Examples with CellIndex org.apache.sysml.runtime.matrix.data.MatrixValue.CellIndex used on opensource projects

Example 81 with CellIndex

use of org.apache.sysml.runtime.matrix.data.MatrixValue.CellIndex in project incubator-systemml by apache.

the class TransformFrameEncodeApplySubsetTest method runTransformTest.

/**
 * @param rt
 * @param ofmt
 * @param dataset
 */
private void runTransformTest(String testname, RUNTIME_PLATFORM rt, String ofmt, boolean colnames) {
    // set runtime platform
    RUNTIME_PLATFORM rtold = rtplatform;
    rtplatform = rt;
    boolean sparkConfigOld = DMLScript.USE_LOCAL_SPARK_CONFIG;
    if (rtplatform == RUNTIME_PLATFORM.SPARK || rtplatform == RUNTIME_PLATFORM.HYBRID_SPARK)
        DMLScript.USE_LOCAL_SPARK_CONFIG = true;
    if (!ofmt.equals("csv"))
        throw new RuntimeException("Unsupported test output format");
    try {
        getAndLoadTestConfiguration(testname);
        String HOME = SCRIPT_DIR + TEST_DIR;
        fullDMLScriptName = HOME + testname + ".dml";
        programArgs = new String[] { "-explain", "recompile_hops", "-args", HOME + "input/" + DATASET1, output("R") };
        runTest(true, false, null, -1);
        // check output
        Assert.assertEquals(Double.valueOf(148), readDMLMatrixFromHDFS("R").get(new CellIndex(1, 1)));
    } finally {
        rtplatform = rtold;
        DMLScript.USE_LOCAL_SPARK_CONFIG = sparkConfigOld;
    }
}

Example 82 with CellIndex

use of org.apache.sysml.runtime.matrix.data.MatrixValue.CellIndex in project incubator-systemml by apache.

the class CholeskyTest method runTestCholesky.

private void runTestCholesky(int rows, int cols, RUNTIME_PLATFORM rt) {
    RUNTIME_PLATFORM rtold = rtplatform;
    rtplatform = rt;
    boolean sparkConfigOld = DMLScript.USE_LOCAL_SPARK_CONFIG;
    if (rtplatform == RUNTIME_PLATFORM.SPARK)
        DMLScript.USE_LOCAL_SPARK_CONFIG = true;
    try {
        getAndLoadTestConfiguration(TEST_NAME);
        String HOME = SCRIPT_DIR + TEST_DIR;
        fullDMLScriptName = HOME + TEST_NAME + ".dml";
        programArgs = new String[] { "-args", input("A"), output("D") };
        double[][] A = getRandomMatrix(rows, cols, 0, 1, sparsity, 10);
        MatrixCharacteristics mc = new MatrixCharacteristics(rows, cols, -1, -1, -1);
        writeInputMatrixWithMTD("A", A, false, mc);
        // run tests and compare results
        runTest(true, false, null, -1);
        Assert.assertEquals(0, readDMLMatrixFromHDFS("D").get(new CellIndex(1, 1)), 1e-5);
    } finally {
        DMLScript.USE_LOCAL_SPARK_CONFIG = sparkConfigOld;
        rtplatform = rtold;
    }
}

Example 83 with CellIndex

use of org.apache.sysml.runtime.matrix.data.MatrixValue.CellIndex in project incubator-systemml by apache.

the class FullCumminTest method runColAggregateOperationTest.

