Examples with ReasoningServiceException org.apache.stanbol.reasoners.servicesapi.ReasoningServiceException used on opensource projects

Example 1 with ReasoningServiceException

use of org.apache.stanbol.reasoners.servicesapi.ReasoningServiceException in project stanbol by apache.

the class ReasoningServiceExecutor method executeOWLApiReasoningService.

/**
     * Executes the OWLApiReasoingService
     * 
     * @param task
     * @param s
     * @param input
     * @param rules
     * @param targetGraphID
     * @param parameters
     * @return
     * @throws InconsistentInputException
     * @throws ReasoningServiceException
     * @throws UnsupportedTaskException
     */
private ReasoningServiceResult<OWLOntology> executeOWLApiReasoningService(String task, OWLApiReasoningService s, OWLOntology input, List<SWRLRule> rules, String targetGraphID, boolean filtered, Map<String, List<String>> parameters) throws InconsistentInputException, ReasoningServiceException, UnsupportedTaskException {
    // Check task: this is managed directly by the endpoint
    if (task.equals(ReasoningServiceExecutor.TASK_CHECK)) {
        log.debug("Task is '{}'", ReasoningServiceExecutor.TASK_CHECK);
        try {
            boolean is = s.isConsistent(input);
            return new ReasoningServiceResult<OWLOntology>(ReasoningServiceExecutor.TASK_CHECK, is);
        } catch (ReasoningServiceException e) {
            throw e;
        }
    }
    // We get the manager from the input ontology
    // XXX We must be aware of this.
    OWLOntologyManager manager = input.getOWLOntologyManager();
    try {
        OWLOntology output = manager.createOntology();
        Set<OWLAxiom> axioms = s.runTask(task, input, rules, filtered, parameters);
        log.debug("Prepare output: {} axioms", axioms.size());
        manager.addAxioms(output, axioms);
        if (targetGraphID == null) {
            return new ReasoningServiceResult<OWLOntology>(task, true, manager.getOntology(output.getOntologyID()));
        } else {
            save(output, targetGraphID);
            return new ReasoningServiceResult<OWLOntology>(task, true);
        }
    } catch (InconsistentInputException e) {
        log.warn("The input is not consistent");
        return new ReasoningServiceResult<OWLOntology>(ReasoningServiceExecutor.TASK_CHECK, false);
    } catch (ReasoningServiceException e) {
        throw e;
    } catch (OWLOntologyCreationException e) {
        log.error("Error! \n", e);
        throw new ReasoningServiceException(new IOException(e));
    } catch (UnsupportedTaskException e) {
        log.error("Error! \n", e);
        throw e;
    } catch (Throwable t) {
        log.error("Error! \n", t);
        throw new ReasoningServiceException(t);
    }
}

Example 2 with ReasoningServiceException

use of org.apache.stanbol.reasoners.servicesapi.ReasoningServiceException in project stanbol by apache.

the class ReasoningServiceExecutor method executeJenaReasoningService.

/**
     * Execute a JenaReasoningService
     * 
     * TODO: Add parameter to decide if the output graph must be deleted if exists
     * 
     * @param s
     * @param input
     * @param rules
     * @return
     * @throws ReasoningServiceException
     * @throws UnsupportedTaskException
     */
private ReasoningServiceResult<Model> executeJenaReasoningService(String task, JenaReasoningService s, Model input, List<Rule> rules, String targetGraphID, boolean filtered, Map<String, List<String>> parameters) throws ReasoningServiceException, UnsupportedTaskException {
    // Check task: this is managed directly by the endpoint
    if (task.equals(ReasoningServiceExecutor.TASK_CHECK)) {
        log.debug("Task is '{}'", ReasoningServiceExecutor.TASK_CHECK);
        try {
            boolean is = s.isConsistent(input);
            return new ReasoningServiceResult<Model>(ReasoningServiceExecutor.TASK_CHECK, is);
        } catch (ReasoningServiceException e) {
            log.error("Error thrown: {}", e);
            throw e;
        }
    }
    try {
        Set<Statement> result = s.runTask(task, input, rules, filtered, parameters);
        if (result == null) {
            log.error("Result is null");
            throw new RuntimeException("Result is null.");
        }
        Model outputModel = ModelFactory.createDefaultModel();
        outputModel.add(result.toArray(new Statement[result.size()]));
        // If target is null, then get back results, elsewhere put it in
        // target graph
        log.debug("Prepare output");
        if (targetGraphID == null) {
            log.debug("Returning {} statements", result.size());
            return new ReasoningServiceResult<Model>(task, true, outputModel);
        } else {
            save(outputModel, targetGraphID);
            return new ReasoningServiceResult<Model>(task, true);
        }
    } catch (ReasoningServiceException e) {
        log.error("Error thrown: {}", e);
        throw e;
    } catch (InconsistentInputException e) {
        log.debug("The input is not consistent");
        return new ReasoningServiceResult<Model>(ReasoningServiceExecutor.TASK_CHECK, false);
    } catch (UnsupportedTaskException e) {
        log.error("Error thrown: {}", e);
        throw e;
    } catch (IOException e) {
        throw new ReasoningServiceException(e);
    }
}

Example 3 with ReasoningServiceException

use of org.apache.stanbol.reasoners.servicesapi.ReasoningServiceException in project stanbol by apache.

the class ReasoningServiceExecutor method execute.

