Examples with CM org.apache.sysml.runtime.functionobjects.CM used on opensource projects

Example 11 with CM

use of org.apache.sysml.runtime.functionobjects.CM in project incubator-systemml by apache.

the class PerformGroupByAggInReducer method call.

@Override
public WeightedCell call(Iterable<WeightedCell> kv) throws Exception {
    WeightedCell outCell = new WeightedCell();
    CM_COV_Object cmObj = new CM_COV_Object();
    if (// everything except sum
    op instanceof CMOperator) {
        cmObj.reset();
        // cmFn.get(key.getTag());
        CM lcmFn = CM.getCMFnObject(((CMOperator) op).aggOpType);
        if (((CMOperator) op).isPartialAggregateOperator()) {
            throw new DMLRuntimeException("Incorrect usage, should have used PerformGroupByAggInCombiner");
        } else // forward tuples to reducer
        {
            for (WeightedCell value : kv) lcmFn.execute(cmObj, value.getValue(), value.getWeight());
            outCell.setValue(cmObj.getRequiredResult(op));
            outCell.setWeight(1);
        }
    } else if (// sum
    op instanceof AggregateOperator) {
        AggregateOperator aggop = (AggregateOperator) op;
        if (aggop.correctionExists) {
            KahanObject buffer = new KahanObject(aggop.initialValue, 0);
            KahanPlus.getKahanPlusFnObject();
            // partial aggregate with correction
            for (WeightedCell value : kv) aggop.increOp.fn.execute(buffer, value.getValue() * value.getWeight());
            outCell.setValue(buffer._sum);
            outCell.setWeight(1);
        } else // no correction
        {
            double v = aggop.initialValue;
            // partial aggregate without correction
            for (WeightedCell value : kv) v = aggop.increOp.fn.execute(v, value.getValue() * value.getWeight());
            outCell.setValue(v);
            outCell.setWeight(1);
        }
    } else
        throw new DMLRuntimeException("Unsupported operator in grouped aggregate instruction:" + op);
    return outCell;
}

Example 12 with CM

use of org.apache.sysml.runtime.functionobjects.CM in project incubator-systemml by apache.

the class LibMatrixAgg method getAggType.

private static AggType getAggType(AggregateUnaryOperator op) {
    ValueFunction vfn = op.aggOp.increOp.fn;
    IndexFunction ifn = op.indexFn;
    // (kahan) sum / sum squared / trace (for ReduceDiag)
    if (vfn instanceof KahanFunction && (op.aggOp.correctionLocation == CorrectionLocationType.LASTCOLUMN || op.aggOp.correctionLocation == CorrectionLocationType.LASTROW) && (ifn instanceof ReduceAll || ifn instanceof ReduceCol || ifn instanceof ReduceRow || ifn instanceof ReduceDiag)) {
        if (vfn instanceof KahanPlus)
            return AggType.KAHAN_SUM;
        else if (vfn instanceof KahanPlusSq)
            return AggType.KAHAN_SUM_SQ;
    }
    // mean
    if (vfn instanceof Mean && (op.aggOp.correctionLocation == CorrectionLocationType.LASTTWOCOLUMNS || op.aggOp.correctionLocation == CorrectionLocationType.LASTTWOROWS) && (ifn instanceof ReduceAll || ifn instanceof ReduceCol || ifn instanceof ReduceRow)) {
        return AggType.MEAN;
    }
    // variance
    if (vfn instanceof CM && ((CM) vfn).getAggOpType() == AggregateOperationTypes.VARIANCE && (op.aggOp.correctionLocation == CorrectionLocationType.LASTFOURCOLUMNS || op.aggOp.correctionLocation == CorrectionLocationType.LASTFOURROWS) && (ifn instanceof ReduceAll || ifn instanceof ReduceCol || ifn instanceof ReduceRow)) {
        return AggType.VAR;
    }
    // prod
    if (vfn instanceof Multiply && ifn instanceof ReduceAll) {
        return AggType.PROD;
    }
    // min / max
    if (vfn instanceof Builtin && (ifn instanceof ReduceAll || ifn instanceof ReduceCol || ifn instanceof ReduceRow)) {
        BuiltinCode bfcode = ((Builtin) vfn).bFunc;
        switch(bfcode) {
            case MAX:
                return AggType.MAX;
            case MIN:
                return AggType.MIN;
            case MAXINDEX:
                return AggType.MAX_INDEX;
            case MININDEX:
                return AggType.MIN_INDEX;
            // do nothing
            default:
        }
    }
    return AggType.INVALID;
}

