Examples with StringInputStream org.apache.tools.ant.filters.StringInputStream used on opensource projects

Example 1 with StringInputStream

use of org.apache.tools.ant.filters.StringInputStream in project OpenGrok by OpenGrok.

the class RuntimeEnvironmentTest method testLoadInvalidStatistics.

@Test(expected = ParseException.class)
public void testLoadInvalidStatistics() throws ParseException, IOException {
    RuntimeEnvironment env = RuntimeEnvironment.getInstance();
    String json = "{ malformed json with missing bracket";
    try (InputStream in = new StringInputStream(json)) {
        env.loadStatistics(in);
    }
}

Example 2 with StringInputStream

use of org.apache.tools.ant.filters.StringInputStream in project OpenGrok by OpenGrok.

the class RuntimeEnvironmentTest method testLoadEmptyStatistics.

@Test
public void testLoadEmptyStatistics() throws IOException, ParseException {
    RuntimeEnvironment env = RuntimeEnvironment.getInstance();
    String json = "{}";
    try (InputStream in = new StringInputStream(json)) {
        env.loadStatistics(in);
    }
    Assert.assertEquals(new Statistics().toJson(), env.getStatistics().toJson());
}

Example 3 with StringInputStream

use of org.apache.tools.ant.filters.StringInputStream in project jbosstools-hibernate by jbosstools.

the class CoreMappingTestHelper method createCfgXMLFile.

private void createCfgXMLFile(String packageName) throws Exception {
    IPath cfgFilePath = new Path(TestProject.SRC_FOLDER + File.separator + ConsoleConfigUtils.CFG_FILE_NAME);
    IFile cfgFile = testProject.getIProject().getFile(cfgFilePath);
    String cfgXmlString = CfgXmlFileHelper.constructCfgXmlString(packageName, testProject.getIProject());
    cfgFile.create(new StringInputStream(cfgXmlString), true, null);
}

Example 4 with StringInputStream

use of org.apache.tools.ant.filters.StringInputStream in project jbosstools-hibernate by jbosstools.

the class MappingTestHelper method createCfgXMLFile.

private void createCfgXMLFile() throws Exception {
    IPath cfgFilePath = new Path(TestProject.SRC_FOLDER + File.separator + ConsoleConfigUtils.CFG_FILE_NAME);
    IFile cfgFile = testProject.getIProject().getFile(cfgFilePath);
    cfgFile.create(new StringInputStream(cfgXml), true, null);
}

Example 5 with StringInputStream

use of org.apache.tools.ant.filters.StringInputStream in project Gemma by PavlidisLab.

the class DatasetCombiner method findGDSforGSE.

/**
 * @param seriesAccession series accession
 * @return GDSs that correspond to the given series. It will be empty if there is no GDS matching.
 */
public static Collection<String> findGDSforGSE(String seriesAccession) {
    Collection<String> associatedDatasetAccessions = new HashSet<>();
    try {
        String details = EutilFetch.fetch("gds", seriesAccession, 100);
        if (details.equalsIgnoreCase("no results")) {
            return associatedDatasetAccessions;
        }
        XPathFactory xf = XPathFactory.newInstance();
        XPath xpath = xf.newXPath();
        /*
             * Get all Items of type GDS that are from a DocSum with an Item entryType of GDS.
             */
        XPathExpression xgds = xpath.compile("/eSummaryResult/DocSum[Item/@Name=\"entryType\" and (Item=\"GDS\")]/Item[@Name=\"GDS\"][1]/text()");
        DocumentBuilder builder = DatasetCombiner.factory.newDocumentBuilder();
        /*
             * Bug 2690. There must be a better way.
             */
        details = details.replaceAll("encoding=\"UTF-8\"", "");
        try (StringInputStream sis = new StringInputStream(StringUtils.trim(details))) {
            Document document = builder.parse(sis);
            NodeList result = (NodeList) xgds.evaluate(document, XPathConstants.NODESET);
            for (int i = 0; i < result.getLength(); i++) {
                String nodeValue = result.item(i).getNodeValue();
                // if ( nodeValue.contains( ";" ) ) continue; //
                associatedDatasetAccessions.add("GDS" + nodeValue);
            }
            return associatedDatasetAccessions;
        }
    } catch (IOException e) {
        throw new RuntimeException("Could not parse XML data from remote server", e);
    } catch (ParserConfigurationException | SAXException | XPathExpressionException e) {
        throw new RuntimeException("XML parsing error of remote data", e);
    }
}