Examples with ValidatedObjectAndEditString org.cytoscape.browser.internal.util.ValidatedObjectAndEditString used on opensource projects

Example 6 with ValidatedObjectAndEditString

use of org.cytoscape.browser.internal.util.ValidatedObjectAndEditString in project cytoscape-impl by cytoscape.

the class BrowserTable method selectFromTable.

private void selectFromTable() {
    final TableModel model = this.getModel();
    if (model instanceof BrowserTableModel == false)
        return;
    final BrowserTableModel btModel = (BrowserTableModel) model;
    if (btModel.getViewMode() != BrowserTableModel.ViewMode.ALL)
        return;
    final CyTable table = btModel.getDataTable();
    final CyColumn pKey = table.getPrimaryKey();
    final String pKeyName = pKey.getName();
    final int[] rowsSelected = getSelectedRows();
    if (rowsSelected.length == 0)
        return;
    final int selectedRowCount = getSelectedRowCount();
    final Set<CyRow> targetRows = new HashSet<CyRow>();
    for (int i = 0; i < selectedRowCount; i++) {
        // getting the row from data table solves the problem with hidden or
        // moved SUID column. However, since the rows might be sorted we
        // need to convert the index to model
        final ValidatedObjectAndEditString selected = (ValidatedObjectAndEditString) btModel.getValueAt(convertRowIndexToModel(rowsSelected[i]), pKeyName);
        targetRows.add(btModel.getRow(selected.getValidatedObject()));
    }
    // Clear selection for non-global table
    final CyTableManager tableManager = serviceRegistrar.getService(CyTableManager.class);
    if (tableManager.getGlobalTables().contains(table) == false) {
        List<CyRow> allRows = btModel.getDataTable().getAllRows();
        try {
            ignoreRowSetEvents = true;
            for (CyRow row : allRows) {
                final Boolean val = row.get(CyNetwork.SELECTED, Boolean.class);
                if (targetRows.contains(row)) {
                    row.set(CyNetwork.SELECTED, true);
                    continue;
                }
                if (val != null && (val == true))
                    row.set(CyNetwork.SELECTED, false);
            }
            final CyApplicationManager applicationManager = serviceRegistrar.getService(CyApplicationManager.class);
            final CyNetworkView curView = applicationManager.getCurrentNetworkView();
            if (curView != null) {
                final CyEventHelper eventHelper = serviceRegistrar.getService(CyEventHelper.class);
                eventHelper.flushPayloadEvents();
                curView.updateView();
            }
        } finally {
            ignoreRowSetEvents = false;
        }
        repaint();
    }
}

Example 7 with ValidatedObjectAndEditString

use of org.cytoscape.browser.internal.util.ValidatedObjectAndEditString in project cytoscape-impl by cytoscape.

the class BrowserTable method showListContents.

public void showListContents(int modelRow, int modelColumn, MouseEvent e) {
    final BrowserTableModel model = (BrowserTableModel) getModel();
    final Class<?> columnType = model.getColumn(modelColumn).getType();
    if (columnType == List.class) {
        final ValidatedObjectAndEditString value = (ValidatedObjectAndEditString) model.getValueAt(modelRow, modelColumn);
        if (value != null) {
            final List<?> list = (List<?>) value.getValidatedObject();
            if (list != null && !list.isEmpty())
                showCellMenu(List.class, list, "Entries", e);
        }
    }
}

Example 8 with ValidatedObjectAndEditString

use of org.cytoscape.browser.internal.util.ValidatedObjectAndEditString in project cytoscape-impl by cytoscape.

the class BrowserTable method changeRowSelection.

protected void changeRowSelection(final Set<Long> suidSelected, final Set<Long> suidUnselected) {
    final BrowserTableModel model = (BrowserTableModel) getModel();
    final CyTable dataTable = model.getDataTable();
    final String pKeyName = dataTable.getPrimaryKey().getName();
    final int rowCount = getRowCount();
    try {
        ignoreRowSelectionEvents = true;
        for (int i = 0; i < rowCount; i++) {
            // Getting the row from data table solves the problem with hidden or moved SUID column.
            // However, since the rows might be sorted we need to convert the index to model
            int modelRow = convertRowIndexToModel(i);
            final ValidatedObjectAndEditString tableKey = (ValidatedObjectAndEditString) model.getValueAt(modelRow, pKeyName);
            Long pk = null;
            try {
                // TODO: Temp fix: is it a requirement that all CyTables have a Long SUID column as PK?
                pk = Long.parseLong(tableKey.getEditString());
            } catch (NumberFormatException nfe) {
                logger.error("Error parsing long from table " + getName(), nfe);
            }
            if (pk != null) {
                if (suidSelected.contains(pk))
                    addRowSelectionInterval(i, i);
                else if (suidUnselected.contains(pk))
                    removeRowSelectionInterval(i, i);
            }
        }
    } finally {
        ignoreRowSelectionEvents = false;
    }
}

Example 9 with ValidatedObjectAndEditString

use of org.cytoscape.browser.internal.util.ValidatedObjectAndEditString in project cytoscape-impl by cytoscape.

the class BrowserTable method maybeShowPopup.

private void maybeShowPopup(final MouseEvent e) {
    if (e.isPopupTrigger()) {
        if (LookAndFeelUtil.isWindows())
            selectFocusedCell(e);
        // Show context menu
        final int viewColumn = getColumnModel().getColumnIndexAtX(e.getX());
        final int viewRow = e.getY() / getRowHeight();
        final int modelColumn = convertColumnIndexToModel(viewColumn);
        final int modelRow = convertRowIndexToModel(viewRow);
        final BrowserTableModel tableModel = (BrowserTableModel) this.getModel();
        // Bail out if we're at the ID column:
        if (tableModel.isPrimaryKey(modelColumn))
            return;
        // Make sure the column and row we're clicking on actually exists!
        if (modelColumn >= tableModel.getColumnCount() || modelRow >= tableModel.getRowCount())
            return;
        final CyColumn cyColumn = tableModel.getColumn(modelColumn);
        final Object primaryKeyValue = ((ValidatedObjectAndEditString) tableModel.getValueAt(modelRow, tableModel.getDataTable().getPrimaryKey().getName())).getValidatedObject();
        popupMenuHelper.createTableCellMenu(cyColumn, primaryKeyValue, tableModel.getTableType(), this, e.getX(), e.getY(), this);
    }
}