Example 13 with CM

use of org.apache.sysml.runtime.functionobjects.CM in project incubator-systemml by apache.

the class MatrixBlock method incrementalAggregate.

@Override
public void incrementalAggregate(AggregateOperator aggOp, MatrixValue newWithCorrection) {
    // assert(aggOp.correctionExists);
    MatrixBlock newWithCor = checkType(newWithCorrection);
    KahanObject buffer = new KahanObject(0, 0);
    if (aggOp.correctionLocation == CorrectionLocationType.LASTROW) {
        if (aggOp.increOp.fn instanceof KahanPlus) {
            LibMatrixAgg.aggregateBinaryMatrix(newWithCor, this, aggOp);
        } else {
            for (int r = 0; r < rlen - 1; r++) for (int c = 0; c < clen; c++) {
                buffer._sum = this.quickGetValue(r, c);
                buffer._correction = this.quickGetValue(r + 1, c);
                buffer = (KahanObject) aggOp.increOp.fn.execute(buffer, newWithCor.quickGetValue(r, c), newWithCor.quickGetValue(r + 1, c));
                quickSetValue(r, c, buffer._sum);
                quickSetValue(r + 1, c, buffer._correction);
            }
        }
    } else if (aggOp.correctionLocation == CorrectionLocationType.LASTCOLUMN) {
        if (aggOp.increOp.fn instanceof Builtin && (((Builtin) (aggOp.increOp.fn)).bFunc == Builtin.BuiltinCode.MAXINDEX || ((Builtin) (aggOp.increOp.fn)).bFunc == Builtin.BuiltinCode.MININDEX)) {
            // modified, the other needs to be changed to match.
            for (int r = 0; r < rlen; r++) {
                double currMaxValue = quickGetValue(r, 1);
                long newMaxIndex = (long) newWithCor.quickGetValue(r, 0);
                double newMaxValue = newWithCor.quickGetValue(r, 1);
                double update = aggOp.increOp.fn.execute(newMaxValue, currMaxValue);
                if (2.0 == update) {
                    // Return value of 2 ==> both values the same, break ties
                    // in favor of higher index.
                    long curMaxIndex = (long) quickGetValue(r, 0);
                    quickSetValue(r, 0, Math.max(curMaxIndex, newMaxIndex));
                } else if (1.0 == update) {
                    // Return value of 1 ==> new value is better; use its index
                    quickSetValue(r, 0, newMaxIndex);
                    quickSetValue(r, 1, newMaxValue);
                } else {
                // Other return value ==> current answer is best
                }
            }
        // *** END HACK ***
        } else {
            if (aggOp.increOp.fn instanceof KahanPlus) {
                LibMatrixAgg.aggregateBinaryMatrix(newWithCor, this, aggOp);
            } else {
                for (int r = 0; r < rlen; r++) for (int c = 0; c < clen - 1; c++) {
                    buffer._sum = this.quickGetValue(r, c);
                    buffer._correction = this.quickGetValue(r, c + 1);
                    buffer = (KahanObject) aggOp.increOp.fn.execute(buffer, newWithCor.quickGetValue(r, c), newWithCor.quickGetValue(r, c + 1));
                    quickSetValue(r, c, buffer._sum);
                    quickSetValue(r, c + 1, buffer._correction);
                }
            }
        }
    } else if (aggOp.correctionLocation == CorrectionLocationType.LASTTWOROWS) {
        double n, n2, mu2;
        for (int r = 0; r < rlen - 2; r++) for (int c = 0; c < clen; c++) {
            buffer._sum = this.quickGetValue(r, c);
            n = this.quickGetValue(r + 1, c);
            buffer._correction = this.quickGetValue(r + 2, c);
            mu2 = newWithCor.quickGetValue(r, c);
            n2 = newWithCor.quickGetValue(r + 1, c);
            n = n + n2;
            double toadd = (mu2 - buffer._sum) * n2 / n;
            buffer = (KahanObject) aggOp.increOp.fn.execute(buffer, toadd);
            quickSetValue(r, c, buffer._sum);
            quickSetValue(r + 1, c, n);
            quickSetValue(r + 2, c, buffer._correction);
        }
    } else if (aggOp.correctionLocation == CorrectionLocationType.LASTTWOCOLUMNS) {
        double n, n2, mu2;
        for (int r = 0; r < rlen; r++) for (int c = 0; c < clen - 2; c++) {
            buffer._sum = this.quickGetValue(r, c);
            n = this.quickGetValue(r, c + 1);
            buffer._correction = this.quickGetValue(r, c + 2);
            mu2 = newWithCor.quickGetValue(r, c);
            n2 = newWithCor.quickGetValue(r, c + 1);
            n = n + n2;
            double toadd = (mu2 - buffer._sum) * n2 / n;
            buffer = (KahanObject) aggOp.increOp.fn.execute(buffer, toadd);
            quickSetValue(r, c, buffer._sum);
            quickSetValue(r, c + 1, n);
