Examples with PhonyIRIMapper org.apache.stanbol.commons.owl.PhonyIRIMapper used on opensource projects

Example 1 with PhonyIRIMapper

use of org.apache.stanbol.commons.owl.PhonyIRIMapper in project stanbol by apache.

the class ClerezzaOntologyProvider method toOWLOntology.

/**
 * @param graphName
 * @param forceMerge
 *            if set to false, the selected import management policy will be applied.
 * @return
 * @throws OWLOntologyCreationException
 */
protected OWLOntology toOWLOntology(IRI graphName, boolean forceMerge) throws OWLOntologyCreationException {
    log.debug("Exporting graph to OWLOntology");
    log.debug(" -- ImmutableGraph name : {}", graphName);
    OWLOntologyManager mgr = OWLManager.createOWLOntologyManager();
    // Never try to import
    mgr.addIRIMapper(new PhonyIRIMapper(Collections.<org.semanticweb.owlapi.model.IRI>emptySet()));
    Set<OWLOntologyID> loaded = new HashSet<OWLOntologyID>();
    Graph graph = store.getGraph(graphName);
    IRI ontologyId = null;
    // Get the id of this ontology.
    Iterator<Triple> itt = graph.filter(null, RDF.type, OWL.Ontology);
    if (itt.hasNext()) {
        BlankNodeOrIRI nl = itt.next().getSubject();
        if (nl instanceof IRI)
            ontologyId = (IRI) nl;
    }
    List<OWLOntologyID> revImps = new Stack<OWLOntologyID>();
    List<OWLOntologyID> lvl1 = new Stack<OWLOntologyID>();
    fillImportsReverse(keymap.getReverseMapping(graphName), revImps, lvl1);
    // If not set to merge (either by policy of by force), adopt the set import policy.
    if (!forceMerge && !ImportManagementPolicy.MERGE.equals(getImportManagementPolicy())) {
        OWLOntology o = OWLAPIToClerezzaConverter.clerezzaGraphToOWLOntology(graph, mgr);
        // TODO make it not flat.
        // Examining the reverse imports stack will flatten all imports.
        List<OWLOntologyChange> changes = new ArrayList<OWLOntologyChange>();
        OWLDataFactory df = OWLManager.getOWLDataFactory();
        List<OWLOntologyID> listToUse;
        switch(getImportManagementPolicy()) {
            case FLATTEN:
                listToUse = revImps;
                break;
            case PRESERVE:
                listToUse = lvl1;
                break;
            default:
                listToUse = lvl1;
                break;
        }
        for (OWLOntologyID ref : listToUse) if (!loaded.contains(ref) && !ref.equals(keymap.getReverseMapping(graphName))) {
            changes.add(new AddImport(o, df.getOWLImportsDeclaration(ref.getOntologyIRI())));
            loaded.add(ref);
        }
        o.getOWLOntologyManager().applyChanges(changes);
        return o;
    } else {
        // If there is just the root ontology, convert it straight away.
        if (revImps.size() == 1 && revImps.contains(graphName)) {
            OWLOntology o = OWLAPIToClerezzaConverter.clerezzaGraphToOWLOntology(graph, mgr);
            return o;
        }
        // FIXME when there's more than one ontology, this way of merging them seems inefficient...
        Graph tempGraph = new IndexedGraph();
        // The set of triples that will be excluded from the merge
        Set<Triple> exclusions = new HashSet<Triple>();
        // Examine all reverse imports
        for (OWLOntologyID ref : revImps) if (!loaded.contains(ref)) {
            // Get the triples
            Graph imported = // store.getTriples(ref);
            getStoredOntology(getKey(ref), Graph.class, false);
            // For each owl:Ontology
            Iterator<Triple> remove = imported.filter(null, RDF.type, OWL.Ontology);
            while (remove.hasNext()) {
                BlankNodeOrIRI subj = remove.next().getSubject();
                /*
                         * If it's not the root ontology, trash all its triples. If the root ontology is
                         * anonymous, all ontology annotations are to be trashed without distinction.
                         */
                if (ontologyId == null || !subj.equals(ontologyId)) {
                    Iterator<Triple> it = imported.filter(subj, null, null);
                    while (it.hasNext()) {
                        Triple t = it.next();
                        exclusions.add(t);
                    }
                }
            }
            Iterator<Triple> it = imported.iterator();
            while (it.hasNext()) {
                Triple t = it.next();
                if (!exclusions.contains(t))
                    tempGraph.add(t);
            }
            loaded.add(ref);
        }
        // online.
        return OWLAPIToClerezzaConverter.clerezzaGraphToOWLOntology(tempGraph, mgr);
    }
}

Example 2 with PhonyIRIMapper

use of org.apache.stanbol.commons.owl.PhonyIRIMapper in project stanbol by apache.

the class TestOntologyCollectors method spacePreservesImports.

@Test
public void spacePreservesImports() throws Exception {
    InputStream content = getClass().getResourceAsStream("/ontologies/characters_all.owl");
    URL url = getClass().getResource("/ontologies/characters_all.owl");
    OWLOntologyManager mgr = OWLManager.createOWLOntologyManager();
    mgr.addOntologyLoaderListener(new OWLOntologyLoaderListener() {

        @Override
        public void startedLoadingOntology(LoadingStartedEvent arg0) {
        }

        @Override
        public void finishedLoadingOntology(LoadingFinishedEvent arg0) {
            log.info((arg0.isSuccessful() ? "Loaded" : "Failed") + (arg0.isImported() ? " imported " : " ") + "ontology " + arg0.getDocumentIRI());
        }
    });
    mgr.addIRIMapper(new PhonyIRIMapper(null));
    File f = new File(url.toURI());
    OntologyInputSource<OWLOntology> src = new ParentPathInputSource(f, mgr);
    // OntologyInputSource<OWLOntology> src = new RootOntologyIRISource(IRI.create(f), mgr);
    // OntologyInputSource<OWLOntology> src = new OntologyContentInputSource(content,mgr);
    OWLOntology original = src.getRootOntology();
    Assert.assertNotNull(original);
    OntologySpace spc = new CustomSpaceImpl("Test", scopeNs, ontologyProvider);
    spc.addOntology(src);
}

Example 3 with PhonyIRIMapper

use of org.apache.stanbol.commons.owl.PhonyIRIMapper in project stanbol by apache.

the class OWLAPIToClerezzaConverter method clerezzaGraphToOWLOntology.

/**
 * Converts a Clerezza {@link Graph} to an OWL API {@link OWLOntology}.
 *
 * @param mGraph
 *            {@link org.apache.clerezza.commons.rdf.Graph}
 * @return the equivalent OWL API {@link OWLOntology}.
 */
public static OWLOntology clerezzaGraphToOWLOntology(org.apache.clerezza.commons.rdf.Graph graph) {
    OWLOntologyManager mgr = OWLManager.createOWLOntologyManager();
    // Never try to import
    mgr.addIRIMapper(new PhonyIRIMapper(Collections.<IRI>emptySet()));
    return clerezzaGraphToOWLOntology(graph, mgr);
}