/**
     * General method for execution, delegates to specific implementations.
     * 
     * @param task
     * @param service
     * @param targetGraphID
     * @param parameters
     * @return
     * @throws ReasoningServiceException
     * @throws UnsupportedTaskException
     * @throws InconsistentInputException
     */
private ReasoningServiceResult<?> execute(String task, ReasoningService<?, ?, ?> service, String targetGraphID, Map<String, List<String>> parameters) throws ReasoningServiceException, UnsupportedTaskException, InconsistentInputException {
    long start = System.currentTimeMillis();
    if (log.isDebugEnabled()) {
        log.debug(">>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>");
        log.debug("[start] Execution: {}", service.getClass().getCanonicalName());
        log.debug(">>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>>");
        log.debug("-----------------------------------------------------");
        log.debug("execute()");
        log.debug(" > task: {}", task);
        log.debug(" > service: {}", service.getClass().getCanonicalName());
        log.debug(" > target: {}", targetGraphID);
        log.debug(" > parameters:");
        for (Entry<String, List<String>> e : parameters.entrySet()) {
            log.debug(" >> {}: {}", e.getKey());
            for (String v : e.getValue()) {
                log.debug(" >>> value: {}", v);
            }
        }
        log.debug(" > input providers:");
        for (ReasoningServiceInputProvider p : inmgr.getProviders()) {
            log.debug(" >> {}", p.getClass().getCanonicalName());
        }
        log.debug("-----------------------------------------------------");
    }
    ReasoningServiceResult<?> result = null;
    /**
         * TODO Switch this into the ReasoningService implementation
         */
    if (service instanceof JenaReasoningService) {
        Model input = ModelFactory.createDefaultModel();
        synchronized (inmgr) {
            Iterator<Statement> statements = inmgr.getInputData(Statement.class);
            while (statements.hasNext()) {
                input.add(statements.next());
            }
        }
        List<Rule> rules = null;
        synchronized (inmgr) {
            Iterator<Rule> rulesI = inmgr.getInputData(Rule.class);
            while (rulesI.hasNext()) {
                Rule o = rulesI.next();
                log.debug("Rule: {}", o);
                if (rules == null) {
                    rules = new ArrayList<Rule>();
                }
                rules.add(o);
            }
        }
        if (log.isDebugEnabled()) {
            log.debug("Input size is {} statements", input.listStatements().toSet().size());
        }
        result = executeJenaReasoningService(task, (JenaReasoningService) service, input, rules, targetGraphID, true, parameters);
    } else if (service instanceof OWLApiReasoningService) {
        OWLOntology input;
        try {
            input = OWLManager.createOWLOntologyManager().createOntology();
        } catch (OWLOntologyCreationException e) {
            throw new ReasoningServiceException(e);
        }
        synchronized (inmgr) {
            Iterator<OWLAxiom> statements = inmgr.getInputData(OWLAxiom.class);
            while (statements.hasNext()) {
                input.getOWLOntologyManager().addAxiom(input, statements.next());
            }
        }
        // FIXME Please check if this is really necessary!!!
        input = input.getOWLOntologyManager().getOntology(input.getOntologyID());
        List<SWRLRule> rules = null;
        synchronized (inmgr) {
            Iterator<SWRLRule> rulesI = inmgr.getInputData(SWRLRule.class);
            while (rulesI.hasNext()) {
                if (rules == null) {
                    rules = new ArrayList<SWRLRule>();
                }
                rules.add(rulesI.next());
            }
        }
        if (log.isDebugEnabled()) {
            log.debug("Input size is {} statements", input.getAxiomCount());
        }
        result = executeOWLApiReasoningService(task, (OWLApiReasoningService) service, input, rules, targetGraphID, true, parameters);
    } else
        throw new UnsupportedOperationException("Service implementation not supported!");
    if (log.isDebugEnabled()) {
        log.debug("<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<");
        long end = System.currentTimeMillis();
        log.debug("[end] In time: {}ms", (end - start));
        log.debug("<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<<");
    }
    return result;
}

Example 4 with ReasoningServiceException

use of org.apache.stanbol.reasoners.servicesapi.ReasoningServiceException in project stanbol by apache.

the class AbstractOWLApiReasoningService method isConsistent.

