if (cpString != null) {
        String[] cpparts = cpString.split(File.pathSeparator);
        List cpList = new ArrayList();
        for (int i = 0; i < cpparts.length; i++) cpList.add(new File(cpparts[i]));
        classpath = (File[]) cpList.toArray(new File[cpList.size()]);
    } else {
        classpath = CodeGenUtil.systemClasspath();
    }
    String javasource = cl.getOpt("javasource");
    String compiler = cl.getOpt("compiler");
    String jar = cl.getOpt("jar");
    if (verbose && jar != null)
        System.out.println("The 'jar' option is no longer supported.");
    String memoryInitialSize = cl.getOpt("ms");
    String memoryMaximumSize = cl.getOpt("mx");
    File[] xsdFiles = cl.filesEndingWith(".xsd");
    File[] wsdlFiles = cl.filesEndingWith(".wsdl");
    File[] javaFiles = cl.filesEndingWith(".java");
    File[] configFiles = cl.filesEndingWith(".xsdconfig");
    URL[] urlFiles = cl.getURLs();
    if (xsdFiles.length + wsdlFiles.length + urlFiles.length == 0) {
        System.out.println("Could not find any xsd or wsdl files to process.");
        return;
    }
    File baseDir = cl.getBaseDir();
    URI baseURI = baseDir == null ? null : baseDir.toURI();
    XmlErrorPrinter err = new XmlErrorPrinter(verbose, baseURI);
    String catString = cl.getOpt("catalog");
    Parameters params = new Parameters();
    params.setBaseDir(baseDir);
    params.setXsdFiles(xsdFiles);
    params.setWsdlFiles(wsdlFiles);
    params.setJavaFiles(javaFiles);
    params.setConfigFiles(configFiles);
    params.setUrlFiles(urlFiles);
    params.setClasspath(classpath);
    params.setOutputJar(jarfile);
    params.setName(name);
    params.setSrcDir(src);
    params.setClassesDir(classes);
    params.setCompiler(compiler);
    params.setJavaSource(javasource);
    params.setMemoryInitialSize(memoryInitialSize);
    params.setMemoryMaximumSize(memoryMaximumSize);
    params.setNojavac(nojavac);
    params.setQuiet(quiet);
    params.setVerbose(verbose);
    params.setDownload(download);
    params.setNoUpa(noUpa);
    params.setNoPvr(noPvr);
    params.setNoAnn(noAnn);
    params.setNoVDoc(noVDoc);
    params.setNoExt(noExt);
    params.setDebug(debug);
    params.setErrorListener(err);
    params.setRepackage(repackage);
    params.setExtensions(extensions);
    params.setMdefNamespaces(mdefNamespaces);
    params.setCatalogFile(catString);
    params.setSchemaCodePrinter(codePrinter);
    compile(params);
}