Examples with StringUtils.isEmpty org.apache.commons.lang3.StringUtils.isEmpty used on opensource projects

Example 71 with StringUtils.isEmpty

use of org.apache.commons.lang3.StringUtils.isEmpty in project dhis2-core by dhis2.

the class JdbcEventStore method getEvents.

// -------------------------------------------------------------------------
// EventStore implementation
// -------------------------------------------------------------------------
@Override
public List<Event> getEvents(EventSearchParams params, List<OrganisationUnit> organisationUnits, Map<String, Set<String>> psdesWithSkipSyncTrue) {
    User user = currentUserService.getCurrentUser();
    setAccessiblePrograms(user, params);
    Map<String, Event> eventUidToEventMap = new HashMap<>(params.getPageSizeWithDefault());
    List<Event> events = new ArrayList<>();
    List<Long> relationshipIds = new ArrayList<>();
    final Gson gson = new Gson();
    String sql = buildSql(params, organisationUnits, user);
    SqlRowSet rowSet = jdbcTemplate.queryForRowSet(sql);
    log.debug("Event query SQL: " + sql);
    Set<String> notes = new HashSet<>();
    while (rowSet.next()) {
        if (rowSet.getString("psi_uid") == null || (params.getCategoryOptionCombo() == null && !isSuper(user) && !userHasAccess(rowSet))) {
            continue;
        }
        String psiUid = rowSet.getString("psi_uid");
        Event event;
        if (!eventUidToEventMap.containsKey(psiUid)) {
            validateIdentifiersPresence(rowSet, params.getIdSchemes(), true);
            event = new Event();
            eventUidToEventMap.put(psiUid, event);
            if (!params.isSkipEventId()) {
                event.setUid(psiUid);
                event.setEvent(psiUid);
            }
            event.setTrackedEntityInstance(rowSet.getString("tei_uid"));
            event.setStatus(EventStatus.valueOf(rowSet.getString("psi_status")));
            ProgramType programType = ProgramType.fromValue(rowSet.getString("p_type"));
            event.setProgram(rowSet.getString("p_identifier"));
            event.setProgramType(programType);
            event.setProgramStage(rowSet.getString("ps_identifier"));
            event.setOrgUnit(rowSet.getString("ou_identifier"));
            event.setDeleted(rowSet.getBoolean("psi_deleted"));
            if (programType != ProgramType.WITHOUT_REGISTRATION) {
                event.setEnrollment(rowSet.getString("pi_uid"));
                event.setEnrollmentStatus(EnrollmentStatus.fromProgramStatus(ProgramStatus.valueOf(rowSet.getString("pi_status"))));
                event.setFollowup(rowSet.getBoolean("pi_followup"));
            }
            if (params.getCategoryOptionCombo() == null && !isSuper(user)) {
                event.setOptionSize(rowSet.getInt("option_size"));
            }
            event.setAttributeOptionCombo(rowSet.getString("coc_identifier"));
            event.setAttributeCategoryOptions(rowSet.getString("deco_uid"));
            event.setTrackedEntityInstance(rowSet.getString("tei_uid"));
            event.setStoredBy(rowSet.getString("psi_storedby"));
            event.setOrgUnitName(rowSet.getString("ou_name"));
            event.setDueDate(DateUtils.getIso8601NoTz(rowSet.getDate("psi_duedate")));
            event.setEventDate(DateUtils.getIso8601NoTz(rowSet.getDate("psi_executiondate")));
            event.setCreated(DateUtils.getIso8601NoTz(rowSet.getDate("psi_created")));
            event.setCreatedByUserInfo(jsonToUserInfo(rowSet.getString("psi_createdbyuserinfo"), jsonMapper));
            event.setLastUpdated(DateUtils.getIso8601NoTz(rowSet.getDate("psi_lastupdated")));
            event.setLastUpdatedByUserInfo(jsonToUserInfo(rowSet.getString("psi_lastupdatedbyuserinfo"), jsonMapper));
            event.setCompletedBy(rowSet.getString("psi_completedby"));
            event.setCompletedDate(DateUtils.getIso8601NoTz(rowSet.getDate("psi_completeddate")));
            if (rowSet.getObject("psi_geometry") != null) {
                try {
                    Geometry geom = new WKTReader().read(rowSet.getString("psi_geometry"));
                    event.setGeometry(geom);
                } catch (ParseException e) {
                    log.error("Unable to read geometry for event '" + event.getUid() + "': ", e);
                }
            }