            quickSetValue(r, c + 2, buffer._correction);
        }
    } else if (aggOp.correctionLocation == CorrectionLocationType.LASTFOURROWS && aggOp.increOp.fn instanceof CM && ((CM) aggOp.increOp.fn).getAggOpType() == AggregateOperationTypes.VARIANCE) {
        // create buffers to store results
        CM_COV_Object cbuff_curr = new CM_COV_Object();
        CM_COV_Object cbuff_part = new CM_COV_Object();
        // perform incremental aggregation
        for (int r = 0; r < rlen - 4; r++) for (int c = 0; c < clen; c++) {
            // extract current values: { var | mean, count, m2 correction, mean correction }
            // note: m2 = var * (n - 1)
            // count
            cbuff_curr.w = quickGetValue(r + 2, c);
            // m2
            cbuff_curr.m2._sum = quickGetValue(r, c) * (cbuff_curr.w - 1);
            // mean
            cbuff_curr.mean._sum = quickGetValue(r + 1, c);
            cbuff_curr.m2._correction = quickGetValue(r + 3, c);
            cbuff_curr.mean._correction = quickGetValue(r + 4, c);
            // extract partial values: { var | mean, count, m2 correction, mean correction }
            // note: m2 = var * (n - 1)
            // count
            cbuff_part.w = newWithCor.quickGetValue(r + 2, c);
            // m2
            cbuff_part.m2._sum = newWithCor.quickGetValue(r, c) * (cbuff_part.w - 1);
            // mean
            cbuff_part.mean._sum = newWithCor.quickGetValue(r + 1, c);
            cbuff_part.m2._correction = newWithCor.quickGetValue(r + 3, c);
            cbuff_part.mean._correction = newWithCor.quickGetValue(r + 4, c);
            // calculate incremental aggregated variance
            cbuff_curr = (CM_COV_Object) aggOp.increOp.fn.execute(cbuff_curr, cbuff_part);
            // store updated values: { var | mean, count, m2 correction, mean correction }
            double var = cbuff_curr.getRequiredResult(AggregateOperationTypes.VARIANCE);
            quickSetValue(r, c, var);
            // mean
            quickSetValue(r + 1, c, cbuff_curr.mean._sum);
            // count
            quickSetValue(r + 2, c, cbuff_curr.w);
            quickSetValue(r + 3, c, cbuff_curr.m2._correction);
            quickSetValue(r + 4, c, cbuff_curr.mean._correction);
        }
    } else if (aggOp.correctionLocation == CorrectionLocationType.LASTFOURCOLUMNS && aggOp.increOp.fn instanceof CM && ((CM) aggOp.increOp.fn).getAggOpType() == AggregateOperationTypes.VARIANCE) {
        // create buffers to store results
        CM_COV_Object cbuff_curr = new CM_COV_Object();
        CM_COV_Object cbuff_part = new CM_COV_Object();
        // perform incremental aggregation
        for (int r = 0; r < rlen; r++) for (int c = 0; c < clen - 4; c++) {
            // extract current values: { var | mean, count, m2 correction, mean correction }
            // note: m2 = var * (n - 1)
            // count
            cbuff_curr.w = quickGetValue(r, c + 2);
            // m2
            cbuff_curr.m2._sum = quickGetValue(r, c) * (cbuff_curr.w - 1);
            // mean
            cbuff_curr.mean._sum = quickGetValue(r, c + 1);
            cbuff_curr.m2._correction = quickGetValue(r, c + 3);
            cbuff_curr.mean._correction = quickGetValue(r, c + 4);
            // extract partial values: { var | mean, count, m2 correction, mean correction }
            // note: m2 = var * (n - 1)
            // count
            cbuff_part.w = newWithCor.quickGetValue(r, c + 2);
            // m2
            cbuff_part.m2._sum = newWithCor.quickGetValue(r, c) * (cbuff_part.w - 1);
            // mean
            cbuff_part.mean._sum = newWithCor.quickGetValue(r, c + 1);
            cbuff_part.m2._correction = newWithCor.quickGetValue(r, c + 3);
            cbuff_part.mean._correction = newWithCor.quickGetValue(r, c + 4);
            // calculate incremental aggregated variance
            cbuff_curr = (CM_COV_Object) aggOp.increOp.fn.execute(cbuff_curr, cbuff_part);
            // store updated values: { var | mean, count, m2 correction, mean correction }
            double var = cbuff_curr.getRequiredResult(AggregateOperationTypes.VARIANCE);
            quickSetValue(r, c, var);
            // mean
            quickSetValue(r, c + 1, cbuff_curr.mean._sum);
            // count
            quickSetValue(r, c + 2, cbuff_curr.w);
            quickSetValue(r, c + 3, cbuff_curr.m2._correction);
            quickSetValue(r, c + 4, cbuff_curr.mean._correction);
        }
    } else
        throw new DMLRuntimeException("unrecognized correctionLocation: " + aggOp.correctionLocation);
}

