Examples with CompressionCodecFactory org.apache.hadoop.io.compress.CompressionCodecFactory used on opensource projects

Example 11 with CompressionCodecFactory

use of org.apache.hadoop.io.compress.CompressionCodecFactory in project hadoop by apache.

the class FSImageCompression method createCompression.

/**
   * Create a compression instance using the codec specified by
   * <code>codecClassName</code>
   */
static FSImageCompression createCompression(Configuration conf, String codecClassName) throws IOException {
    CompressionCodecFactory factory = new CompressionCodecFactory(conf);
    CompressionCodec codec = factory.getCodecByClassName(codecClassName);
    if (codec == null) {
        throw new IOException("Not a supported codec: " + codecClassName);
    }
    return new FSImageCompression(codec);
}

Example 12 with CompressionCodecFactory

use of org.apache.hadoop.io.compress.CompressionCodecFactory in project hadoop-pcap by RIPE-NCC.

the class PcapInputFormat method initPcapRecordReader.

public static PcapRecordReader initPcapRecordReader(Path path, long start, long length, Reporter reporter, Configuration conf) throws IOException {
    FileSystem fs = path.getFileSystem(conf);
    FSDataInputStream baseStream = fs.open(path);
    DataInputStream stream = baseStream;
    CompressionCodecFactory compressionCodecs = new CompressionCodecFactory(conf);
    final CompressionCodec codec = compressionCodecs.getCodec(path);
    if (codec != null)
        stream = new DataInputStream(codec.createInputStream(stream));
    PcapReader reader = initPcapReader(stream, conf);
    return new PcapRecordReader(reader, start, length, baseStream, stream, reporter);
}

Example 13 with CompressionCodecFactory

use of org.apache.hadoop.io.compress.CompressionCodecFactory in project hadoop-pcap by RIPE-NCC.

the class PcapInputFormat method initPcapRecordReader.

public static PcapRecordReader initPcapRecordReader(Path path, long start, long length, TaskAttemptContext context) throws IOException {
    Configuration conf = context.getConfiguration();
    FileSystem fs = path.getFileSystem(conf);
    FSDataInputStream baseStream = fs.open(path);
    DataInputStream stream = baseStream;
    CompressionCodecFactory compressionCodecs = new CompressionCodecFactory(conf);
    final CompressionCodec codec = compressionCodecs.getCodec(path);
    if (codec != null)
        stream = new DataInputStream(codec.createInputStream(stream));
    PcapReader reader = initPcapReader(stream, conf);
    return new PcapRecordReader(reader, start, length, baseStream, stream, context);
}

Example 14 with CompressionCodecFactory

use of org.apache.hadoop.io.compress.CompressionCodecFactory in project jena by apache.

the class AbstractBlockBasedNodeTupleReader method initialize.

@Override
public void initialize(InputSplit genericSplit, TaskAttemptContext context) throws IOException {
    LOG.debug("initialize({}, {})", genericSplit, context);
    // Assuming file split
    if (!(genericSplit instanceof FileSplit))
        throw new IOException("This record reader only supports FileSplit inputs");
    FileSplit split = (FileSplit) genericSplit;
    // Configuration
    Configuration config = context.getConfiguration();
    this.ignoreBadTuples = config.getBoolean(RdfIOConstants.INPUT_IGNORE_BAD_TUPLES, true);
    if (this.ignoreBadTuples)
        LOG.warn("Configured to ignore bad tuples, parsing errors will be logged and further parsing aborted but no user visible errors will be thrown.  Consider setting {} to false to disable this behaviour", RdfIOConstants.INPUT_IGNORE_BAD_TUPLES);
    // Figure out what portion of the file to read
    start = split.getStart();
    long end = start + split.getLength();
    final Path file = split.getPath();
    long totalLength = file.getFileSystem(context.getConfiguration()).getFileStatus(file).getLen();
    boolean readToEnd = end == totalLength;
    CompressionCodecFactory factory = new CompressionCodecFactory(config);
    this.compressionCodecs = factory.getCodec(file);
    LOG.info(String.format("Got split with start %d and length %d for file with total length of %d", new Object[] { start, split.getLength(), totalLength }));
    // Open the file and prepare the input stream
    FileSystem fs = file.getFileSystem(config);
    FSDataInputStream fileIn = fs.open(file);
    this.length = split.getLength();
    if (start > 0)
        fileIn.seek(start);
    if (this.compressionCodecs != null) {
        // Compressed input
        // For compressed input NLineInputFormat will have failed to find
        // any line breaks and will give us a split from 0 -> (length - 1)
        // Add 1 and re-verify readToEnd so we can abort correctly if ever
        // given a partial split of a compressed file
        end++;
        readToEnd = end == totalLength;
        if (start > 0 || !readToEnd)
            throw new IOException("This record reader can only be used with compressed input where the split is a whole file");
        input = new TrackedInputStream(this.compressionCodecs.createInputStream(fileIn));
    } else {
        if (readToEnd) {
            input = new TrackedInputStream(fileIn);
        } else {
            // Need to limit the portion of the file we are reading
            input = new BlockInputStream(fileIn, split.getLength());
        }
    }
    // Set up background thread for parser
    iter = this.getPipedIterator();
    this.stream = this.getPipedStream(iter, this.input);
    RDFParserBuilder builder = RdfIOUtils.createRDFParserBuilder(context, file);
    Runnable parserRunnable = this.createRunnable(this, this.input, stream, this.getRdfLanguage(), builder);
    this.parserThread = new Thread(parserRunnable);
    this.parserThread.setDaemon(true);
    this.parserThread.start();
}