            if (rowSet.getObject("user_assigned") != null) {
                event.setAssignedUser(rowSet.getString("user_assigned"));
                event.setAssignedUserUsername(rowSet.getString("user_assigned_username"));
                event.setAssignedUserDisplayName(rowSet.getString("user_assigned_name"));
            }
            events.add(event);
        } else {
            event = eventUidToEventMap.get(psiUid);
            String attributeCategoryCombination = event.getAttributeCategoryOptions();
            String currentAttributeCategoryCombination = rowSet.getString("deco_uid");
            if (!attributeCategoryCombination.contains(currentAttributeCategoryCombination)) {
                event.setAttributeCategoryOptions(attributeCategoryCombination + ";" + currentAttributeCategoryCombination);
            }
        }
        if (!StringUtils.isEmpty(rowSet.getString("psi_eventdatavalues"))) {
            Set<EventDataValue> eventDataValues = convertEventDataValueJsonIntoSet(rowSet.getString("psi_eventdatavalues"));
            for (EventDataValue dv : eventDataValues) {
                DataValue dataValue = convertEventDataValueIntoDtoDataValue(dv);
                if (params.isSynchronizationQuery()) {
                    if (psdesWithSkipSyncTrue.containsKey(rowSet.getString("ps_uid")) && psdesWithSkipSyncTrue.get(rowSet.getString("ps_uid")).contains(dv.getDataElement())) {
                        dataValue.setSkipSynchronization(true);
                    } else {
                        dataValue.setSkipSynchronization(false);
                    }
                }
                event.getDataValues().add(dataValue);
            }
        }
        if (rowSet.getString("psinote_value") != null && !notes.contains(rowSet.getString("psinote_id"))) {
            Note note = new Note();
            note.setNote(rowSet.getString("psinote_uid"));
            note.setValue(rowSet.getString("psinote_value"));
            note.setStoredDate(DateUtils.getIso8601NoTz(rowSet.getDate("psinote_storeddate")));
            note.setStoredBy(rowSet.getString("psinote_storedby"));
            if (rowSet.getObject("usernote_id") != null) {
                note.setLastUpdatedBy(UserInfoSnapshot.of(rowSet.getLong("usernote_id"), rowSet.getString("usernote_code"), rowSet.getString("usernote_uid"), rowSet.getString("usernote_username"), rowSet.getString("userinfo_firstname"), rowSet.getString("userinfo_surname")));
            }
            note.setLastUpdated(rowSet.getDate("psinote_lastupdated"));
            event.getNotes().add(note);
            notes.add(rowSet.getString("psinote_id"));
        }
        if (params.isIncludeRelationships() && rowSet.getObject("psi_rl") != null) {
            PGobject pGobject = (PGobject) rowSet.getObject("psi_rl");
            if (pGobject != null) {
                String value = pGobject.getValue();
                relationshipIds.addAll(Lists.newArrayList(gson.fromJson(value, Long[].class)));
            }
        }
    }
    final Multimap<String, Relationship> map = eventStore.getRelationshipsByIds(relationshipIds);
    if (!map.isEmpty()) {
        events.forEach(e -> e.getRelationships().addAll(map.get(e.getEvent())));
    }
    IdSchemes idSchemes = ObjectUtils.firstNonNull(params.getIdSchemes(), new IdSchemes());
    IdScheme dataElementIdScheme = idSchemes.getDataElementIdScheme();
    if (dataElementIdScheme != IdScheme.ID && dataElementIdScheme != IdScheme.UID) {
        CachingMap<String, String> dataElementUidToIdentifierCache = new CachingMap<>();
        List<Collection<DataValue>> dataValuesList = events.stream().map(Event::getDataValues).collect(Collectors.toList());
        populateCache(dataElementIdScheme, dataValuesList, dataElementUidToIdentifierCache);
        convertDataValuesIdentifiers(dataElementIdScheme, dataValuesList, dataElementUidToIdentifierCache);
    }
    if (params.getCategoryOptionCombo() == null && !isSuper(user)) {
        return events.stream().filter(ev -> ev.getAttributeCategoryOptions() != null && splitToArray(ev.getAttributeCategoryOptions(), TextUtils.SEMICOLON).size() == ev.getOptionSize()).collect(Collectors.toList());
    }
    return events;
}

Example 72 with StringUtils.isEmpty

use of org.apache.commons.lang3.StringUtils.isEmpty in project dhis2-core by dhis2.

