Examples with CommandLineParser org.broadinstitute.barclay.argparser.CommandLineParser used on opensource projects

Example 1 with CommandLineParser

use of org.broadinstitute.barclay.argparser.CommandLineParser in project gatk by broadinstitute.

the class FeatureInputArgumentCollectionTest method testOptionalIsOptional.

@Test
public void testOptionalIsOptional() {
    Object req = new Object() {

        @ArgumentCollection
        private OptionalFeatureInputArgumentCollection ric = new OptionalFeatureInputArgumentCollection();
    };
    CommandLineParser clp = new CommandLineArgumentParser(req);
    String[] args = {};
    clp.parseArguments(System.out, args);
}

Example 2 with CommandLineParser

use of org.broadinstitute.barclay.argparser.CommandLineParser in project gatk by broadinstitute.

the class ReadInputArgumentCollectionTest method testOptionalIsOptional.

@Test
public void testOptionalIsOptional() {
    Object req = new Object() {

        @ArgumentCollection
        private ReadInputArgumentCollection ric = new OptionalReadInputArgumentCollection();
    };
    CommandLineParser clp = new CommandLineArgumentParser(req);
    String[] args = {};
    clp.parseArguments(System.out, args);
}

Example 3 with CommandLineParser

use of org.broadinstitute.barclay.argparser.CommandLineParser in project gatk by broadinstitute.

the class ReferenceInputArgumentCollectionTest method testOptionalIsOptional.

@Test
public void testOptionalIsOptional() {
    String[] args = {};
    WithOptionalReferenceCollection optional = new WithOptionalReferenceCollection();
    CommandLineParser clp = new CommandLineArgumentParser(optional);
    clp.parseArguments(System.out, args);
}

Example 4 with CommandLineParser

use of org.broadinstitute.barclay.argparser.CommandLineParser in project gatk by broadinstitute.

the class FeatureInputArgumentCollectionTest method testRequiredIsRequired.

@Test(expectedExceptions = CommandLineException.class)
public void testRequiredIsRequired() {
    Object req = new Object() {

        @ArgumentCollection
        private RequiredFeatureInputArgumentCollection ric = new RequiredFeatureInputArgumentCollection();
    };
    CommandLineParser clp = new CommandLineArgumentParser(req);
    String[] args = {};
    clp.parseArguments(System.out, args);
}

Example 5 with CommandLineParser

use of org.broadinstitute.barclay.argparser.CommandLineParser in project gatk by broadinstitute.

the class IntervalArgumentCollectionTest method testOptionalIsOptional.

@Test
public void testOptionalIsOptional() {
    WithOptionalIntervals opt = new WithOptionalIntervals();
    CommandLineParser clp = new CommandLineArgumentParser(opt);
    String[] args = {};
    clp.parseArguments(System.out, args);
}