Examples with HaplotypeCallerArgumentCollection org.broadinstitute.hellbender.tools.walkers.haplotypecaller.HaplotypeCallerArgumentCollection used on opensource projects

Example 1 with HaplotypeCallerArgumentCollection

use of org.broadinstitute.hellbender.tools.walkers.haplotypecaller.HaplotypeCallerArgumentCollection in project gatk-protected by broadinstitute.

the class HaplotypeCallerSparkIntegrationTest method testHaplotypeCallerArgsAreSerializable.

@Test
public void testHaplotypeCallerArgsAreSerializable() {
    final HaplotypeCallerArgumentCollection args = new HaplotypeCallerArgumentCollection();
    SparkTestUtils.roundTripInKryo(args, HaplotypeCallerArgumentCollection.class, SparkContextFactory.getTestSparkContext().getConf());
}

Example 2 with HaplotypeCallerArgumentCollection

use of org.broadinstitute.hellbender.tools.walkers.haplotypecaller.HaplotypeCallerArgumentCollection in project gatk by broadinstitute.

the class HaplotypeCallerSparkIntegrationTest method testHaplotypeCallerArgsAreSerializable.

@Test
public void testHaplotypeCallerArgsAreSerializable() {
    final HaplotypeCallerArgumentCollection args = new HaplotypeCallerArgumentCollection();
    SparkTestUtils.roundTripInKryo(args, HaplotypeCallerArgumentCollection.class, SparkContextFactory.getTestSparkContext().getConf());
}

Example 3 with HaplotypeCallerArgumentCollection

use of org.broadinstitute.hellbender.tools.walkers.haplotypecaller.HaplotypeCallerArgumentCollection in project gatk by broadinstitute.

the class HaplotypeCallerSparkIntegrationTest method testBroadcastHcArgs.

@Test
public void testBroadcastHcArgs() {
    Broadcast<HaplotypeCallerArgumentCollection> broadcast = SparkContextFactory.getTestSparkContext().broadcast(new HaplotypeCallerArgumentCollection());
    broadcast.getValue();
}

Example 4 with HaplotypeCallerArgumentCollection

use of org.broadinstitute.hellbender.tools.walkers.haplotypecaller.HaplotypeCallerArgumentCollection in project gatk-protected by broadinstitute.

the class HaplotypeCallerSparkIntegrationTest method testBroadcastHcArgs.

@Test
public void testBroadcastHcArgs() {
    Broadcast<HaplotypeCallerArgumentCollection> broadcast = SparkContextFactory.getTestSparkContext().broadcast(new HaplotypeCallerArgumentCollection());
    broadcast.getValue();
}