Example 15 with CompressionCodecFactory

use of org.apache.hadoop.io.compress.CompressionCodecFactory in project jena by apache.

the class AbstractLineBasedNodeTupleReader method initialize.

@Override
public final void initialize(InputSplit genericSplit, TaskAttemptContext context) throws IOException {
    LOG.debug("initialize({}, {})", genericSplit, context);
    // Assuming file split
    if (!(genericSplit instanceof FileSplit))
        throw new IOException("This record reader only supports FileSplit inputs");
    FileSplit split = (FileSplit) genericSplit;
    // Intermediate : RDFParser but need to make a Iterator<Quad/Triple>
    LabelToNode labelToNode = RdfIOUtils.createLabelToNode(context, split.getPath());
    maker = new ParserProfileStd(RiotLib.factoryRDF(labelToNode), ErrorHandlerFactory.errorHandlerStd, IRIResolver.create(), PrefixMapFactory.createForInput(), null, true, false);
    Configuration config = context.getConfiguration();
    this.ignoreBadTuples = config.getBoolean(RdfIOConstants.INPUT_IGNORE_BAD_TUPLES, true);
    if (this.ignoreBadTuples)
        LOG.warn("Configured to ignore bad tuples, parsing errors will be logged and the bad line skipped but no errors will be thrownConsider setting {} to false to disable this behaviour", RdfIOConstants.INPUT_IGNORE_BAD_TUPLES);
    // Figure out what portion of the file to read
    this.maxLineLength = config.getInt(HadoopIOConstants.MAX_LINE_LENGTH, Integer.MAX_VALUE);
    start = split.getStart();
    end = start + split.getLength();
    final Path file = split.getPath();
    long totalLength = file.getFileSystem(context.getConfiguration()).getFileStatus(file).getLen();
    compressionCodecs = new CompressionCodecFactory(config);
    final CompressionCodec codec = compressionCodecs.getCodec(file);
    LOG.info(String.format("Got split with start %d and length %d for file with total length of %d", new Object[] { start, split.getLength(), totalLength }));
    // Open the file and seek to the start of the split
    FileSystem fs = file.getFileSystem(config);
    FSDataInputStream fileIn = fs.open(file);
    boolean skipFirstLine = false;
    if (codec != null) {
        // Add 1 and verify we got complete split
        if (totalLength > split.getLength() + 1)
            throw new IOException("This record reader can only be used with compressed input where the split covers the whole file");
        in = new LineReader(codec.createInputStream(fileIn), config);
        estLength = end;
        end = Long.MAX_VALUE;
    } else {
        // Uncompressed input
        if (start != 0) {
            skipFirstLine = true;
            --start;
            fileIn.seek(start);
        }
        in = new LineReader(fileIn, config);
    }
    // NLineInputFormat will provide the split information to use
    if (skipFirstLine) {
        start += in.readLine(new Text(), 0, (int) Math.min(Integer.MAX_VALUE, end - start));
    }
    this.pos = start;
}