/**
     * Only check consistency.
     * 
     * Subclasses may want to change how.
     * 
     * @param ontology
     * @param rules
     * @return
     * @throws ReasoningServiceException
     */
@Override
public boolean isConsistent(OWLOntology ontology, List<SWRLRule> rules) throws ReasoningServiceException {
    log.debug("Create a input ontology to merge rules in.");
    OWLOntology input;
    try {
        OWLOntologyManager manager = createOWLOntologyManager();
        input = manager.createOntology();
        Set<SWRLRule> ruleSet = new HashSet<SWRLRule>();
        ruleSet.addAll(rules);
        manager.addAxioms(input, ruleSet);
        input = manager.getOntology(input.getOntologyID());
        log.debug("Created ontology: {}", input);
        return getReasoner(ontology).isConsistent();
    } catch (OWLOntologyCreationException e) {
        log.error("An error have been thrown while attempting to create ontology. Message was: {}", e.getLocalizedMessage());
        // TODO Add explanation of this exception
        throw new ReasoningServiceException();
    }
}

Example 5 with ReasoningServiceException

use of org.apache.stanbol.reasoners.servicesapi.ReasoningServiceException in project stanbol by apache.

the class JenaReasoningServiceTest method testClassifyWithRule.

/**
     * Tests the classify(Model data, List<Rule> rules) method
     */
private void testClassifyWithRule(JenaReasoningService service) {
    log.info("Testing {}", service.getClass());
    // Prepare the rule set
    String source = "" + "\n@prefix rdf: <" + RDF.getURI() + ">." + "\n@prefix foaf: <" + TestData.FOAF_NS + ">." + "\n@prefix ex: <" + TestData.TEST_NS + ">." + "\n[rule: (?a foaf:workplaceHomepage ?w) (?w rdf:type ex:SWResearchLab) -> (?a rdf:type ex:SWResearcher)] ";
    // log.info("This is the ruleset: \n {}", source);
    List<Rule> rules = TestUtils.parseRuleStringAsFile(source);
    log.info("Loaded {} rules", rules.size());
    // Clean data
    TestData.alexdma.removeProperties();
    TestData.enridaga.removeProperties();
    Resource wphomepage = TestData.model.createResource("http://stlab.istc.cnr.it");
    Resource swResearchLab = TestData.model.createResource(TestData.TEST_NS + "SWResearchLab");
    // Prepare data
    TestData.alexdma.addProperty(TestData.foaf_workplaceHomepage, wphomepage);
    TestData.enridaga.addProperty(TestData.foaf_workplaceHomepage, wphomepage);
    wphomepage.addProperty(RDF.type, swResearchLab);
    // Setup input for the reasoner
    Model input = ModelFactory.createUnion(TestData.enridaga.getModel(), TestData.alexdma.getModel());
    input = ModelFactory.createUnion(input, wphomepage.getModel());
    input = ModelFactory.createUnion(input, TestData.foaf);
    try {
        // Run the method
        Set<Statement> inferred = service.runTask(ReasoningService.Tasks.CLASSIFY, input, rules, false, null);
        // Expected statements
        Resource swResearcher = TestData.model.createResource(TestData.TEST_NS + "SWResearcher");
        Set<Statement> expected = new HashSet<Statement>();
        expected.add(TestData.model.createStatement(TestData.alexdma, RDF.type, swResearcher));
        expected.add(TestData.model.createStatement(TestData.enridaga, RDF.type, swResearcher));
        log.info("All the expected statements must be in the inferred output");
        Set<Statement> notInOutput = TestUtils.expectedStatementsCheck(inferred, expected);
        log.info("Are all expected statements in the inferred set (true)? {}", notInOutput.isEmpty());
        if (!notInOutput.isEmpty()) {
            for (Statement bad : notInOutput) {
                log.error("The following statement is not included in the reasoner output: {}", bad);
            }
        }
        assertTrue(notInOutput.isEmpty());
        // There must be only rdf:type output
        boolean onlyRdf = true;
        for (Statement stat : inferred) {
            // Here we want only rdf:type statements
            if (!stat.getPredicate().equals(RDF.type)) {
                log.error("This statement is not rdf:type: {}", stat);
            }
            if (!stat.getPredicate().equals(RDF.type)) {
                onlyRdf = false;
            }
        }
        log.info("Check for statements to be rdf:type only (true): {}", onlyRdf);
        assertTrue(onlyRdf);
    } catch (ReasoningServiceException e) {
        log.error("Error thrown: {}", e);
        assertTrue(false);
    } catch (InconsistentInputException e) {
        log.error("Error thrown: {}", e);
        assertTrue(false);
    } catch (UnsupportedTaskException e) {
        log.error("Error thrown: {}", e);
        assertTrue(false);
    }
    // Clean data
    TestData.alexdma.removeProperties();
    TestData.enridaga.removeProperties();
}