Examples with UmlsConcept org.apache.ctakes.typesystem.type.refsem.UmlsConcept used on opensource projects

Example 1 with UmlsConcept

use of org.apache.ctakes.typesystem.type.refsem.UmlsConcept in project tika by apache.

the class CTAKESUtils method getAnnotationProperty.

/**
	 * Returns the annotation value based on the given annotation type.
	 * 
	 * @param annotation
	 *            {@see IdentifiedAnnotation} object.
	 * @param property
	 *            {@see CTAKESAnnotationProperty} enum used to identify the
	 *            annotation type.
	 * @return the annotation value.
	 */
public static String getAnnotationProperty(IdentifiedAnnotation annotation, CTAKESAnnotationProperty property) {
    String value = null;
    if (property == CTAKESAnnotationProperty.BEGIN) {
        value = Integer.toString(annotation.getBegin());
    } else if (property == CTAKESAnnotationProperty.END) {
        value = Integer.toString(annotation.getEnd());
    } else if (property == CTAKESAnnotationProperty.CONDITIONAL) {
        value = Boolean.toString(annotation.getConditional());
    } else if (property == CTAKESAnnotationProperty.CONFIDENCE) {
        value = Float.toString(annotation.getConfidence());
    } else if (property == CTAKESAnnotationProperty.DISCOVERY_TECNIQUE) {
        value = Integer.toString(annotation.getDiscoveryTechnique());
    } else if (property == CTAKESAnnotationProperty.GENERIC) {
        value = Boolean.toString(annotation.getGeneric());
    } else if (property == CTAKESAnnotationProperty.HISTORY_OF) {
        value = Integer.toString(annotation.getHistoryOf());
    } else if (property == CTAKESAnnotationProperty.ID) {
        value = Integer.toString(annotation.getId());
    } else if (property == CTAKESAnnotationProperty.ONTOLOGY_CONCEPT_ARR) {
        FSArray mentions = annotation.getOntologyConceptArr();
        StringBuilder sb = new StringBuilder();
        if (mentions != null) {
            for (int i = 0; i < mentions.size(); i++) {
                if (mentions.get(i) instanceof UmlsConcept) {
                    UmlsConcept concept = (UmlsConcept) mentions.get(i);
                    sb.append(concept.getCui());
                    if (i < mentions.size() - 1) {
                        sb.append(",");
                    }
                }
            }
        }
        value = sb.toString();
    } else if (property == CTAKESAnnotationProperty.POLARITY) {
        value = Integer.toString(annotation.getPolarity());
    }
    return value;
}