Examples with EMViewControlPanel org.baderlab.csplugins.enrichmentmap.view.control.ControlPanel.EMViewControlPanel used on opensource projects

Example 1 with EMViewControlPanel

use of org.baderlab.csplugins.enrichmentmap.view.control.ControlPanel.EMViewControlPanel in project EnrichmentMapApp by BaderLab.

the class ControlPanelMediator method handleEvent.

@Override
public void handleEvent(SetCurrentNetworkViewEvent e) {
    if (getControlPanel().isDisplayable())
        setCurrentNetworkView(e.getNetworkView());
    invokeOnEDT(() -> {
        EMViewControlPanel viewPanel = getControlPanel().getViewControlPanel(e.getNetworkView());
        updateLegends(viewPanel);
    });
}

Example 2 with EMViewControlPanel

use of org.baderlab.csplugins.enrichmentmap.view.control.ControlPanel.EMViewControlPanel in project EnrichmentMapApp by BaderLab.

the class ControlPanelMediator method applyVisualStyle.

private void applyVisualStyle(EMStyleOptions options, CyCustomGraphics2<?> chart, boolean updateChartOnly) {
    ApplyEMStyleTask task = applyStyleTaskFactory.create(options, chart, updateChartOnly);
    dialogTaskManager.execute(new TaskIterator(task), new TaskObserver() {

        @Override
        public void taskFinished(ObservableTask task) {
        }

        @Override
        public void allFinished(FinishStatus finishStatus) {
            EMViewControlPanel viewPanel = getControlPanel().getViewControlPanel(options.getNetworkView());
            updateLegends(viewPanel);
        }
    });
}

Example 3 with EMViewControlPanel

use of org.baderlab.csplugins.enrichmentmap.view.control.ControlPanel.EMViewControlPanel in project EnrichmentMapApp by BaderLab.

the class ControlPanelMediator method reset.

public void reset(ViewParams params) {
    long netViewID = params.getNetworkViewID();
    invokeOnEDT(() -> {
        EMViewControlPanel viewPanel = getControlPanel().getViewControlPanel(netViewID);
        if (viewPanel == null)
            return;
        EnrichmentMap map = emManager.getEnrichmentMap(viewPanel.getNetworkView().getModel().getSUID());
        if (map == null)
            return;
        try {
            // Update Filters
            if (params.getPValue() != null && viewPanel.getPValueSliderPanel() != null)
                viewPanel.getPValueSliderPanel().setValue(params.getPValue());
            if (params.getQValue() != null && viewPanel.getQValueSliderPanel() != null)
                viewPanel.getQValueSliderPanel().setValue(params.getQValue());
            if (params.getSimilarityCoefficient() != null && viewPanel.getSimilaritySliderPanel() != null)
                viewPanel.getSimilaritySliderPanel().setValue(params.getSimilarityCoefficient());
            if (params.getNodeCutoffParam() == CutoffParam.P_VALUE)
                viewPanel.getPValueRadio().doClick();
            else if (params.getNodeCutoffParam() == CutoffParam.Q_VALUE)
                viewPanel.getQValueRadio().doClick();
            Set<String> filteredOutDataSetNames = params.getFilteredOutDataSets();
            if (filteredOutDataSetNames != null && !filteredOutDataSetNames.isEmpty()) {
                Set<AbstractDataSet> allDataSets = viewPanel.getAllDataSets();
                Set<AbstractDataSet> filteredDataSets = allDataSets.stream().filter(ds -> !filteredOutDataSetNames.contains(ds.getName())).collect(Collectors.toSet());
                viewPanel.getDataSetSelector().setCheckedItems(filteredDataSets);
            }
            // Update Style options
            ChartOptions chartOptions = params.getChartOptions();
            viewPanel.getChartDataCombo().setSelectedItem(chartOptions != null ? chartOptions.getData() : null);
            viewPanel.getChartTypeCombo().setSelectedItem(chartOptions != null ? chartOptions.getType() : null);
            viewPanel.getChartColorsCombo().setSelectedItem(chartOptions != null ? chartOptions.getColorScheme() : null);
            viewPanel.getShowChartLabelsCheck().setSelected(chartOptions != null && chartOptions.isShowLabels());
            viewPanel.getPublicationReadyCheck().setSelected(params.isPublicationReady());
            viewPanel.updateChartDataCombo();
            updateVisualStyle(map, viewPanel);
            filterNodesAndEdges(viewPanel, map);
        } finally {
            updating = false;
        }
    });
}

Example 4 with EMViewControlPanel

use of org.baderlab.csplugins.enrichmentmap.view.control.ControlPanel.EMViewControlPanel in project EnrichmentMapApp by BaderLab.

the class ControlPanelMediator method updateDataSetList.

public void updateDataSetList(CyNetworkView netView) {
    EMViewControlPanel viewPanel = getControlPanel().getViewControlPanel(netView);
    viewPanel.updateDataSetSelector();
    updateLegends(viewPanel);
}

Example 5 with EMViewControlPanel

use of org.baderlab.csplugins.enrichmentmap.view.control.ControlPanel.EMViewControlPanel in project EnrichmentMapApp by BaderLab.

the class ControlPanelMediator method createStyleOptions.

public EMStyleOptions createStyleOptions(CyNetworkView netView) {
    EnrichmentMap map = netView != null ? emManager.getEnrichmentMap(netView.getModel().getSUID()) : null;
    EMViewControlPanel viewPanel = getControlPanel().getViewControlPanel(netView);
    return createStyleOptions(map, viewPanel);
}