the class DataValueCheck method validateMandatoryAttributes.

public void validateMandatoryAttributes(ImportConflicts importConflicts, WorkContext ctx, ImmutableEvent event) {
    if (StringUtils.isEmpty(event.getProgramStage()))
        return;
    final IdScheme programStageIdScheme = ctx.getImportOptions().getIdSchemes().getProgramStageIdScheme();
    final IdScheme dataElementIdScheme = ctx.getImportOptions().getIdSchemes().getDataElementIdScheme();
    final Map<String, Set<EventDataValue>> eventDataValueMap = ctx.getEventDataValueMap();
    final boolean allowSingleUpdates = ctx.getImportOptions().isMergeDataValues();
    ProgramStage programStage = ctx.getProgramStage(programStageIdScheme, event.getProgramStage());
    final Set<ProgramStageDataElement> mandatoryDataElements = getMandatoryProgramStageDataElements(programStage);
    // Data Element IDs associated to the current event
    Set<String> dataValues = eventDataValueMap.get(event.getUid()).stream().map(EventDataValue::getDataElement).collect(Collectors.toSet());
    if (allowSingleUpdates) {
        final ProgramStageInstance programStageInstance = ctx.getProgramStageInstanceMap().get(event.getUid());
        dataValues.addAll(programStageInstance.getEventDataValues().stream().filter(dv -> !StringUtils.isEmpty(dv.getValue().trim())).map(EventDataValue::getDataElement).collect(Collectors.toSet()));
    }
    for (ProgramStageDataElement mandatoryDataElement : mandatoryDataElements) {
        String resolvedDataElementId = getIdentifierBasedOnIdScheme(mandatoryDataElement.getDataElement(), dataElementIdScheme);
        if (!dataValues.contains(resolvedDataElementId)) {
            importConflicts.addConflict(resolvedDataElementId, "value_required_but_not_provided");
        }
    }
}

Example 73 with StringUtils.isEmpty

use of org.apache.commons.lang3.StringUtils.isEmpty in project dhis2-core by dhis2.

the class AbstractTrackerPersister method handleTrackedEntityAttributeValues.

protected void handleTrackedEntityAttributeValues(Session session, TrackerPreheat preheat, List<Attribute> payloadAttributes, TrackedEntityInstance trackedEntityInstance) {
    if (payloadAttributes.isEmpty()) {
        return;
    }
    Map<String, TrackedEntityAttributeValue> attributeValueByUid = trackedEntityInstance.getTrackedEntityAttributeValues().stream().collect(Collectors.toMap(teav -> teav.getAttribute().getUid(), Function.identity()));
    payloadAttributes.forEach(attribute -> {
        // We cannot get the value from attributeToStore because it uses
        // encryption logic, so we need to use the one from payload
        boolean isDelete = StringUtils.isEmpty(attribute.getValue());
        TrackedEntityAttributeValue trackedEntityAttributeValue = attributeValueByUid.get(attribute.getAttribute());
        boolean isUpdated = false;
        boolean isNew = Objects.isNull(trackedEntityAttributeValue);
        if (isDelete && isNew) {
            return;
        }
        if (isDelete) {
            delete(session, preheat, trackedEntityAttributeValue, trackedEntityInstance);
        } else {
            if (!isNew) {
                isUpdated = !trackedEntityAttributeValue.getPlainValue().equals(attribute.getValue());
            }
            trackedEntityAttributeValue = Optional.ofNullable(trackedEntityAttributeValue).orElseGet(() -> new TrackedEntityAttributeValue().setAttribute(getTrackedEntityAttributeFromPreheat(preheat, attribute.getAttribute())).setEntityInstance(trackedEntityInstance)).setStoredBy(attribute.getStoredBy()).setValue(attribute.getValue());
            saveOrUpdate(session, preheat, isNew, trackedEntityInstance, trackedEntityAttributeValue, isUpdated);
        }
        handleReservedValue(trackedEntityAttributeValue);
    });
}

Example 74 with StringUtils.isEmpty

use of org.apache.commons.lang3.StringUtils.isEmpty in project dhis2-core by dhis2.

the class TrackerBundleParamsConverter method convert.

