Examples with CyEventHelper org.cytoscape.event.CyEventHelper used on opensource projects

Example 1 with CyEventHelper

use of org.cytoscape.event.CyEventHelper in project cytoscape-impl by cytoscape.

the class CyActivator method start.

@Override
public void start(BundleContext bc) {
    CyServiceRegistrar serviceRegistrar = getService(bc, CyServiceRegistrar.class);
    CyEventHelper cyEventHelperRef = getService(bc, CyEventHelper.class);
    CyNetworkNaming cyNetworkNamingServiceRef = getService(bc, CyNetworkNaming.class);
    UndoSupport undoSupportServiceRef = getService(bc, UndoSupport.class);
    CyNetworkViewFactory cyNetworkViewFactoryServiceRef = getService(bc, CyNetworkViewFactory.class);
    CyNetworkFactory cyNetworkFactoryServiceRef = getService(bc, CyNetworkFactory.class);
    CyRootNetworkManager cyRootNetworkFactoryServiceRef = getService(bc, CyRootNetworkManager.class);
    VisualMappingManager visualMappingManagerServiceRef = getService(bc, VisualMappingManager.class);
    CyNetworkViewWriterManager networkViewWriterManagerServiceRef = getService(bc, CyNetworkViewWriterManager.class);
    CyNetworkManager cyNetworkManagerServiceRef = getService(bc, CyNetworkManager.class);
    CyNetworkViewManager cyNetworkViewManagerServiceRef = getService(bc, CyNetworkViewManager.class);
    CyApplicationManager cyApplicationManagerServiceRef = getService(bc, CyApplicationManager.class);
    CySessionManager cySessionManagerServiceRef = getService(bc, CySessionManager.class);
    CyTableFactory cyTableFactoryServiceRef = getService(bc, CyTableFactory.class);
    CyTableManager cyTableManagerServiceRef = getService(bc, CyTableManager.class);
    CyLayoutAlgorithmManager cyLayoutsServiceRef = getService(bc, CyLayoutAlgorithmManager.class);
    CyTableWriterManager cyTableWriterManagerRef = getService(bc, CyTableWriterManager.class);
    SynchronousTaskManager<?> synchronousTaskManagerServiceRef = getService(bc, SynchronousTaskManager.class);
    TunableSetter tunableSetterServiceRef = getService(bc, TunableSetter.class);
    CyRootNetworkManager rootNetworkManagerServiceRef = getService(bc, CyRootNetworkManager.class);
    CyNetworkTableManager cyNetworkTableManagerServiceRef = getService(bc, CyNetworkTableManager.class);
    RenderingEngineManager renderingEngineManagerServiceRef = getService(bc, RenderingEngineManager.class);
    CyNetworkViewFactory nullNetworkViewFactory = getService(bc, CyNetworkViewFactory.class, "(id=NullCyNetworkViewFactory)");
    CyGroupManager cyGroupManager = getService(bc, CyGroupManager.class);
    CyGroupFactory cyGroupFactory = getService(bc, CyGroupFactory.class);
    {
        DynamicTaskFactoryProvisionerImpl factory = new DynamicTaskFactoryProvisionerImpl(serviceRegistrar);
        registerAllServices(bc, factory);
    }
    createPreferencesTaskFactories(bc, serviceRegistrar);
    createFilterTaskFactories(bc, serviceRegistrar);
    createTableTaskFactories(bc, serviceRegistrar, undoSupportServiceRef, cyNetworkManagerServiceRef, cyApplicationManagerServiceRef, cyTableFactoryServiceRef, cyTableManagerServiceRef, cyTableWriterManagerRef, tunableSetterServiceRef, rootNetworkManagerServiceRef, cyNetworkTableManagerServiceRef);
    createNetworkTaskFactories(bc, serviceRegistrar, cyEventHelperRef, cyNetworkNamingServiceRef, undoSupportServiceRef, cyNetworkViewFactoryServiceRef, cyNetworkFactoryServiceRef, cyRootNetworkFactoryServiceRef, visualMappingManagerServiceRef, cyNetworkManagerServiceRef, cyNetworkViewManagerServiceRef, cyApplicationManagerServiceRef, synchronousTaskManagerServiceRef, rootNetworkManagerServiceRef, cyNetworkTableManagerServiceRef, renderingEngineManagerServiceRef, nullNetworkViewFactory, cyGroupManager, cyGroupFactory, networkViewWriterManagerServiceRef, tunableSetterServiceRef);
    createViewTaskFactories(bc, cyEventHelperRef, undoSupportServiceRef, visualMappingManagerServiceRef, networkViewWriterManagerServiceRef, cyNetworkViewManagerServiceRef, cyApplicationManagerServiceRef, cyLayoutsServiceRef, tunableSetterServiceRef, renderingEngineManagerServiceRef, cyNetworkManagerServiceRef, cySessionManagerServiceRef, serviceRegistrar);
    createVizmapTaskFactories(bc, serviceRegistrar);
    createSessionTaskFactories(bc, serviceRegistrar);
    createGroupTaskFactories(bc, undoSupportServiceRef, cyApplicationManagerServiceRef, cyGroupManager, cyGroupFactory, serviceRegistrar);
    createNodeEdgeTaskFactories(bc, serviceRegistrar, cyEventHelperRef, undoSupportServiceRef, cyNetworkViewManagerServiceRef, tunableSetterServiceRef, cyApplicationManagerServiceRef, cyTableManagerServiceRef, renderingEngineManagerServiceRef, visualMappingManagerServiceRef);
    createLayoutTaskFactories(bc, serviceRegistrar);
    createHelpTaskFactories(bc, serviceRegistrar);
}

Example 2 with CyEventHelper

use of org.cytoscape.event.CyEventHelper in project cytoscape-impl by cytoscape.

the class UnHideTask method run.