/**
 * @param sparseM1
 * @param sparseM2
 * @param instType
 */
private void runColAggregateOperationTest(InputType type, boolean sparse, ExecType instType, boolean rewrites) {
    RUNTIME_PLATFORM platformOld = rtplatform;
    switch(instType) {
        case MR:
            rtplatform = RUNTIME_PLATFORM.HADOOP;
            break;
        case SPARK:
            rtplatform = RUNTIME_PLATFORM.SPARK;
            break;
        default:
            rtplatform = RUNTIME_PLATFORM.HYBRID;
            break;
    }
    boolean sparkConfigOld = DMLScript.USE_LOCAL_SPARK_CONFIG;
    if (rtplatform == RUNTIME_PLATFORM.SPARK)
        DMLScript.USE_LOCAL_SPARK_CONFIG = true;
    // rewrites
    boolean oldFlagRewrites = OptimizerUtils.ALLOW_ALGEBRAIC_SIMPLIFICATION;
    OptimizerUtils.ALLOW_ALGEBRAIC_SIMPLIFICATION = rewrites;
    try {
        int cols = (type == InputType.COL_VECTOR) ? 1 : colsMatrix;
        int rows = (type == InputType.ROW_VECTOR) ? 1 : rowsMatrix;
        double sparsity = (sparse) ? spSparse : spDense;
        String TEST_CACHE_DIR = "";
        if (TEST_CACHE_ENABLED) {
            TEST_CACHE_DIR = type.ordinal() + "_" + sparsity + "/";
        }
        TestConfiguration config = getTestConfiguration(TEST_NAME);
        loadTestConfiguration(config, TEST_CACHE_DIR);
        // This is for running the junit test the new way, i.e., construct the arguments directly
        String HOME = SCRIPT_DIR + TEST_DIR;
        fullDMLScriptName = HOME + TEST_NAME + ".dml";
        programArgs = new String[] { "-explain", "-args", input("A"), output("B") };
        fullRScriptName = HOME + TEST_NAME + ".R";
        rCmd = "Rscript" + " " + fullRScriptName + " " + inputDir() + " " + expectedDir();
        // generate actual dataset
        double[][] A = getRandomMatrix(rows, cols, -0.05, 1, sparsity, 7);
        writeInputMatrixWithMTD("A", A, true);
        runTest(true, false, null, -1);
        if (// in CP no MR jobs should be executed
        instType == ExecType.CP || instType == ExecType.SPARK)
            Assert.assertEquals("Unexpected number of executed MR jobs.", 0, Statistics.getNoOfExecutedMRJobs());
        runRScript(true);
        // compare matrices
        HashMap<CellIndex, Double> dmlfile = readDMLMatrixFromHDFS("B");
        HashMap<CellIndex, Double> rfile = readRMatrixFromFS("B");
        TestUtils.compareMatrices(dmlfile, rfile, eps, "Stat-DML", "Stat-R");
    } finally {
        rtplatform = platformOld;
        DMLScript.USE_LOCAL_SPARK_CONFIG = sparkConfigOld;
        OptimizerUtils.ALLOW_ALGEBRAIC_SIMPLIFICATION = oldFlagRewrites;
    }
}

Example 84 with CellIndex

use of org.apache.sysml.runtime.matrix.data.MatrixValue.CellIndex in project incubator-systemml by apache.

the class FullCumprodTest method runColAggregateOperationTest.

/**
 * @param sparseM1
 * @param sparseM2
 * @param instType
 */
private void runColAggregateOperationTest(InputType type, boolean sparse, ExecType instType, boolean rewrites) {
    RUNTIME_PLATFORM platformOld = rtplatform;
    switch(instType) {
        case MR:
            rtplatform = RUNTIME_PLATFORM.HADOOP;
            break;
        case SPARK:
            rtplatform = RUNTIME_PLATFORM.SPARK;
            break;
        default:
            rtplatform = RUNTIME_PLATFORM.HYBRID;
            break;
    }
    boolean sparkConfigOld = DMLScript.USE_LOCAL_SPARK_CONFIG;
    if (rtplatform == RUNTIME_PLATFORM.SPARK)
        DMLScript.USE_LOCAL_SPARK_CONFIG = true;
    // rewrites
    boolean oldFlagRewrites = OptimizerUtils.ALLOW_ALGEBRAIC_SIMPLIFICATION;
    OptimizerUtils.ALLOW_ALGEBRAIC_SIMPLIFICATION = rewrites;
    try {
        int cols = (type == InputType.COL_VECTOR) ? 1 : colsMatrix;
        int rows = (type == InputType.ROW_VECTOR) ? 1 : rowsMatrix;
        double sparsity = (sparse) ? spSparse : spDense;
        String TEST_CACHE_DIR = "";
        if (TEST_CACHE_ENABLED) {
            TEST_CACHE_DIR = type.ordinal() + "_" + sparsity + "/";
        }
        TestConfiguration config = getTestConfiguration(TEST_NAME);
        loadTestConfiguration(config, TEST_CACHE_DIR);
        // This is for running the junit test the new way, i.e., construct the arguments directly
        String HOME = SCRIPT_DIR + TEST_DIR;
        fullDMLScriptName = HOME + TEST_NAME + ".dml";
        programArgs = new String[] { "-explain", "-args", input("A"), output("B") };
        fullRScriptName = HOME + TEST_NAME + ".R";
        rCmd = "Rscript" + " " + fullRScriptName + " " + inputDir() + " " + expectedDir();
        // generate actual dataset
        double[][] A = getRandomMatrix(rows, cols, 0.99, 1, sparsity, 7);
        writeInputMatrixWithMTD("A", A, true);
        runTest(true, false, null, -1);
        if (// in CP no MR jobs should be executed
        instType == ExecType.CP || instType == ExecType.SPARK)
            Assert.assertEquals("Unexpected number of executed MR jobs.", 0, Statistics.getNoOfExecutedMRJobs());
        runRScript(true);
        // compare matrices
        HashMap<CellIndex, Double> dmlfile = readDMLMatrixFromHDFS("B");
        HashMap<CellIndex, Double> rfile = readRMatrixFromFS("B");
        TestUtils.compareMatrices(dmlfile, rfile, eps, "Stat-DML", "Stat-R");
    } finally {
        rtplatform = platformOld;
        DMLScript.USE_LOCAL_SPARK_CONFIG = sparkConfigOld;
        OptimizerUtils.ALLOW_ALGEBRAIC_SIMPLIFICATION = oldFlagRewrites;
    }
}

