Examples with AuthHolder org.broadinstitute.hellbender.engine.AuthHolder used on opensource projects

Example 1 with AuthHolder

use of org.broadinstitute.hellbender.engine.AuthHolder in project gatk-protected by broadinstitute.

the class HaplotypeCallerSparkIntegrationTest method testReferenceAdapterIsSerializable.

@Test
public void testReferenceAdapterIsSerializable() throws IOException {
    final AuthHolder auth = new AuthHolder("name", "somestring");
    final ReferenceMultiSource referenceMultiSource = new ReferenceMultiSource(auth, b37_2bit_reference_20_21, ReferenceWindowFunctions.IDENTITY_FUNCTION);
    SparkTestUtils.roundTripInKryo(referenceMultiSource, ReferenceMultiSource.class, SparkContextFactory.getTestSparkContext().getConf());
    final HaplotypeCallerSpark.ReferenceMultiSourceAdapter adapter = new HaplotypeCallerSpark.ReferenceMultiSourceAdapter(referenceMultiSource, auth);
    SparkTestUtils.roundTripInKryo(adapter, HaplotypeCallerSpark.ReferenceMultiSourceAdapter.class, SparkContextFactory.getTestSparkContext().getConf());
}

Example 2 with AuthHolder

use of org.broadinstitute.hellbender.engine.AuthHolder in project gatk by broadinstitute.

the class HaplotypeCallerSparkIntegrationTest method testReferenceAdapterIsSerializable.

@Test
public void testReferenceAdapterIsSerializable() throws IOException {
    final AuthHolder auth = new AuthHolder("name", "somestring");
    final ReferenceMultiSource referenceMultiSource = new ReferenceMultiSource(auth, b37_2bit_reference_20_21, ReferenceWindowFunctions.IDENTITY_FUNCTION);
    SparkTestUtils.roundTripInKryo(referenceMultiSource, ReferenceMultiSource.class, SparkContextFactory.getTestSparkContext().getConf());
    final HaplotypeCallerSpark.ReferenceMultiSourceAdapter adapter = new HaplotypeCallerSpark.ReferenceMultiSourceAdapter(referenceMultiSource, auth);
    SparkTestUtils.roundTripInKryo(adapter, HaplotypeCallerSpark.ReferenceMultiSourceAdapter.class, SparkContextFactory.getTestSparkContext().getConf());
}