Example 14 with CM

use of org.apache.sysml.runtime.functionobjects.CM in project incubator-systemml by apache.

the class CMCOVMRMapper method specialOperationsForActualMap.

@Override
protected void specialOperationsForActualMap(int index, OutputCollector<Writable, Writable> out, Reporter reporter) throws IOException {
    // apply all instructions
    processMapperInstructionsForMatrix(index);
    for (byte tag : cmTags) {
        CM lcmFn = cmFn.get(tag);
        IndexedMatrixValue input = cachedValues.getFirst(tag);
        if (input == null)
            continue;
        WeightedPair inputPair = (WeightedPair) input.getValue();
        CM_N_COVCell cmValue = (CM_N_COVCell) cmNcovCache.getFirst(tag).getValue();
        try {
            lcmFn.execute(cmValue.getCM_N_COVObject(), inputPair.getValue(), inputPair.getWeight());
        } catch (DMLRuntimeException e) {
            throw new IOException(e);
        }
    }
    for (byte tag : covTags) {
        IndexedMatrixValue input = cachedValues.getFirst(tag);
        if (input == null)
            continue;
        WeightedPair inputPair = (WeightedPair) input.getValue();
        CM_N_COVCell comValue = (CM_N_COVCell) cmNcovCache.getFirst(tag).getValue();
        try {
            covFn.execute(comValue.getCM_N_COVObject(), inputPair.getValue(), inputPair.getOtherValue(), inputPair.getWeight());
        } catch (DMLRuntimeException e) {
            throw new IOException(e);
        }
    }
}