Examples with SymbolList org.biojava.bio.symbol.SymbolList used on opensource projects

Example 6 with SymbolList

use of org.biojava.bio.symbol.SymbolList in project ice by JBEI.

the class SequenceUtils method translateToProtein.

/**
     * Calculate the amino acid translation of the given dnaSequence string.
     *
     * @param dnaSequence DNA sequence to translate.
     * @return String of amino acid symbols.
     * @throws UtilityException
     */
public static String translateToProtein(String dnaSequence) throws UtilityException {
    SymbolList symL = null;
    try {
        symL = DNATools.createDNA(dnaSequence);
        symL = DNATools.toProtein(symL);
    } catch (IllegalSymbolException | IllegalAlphabetException e) {
        throw new UtilityException(e);
    }
    return symL.seqString();
}