@Override
public void run(TaskMonitor e) {
    e.setProgress(0.0);
    final CyNetwork network = view.getModel();
    final List<CyIdentifiable> elements = new ArrayList<>();
    nodes = null;
    edges = null;
    e.setProgress(0.1);
    if (unhideNodes) {
        nodes = network.getNodeList();
        elements.addAll(nodes);
    }
    if (unhideEdges) {
        edges = network.getEdgeList();
        elements.addAll(edges);
    }
    e.setProgress(0.2);
    final UndoSupport undoSupport = serviceRegistrar.getService(UndoSupport.class);
    final CyEventHelper eventHelper = serviceRegistrar.getService(CyEventHelper.class);
    final VisualMappingManager vmMgr = serviceRegistrar.getService(VisualMappingManager.class);
    undoSupport.postEdit(new HideEdit(description, view, elements, true, eventHelper, vmMgr));
    e.setProgress(0.3);
    if (nodes != null)
        HideUtils.setVisibleNodes(nodes, true, view);
    e.setProgress(0.5);
    if (edges != null)
        HideUtils.setVisibleEdges(edges, true, view);
    e.setProgress(0.7);
    vmMgr.getVisualStyle(view).apply(view);
    view.updateView();
    e.setProgress(1.0);
}

Example 3 with CyEventHelper

use of org.cytoscape.event.CyEventHelper in project cytoscape-impl by cytoscape.

the class SIFInterpreterTask method run.

@Override
public void run(TaskMonitor tm) {
    if (sifString == null)
        throw new NullPointerException("SIF input string is null");
    String[] terms = sifString.split("\\s");
    if (terms != null) {
        if (terms.length > 0) {
            String name1 = terms[0].trim();
            if (!name1.equals(null)) {
                CyNode node1 = findNode(terms[0]);
                if (node1 == null) {
                    node1 = network.addNode();
                    network.getRow(node1).set("name", terms[0]);
                // nv1 = view.getNodeView(node1);
                // double[] nextLocn = new double[2];
                // nextLocn[0] = p.getX();
                // nextLocn[1] = p.getY();
                // view.xformComponentToNodeCoords(nextLocn);
                // nv1.setOffset(nextLocn[0], nextLocn[1]);
                } else {
                // nv1 = view.getNodeView(node1);
                }
                if (terms.length == 3) {
                    // simple case of 'A interaction B'
                    CyNode node2 = findNode(terms[2]);
                    if (node2 == null) {
                        node2 = network.addNode();
                        network.getRow(node2).set("name", terms[2]);
                    // nv2 = view.getNodeView(node2);
                    // nv2.setOffset(nv1.getXPosition() + spacing, nv1.getYPosition());
                    }
                    CyEdge edge = network.addEdge(node1, node2, true);
                    network.getRow(edge).set("name", terms[1]);
                } else if (terms.length > 3) {
                    // process multiple targets and one source
                    List<View<CyNode>> nodeViews = new ArrayList<View<CyNode>>();
                    String interactionType = terms[1];
                    for (int i = 2; i < terms.length; i++) {
                        CyNode node2 = findNode(terms[i]);
                        if (node2 == null) {
                            node2 = network.addNode();
                            network.getRow(node2).set("name", terms[i]);
                        // nv2 = view.getNodeView(node2);
                        // nv2.setOffset(nv1.getXPosition() + spacing, nv1
                        // .getYPosition());
                        }
                        CyEdge edge = network.addEdge(node1, node2, true);
                        network.getRow(edge).set("name", terms[1]);
                    // doCircleLayout(nodeViews, nv1);
                    }
                }
            }
            // Apply visual style
            final CyEventHelper eventHelper = serviceRegistrar.getService(CyEventHelper.class);
            // To make sure the edge view is created before applying the style
            eventHelper.flushPayloadEvents();
            final VisualMappingManager vmMgr = serviceRegistrar.getService(VisualMappingManager.class);
            VisualStyle vs = vmMgr.getVisualStyle(view);
            vs.apply(view);
            view.updateView();
        }
    }
}

Example 4 with CyEventHelper

use of org.cytoscape.event.CyEventHelper in project cytoscape-impl by cytoscape.

the class EquationParserImpl method unregisterFunctionService.

public void unregisterFunctionService(final Function function, final Map<?, ?> props) {
    if (function != null) {
        registeredFunctions.remove(function);
        nameToFunctionMap.remove(function.getName().toUpperCase(), function);
        final CyEventHelper eventHelper = serviceRegistrar.getService(CyEventHelper.class);
        eventHelper.addEventPayload(this, function, EquationFunctionRemovedEvent.class);
    }
}

Example 5 with CyEventHelper

use of org.cytoscape.event.CyEventHelper in project cytoscape-impl by cytoscape.

the class EquationParserImpl method registerFunction.

@Deprecated
@Override
public void registerFunction(Function func) throws IllegalArgumentException {
    registerFunctionInternal(func);
    final CyEventHelper eventHelper = serviceRegistrar.getService(CyEventHelper.class);
    eventHelper.addEventPayload(this, func, EquationFunctionAddedEvent.class);
}