Examples with App org.cytoscape.app.internal.manager.App used on opensource projects

Example 1 with App

use of org.cytoscape.app.internal.manager.App in project cytoscape-impl by cytoscape.

the class AppConflictHandler method setTunableDirectly.

@Override
public boolean setTunableDirectly(Window possibleParent) {
    try {
        AppConflict conflict = (AppConflict) getValue();
        Map<App, App> appsToReplace = conflict.getAppsToReplace();
        JPanel panel = new JPanel();
        panel.setLayout(new BoxLayout(panel, BoxLayout.PAGE_AXIS));
        JLabel title = new JLabel("The following " + (appsToReplace.size() == 1 ? "app" : "apps") + " will be replaced:");
        title.setAlignmentX(Component.LEFT_ALIGNMENT);
        panel.add(title);
        panel.add(Box.createVerticalStrut(title.getPreferredSize().height));
        String deps = "";
        for (Entry<App, App> entry : appsToReplace.entrySet()) {
            deps += entry.getKey().getAppName() + " (to be installed: " + entry.getKey().getVersion() + ", " + entry.getValue().getVersion() + " currently installed)\n";
        }
        deps = deps.substring(0, deps.length() - 1);
        JTextArea textArea = new JTextArea(deps);
        textArea.setRows(Math.min(appsToReplace.size(), 10));
        textArea.setEditable(false);
        // disables text selection
        textArea.setHighlighter(null);
        textArea.setBorder(null);
        textArea.setOpaque(false);
        JScrollPane scrollPane = new JScrollPane(textArea);
        scrollPane.setAlignmentX(Component.LEFT_ALIGNMENT);
        scrollPane.setBorder(null);
        scrollPane.getViewport().setOpaque(false);
        scrollPane.setOpaque(false);
        panel.add(scrollPane);
        panel.add(Box.createVerticalStrut(title.getPreferredSize().height));
        JLabel message = new JLabel("Continue?");
        message.setAlignmentX(Component.LEFT_ALIGNMENT);
        panel.add(message);
        Dimension size = panel.getPreferredSize();
        if (size.width > 600) {
            size.width = 600;
            panel.setPreferredSize(size);
        }
        int response = JOptionPane.showConfirmDialog(possibleParent, panel, "Replace " + (appsToReplace.size() == 1 ? "App" : "Apps"), JOptionPane.OK_CANCEL_OPTION);
        conflict.setReplaceApps(response);
    } catch (IllegalAccessException e) {
        logger.warn("Error accessing conflict object", e);
    } catch (InvocationTargetException e) {
        logger.warn("Exception thrown by conflict object", e);
    }
    return true;
}

Example 2 with App

use of org.cytoscape.app.internal.manager.App in project cytoscape-impl by cytoscape.

the class ResolveAppDependenciesTask method run.

@Override
public void run(TaskMonitor taskMonitor) throws Exception {
    this.taskMonitor = taskMonitor;
    status = new DownloadStatus(taskMonitor);
    while (!appQueue.isEmpty()) {
        App app = appQueue.poll();
        resolveAppDependencies(app);
    }
    if (promptToReplace && !appsToReplace.isEmpty())
        insertTasksAfterCurrentTask(new ResolveAppConflictTask(appsToInstall, appsToReplace, appManager));
    else
        insertTasksAfterCurrentTask(new InstallAppsTask(appsToInstall, appsToReplace, appManager));
}

Example 3 with App

use of org.cytoscape.app.internal.manager.App in project cytoscape-impl by cytoscape.

the class StatusTask method run.

@Override
public void run(TaskMonitor taskMonitor) throws Exception {
    if (app == null) {
        taskMonitor.showMessage(TaskMonitor.Level.ERROR, "App name not provided");
        return;
    }
    taskMonitor.setTitle("Getting the status of app " + app);
    App appObject = getApp(app);
    if (appObject == null) {
        taskMonitor.showMessage(TaskMonitor.Level.ERROR, "Can't find app '" + app + "'");
        return;
    }
    status = appObject.getStatus();
}

Example 4 with App

use of org.cytoscape.app.internal.manager.App in project cytoscape-impl by cytoscape.

the class CurrentlyInstalledAppsPanel method disableSelectedButtonActionPerformed.

private void disableSelectedButtonActionPerformed(ActionEvent evt) {
    // Obtain App objects corresponding to currently selected table entries
    Set<App> selectedApps = getSelectedApps();
    Map<App, Collection<App>> otherAppsDependingOn = getOtherAppsDependingOn(selectedApps);
    if (otherAppsDependingOn != null && !continueWithConflicts(otherAppsDependingOn))
        return;
    for (App app : selectedApps) {
        if (app.getStatus().equals(AppStatus.DISABLED))
            continue;
        try {
            appManager.disableApp(app);
        } catch (AppDisableException e) {
            // TODO Auto-generated catch block
            e.printStackTrace();
        }
    }
    disableSelectedButton.setEnabled(false);
    enableSelectedButton.setEnabled(true);
    uninstallSelectedButton.setEnabled(true);
}

Example 5 with App

use of org.cytoscape.app.internal.manager.App in project cytoscape-impl by cytoscape.

the class CurrentlyInstalledAppsPanel method uninstallSelectedButtonActionPerformed.

private void uninstallSelectedButtonActionPerformed(ActionEvent evt) {
    // Obtain App objects corresponding to currently selected table entries
    Set<App> selectedApps = getSelectedApps();
    Map<App, Collection<App>> otherAppsDependingOn = getOtherAppsDependingOn(selectedApps);
    if (otherAppsDependingOn != null && !continueWithConflicts(otherAppsDependingOn))
        return;
    for (App app : selectedApps) {
        // Only uninstall apps that are installed
        if (app.getStatus() == AppStatus.INSTALLED || app.getStatus() == AppStatus.DISABLED || app.getStatus() == AppStatus.FAILED_TO_LOAD || app.getStatus() == AppStatus.FAILED_TO_START) {
            try {
                appManager.uninstallApp(app);
            } catch (AppUninstallException e) {
                // TODO Auto-generated catch block
                e.printStackTrace();
            }
        }
    }
    uninstallSelectedButton.setEnabled(false);
    disableSelectedButton.setEnabled(true);
    enableSelectedButton.setEnabled(true);
    appsAvailableTable.clearSelection();
}