Example 85 with CellIndex

use of org.apache.sysml.runtime.matrix.data.MatrixValue.CellIndex in project incubator-systemml by apache.

the class FullCumsumTest method runColAggregateOperationTest.

/**
 * @param sparseM1
 * @param sparseM2
 * @param instType
 */
private void runColAggregateOperationTest(InputType type, boolean sparse, ExecType instType, boolean rewrites) {
    RUNTIME_PLATFORM platformOld = rtplatform;
    switch(instType) {
        case MR:
            rtplatform = RUNTIME_PLATFORM.HADOOP;
            break;
        case SPARK:
            rtplatform = RUNTIME_PLATFORM.SPARK;
            break;
        default:
            rtplatform = RUNTIME_PLATFORM.HYBRID;
            break;
    }
    boolean sparkConfigOld = DMLScript.USE_LOCAL_SPARK_CONFIG;
    if (rtplatform == RUNTIME_PLATFORM.SPARK)
        DMLScript.USE_LOCAL_SPARK_CONFIG = true;
    // rewrites
    boolean oldFlagRewrites = OptimizerUtils.ALLOW_ALGEBRAIC_SIMPLIFICATION;
    OptimizerUtils.ALLOW_ALGEBRAIC_SIMPLIFICATION = rewrites;
    try {
        int cols = (type == InputType.COL_VECTOR) ? 1 : colsMatrix;
        int rows = (type == InputType.ROW_VECTOR) ? 1 : rowsMatrix;
        double sparsity = (sparse) ? spSparse : spDense;
        String TEST_CACHE_DIR = "";
        if (TEST_CACHE_ENABLED) {
            TEST_CACHE_DIR = type.ordinal() + "_" + sparsity + "/";
        }
        TestConfiguration config = getTestConfiguration(TEST_NAME);
        loadTestConfiguration(config, TEST_CACHE_DIR);
        // This is for running the junit test the new way, i.e., construct the arguments directly
        String HOME = SCRIPT_DIR + TEST_DIR;
        fullDMLScriptName = HOME + TEST_NAME + ".dml";
        programArgs = new String[] { "-explain", "-args", input("A"), output("B") };
        fullRScriptName = HOME + TEST_NAME + ".R";
        rCmd = "Rscript" + " " + fullRScriptName + " " + inputDir() + " " + expectedDir();
        // generate actual dataset
        double[][] A = getRandomMatrix(rows, cols, -0.05, 1, sparsity, 7);
        writeInputMatrixWithMTD("A", A, true);
        runTest(true, false, null, -1);
        if (// in CP no MR jobs should be executed
        instType == ExecType.CP || instType == ExecType.SPARK)
            Assert.assertEquals("Unexpected number of executed MR jobs.", 0, Statistics.getNoOfExecutedMRJobs());
        runRScript(true);
        // compare matrices
        HashMap<CellIndex, Double> dmlfile = readDMLMatrixFromHDFS("B");
        HashMap<CellIndex, Double> rfile = readRMatrixFromFS("B");
        TestUtils.compareMatrices(dmlfile, rfile, eps, "Stat-DML", "Stat-R");
    } finally {
        rtplatform = platformOld;
        DMLScript.USE_LOCAL_SPARK_CONFIG = sparkConfigOld;
        OptimizerUtils.ALLOW_ALGEBRAIC_SIMPLIFICATION = oldFlagRewrites;
    }
}