/**
 * Iterates over the collections of a dataBundle. If any objects in those
 * collections have objects nested within them, they are extracted. For each
 * object we process, we make sure all references are valid as well.
 *
 * @param dataBundle containing collections to check and update.
 * @return a dataBundle with a flattened data structure, and valid uid
 *         references.
 */
@Override
public TrackerBundleParams convert(TrackerBundleParams dataBundle) {
    Map<String, TrackedEntity> trackedEntityMap = new HashMap<>();
    Map<String, Enrollment> enrollmentHashMap = new HashMap<>();
    Map<String, Event> eventHashMap = new HashMap<>();
    Map<String, Relationship> relationshipHashMap = new HashMap<>();
    // Extract all enrollments and relationships, and set parent reference.
    for (TrackedEntity te : dataBundle.getTrackedEntities()) {
        updateTrackedEntityReferences(te);
        trackedEntityMap.put(te.getTrackedEntity(), te);
        extractEnrollments(te).forEach(enrollment -> enrollmentHashMap.put(enrollment.getEnrollment(), enrollment));
        extractRelationships(te).forEach(relationship -> relationshipHashMap.put(relationship.getRelationship(), relationship));
    }
    // Set UID for all enrollments and notes
    dataBundle.getEnrollments().stream().peek(enrollment -> updateEnrollmentReferences(enrollment, enrollment.getTrackedEntity())).forEach(enrollment -> enrollmentHashMap.put(enrollment.getEnrollment(), enrollment));
    // Extract all events and relationships, and set parent references
    for (Enrollment enrollment : enrollmentHashMap.values()) {
        extractEvents(enrollment).forEach(event -> eventHashMap.put(event.getEvent(), event));
        extractRelationships(enrollment).forEach(relationship -> relationshipHashMap.put(relationship.getRelationship(), relationship));
        enrollment.setNotes(enrollment.getNotes().stream().filter(note -> !StringUtils.isEmpty(note.getValue())).peek(this::updateNoteReferences).collect(Collectors.toList()));
    }
    // Set UID for all events and notes
    dataBundle.getEvents().stream().peek(event -> updateEventReferences(event, event.getEnrollment())).forEach(event -> eventHashMap.put(event.getEvent(), event));
    // Extract all relationships
    for (Event event : eventHashMap.values()) {
        extractRelationships(event).forEach(relationship -> relationshipHashMap.put(relationship.getRelationship(), relationship));
        event.setNotes(event.getNotes().stream().filter(note -> !StringUtils.isEmpty(note.getValue())).peek(this::updateNoteReferences).collect(Collectors.toList()));
    }
    // Set UID for all relationships
    dataBundle.getRelationships().stream().peek(this::updateRelationshipReferences).forEach(relationship -> relationshipHashMap.put(relationship.getRelationship(), relationship));
    return TrackerBundleParams.builder().trackedEntities(new ArrayList<>(trackedEntityMap.values())).enrollments(new ArrayList<>(enrollmentHashMap.values())).events(new ArrayList<>(eventHashMap.values())).relationships(new ArrayList<>(relationshipHashMap.values())).build();
}

Example 75 with StringUtils.isEmpty

use of org.apache.commons.lang3.StringUtils.isEmpty in project mxisd by kamax-io.

the class RegistrationManager method execute.

public RegistrationReply execute(URI target, JsonObject request) {
    HttpPost registerProxyRq = RestClientUtils.post(resolveProxyUrl(target), GsonUtil.get(), request);
    try (CloseableHttpResponse response = client.execute(registerProxyRq)) {
        int status = response.getStatusLine().getStatusCode();
        if (status == 200) {
            // The user managed to register. We check if it had a session
            String sessionId = GsonUtil.findObj(request, "auth").flatMap(auth -> GsonUtil.findString(auth, "session")).orElse("");
            if (StringUtils.isEmpty(sessionId)) {
                // No session ID was provided. This is an edge case we do not support for now as investigation is needed
                // to ensure how and when this happens.
                HttpPost newSessReq = RestClientUtils.post(resolveProxyUrl(target), GsonUtil.get(), new JsonObject());
                try (CloseableHttpResponse newSessRes = client.execute(newSessReq)) {
                    RegistrationReply reply = new RegistrationReply();
                    reply.setStatus(newSessRes.getStatusLine().getStatusCode());
                    reply.setBody(GsonUtil.parseObj(EntityUtils.toString(newSessRes.getEntity())));
                    return reply;
                }
            }
        }
        throw new NotImplementedException("Registration");
    } catch (IOException e) {
        throw new RemoteHomeServerException(e.getMessage());
    }
}