Examples with CyEventHelper org.cytoscape.event.CyEventHelper used on opensource projects

Example 41 with CyEventHelper

use of org.cytoscape.event.CyEventHelper in project cytoscape-impl by cytoscape.

the class CyTableManagerImpl method deleteTableInternal.

void deleteTableInternal(final long suid, boolean force) {
    CyTable table;
    synchronized (lock) {
        table = tables.get(suid);
        if (table == null) {
            return;
        }
    }
    final CyEventHelper eventHelper = serviceRegistrar.getService(CyEventHelper.class);
    eventHelper.fireEvent(new TableAboutToBeDeletedEvent(this, table));
    synchronized (lock) {
        table = tables.get(suid);
        if (table == null) {
            return;
        }
        if (!force && (table.getMutability() != Mutability.MUTABLE)) {
            throw new IllegalArgumentException("can't delete an immutable table.");
        }
        if (table instanceof CyTableImpl)
            ((CyTableImpl) table).removeAllVirtColumns();
        tables.remove(suid);
    }
    eventHelper.fireEvent(new TableDeletedEvent(this));
    logger.debug("CyTable removed: table ID = " + table.getSUID());
    table = null;
}

Example 42 with CyEventHelper

use of org.cytoscape.event.CyEventHelper in project cytoscape-impl by cytoscape.

the class RenderingEngineManagerTest method setUp.

@Before
public void setUp() throws Exception {
    final CyEventHelper eventHelper = mock(CyEventHelper.class);
    final CyServiceRegistrar serviceRegistrar = mock(CyServiceRegistrar.class);
    when(serviceRegistrar.getService(CyEventHelper.class)).thenReturn(eventHelper);
    manager = new RenderingEngineManagerImpl(serviceRegistrar);
}

Example 43 with CyEventHelper

use of org.cytoscape.event.CyEventHelper in project cytoscape-impl by cytoscape.

the class BrowserTable method selectFromTable.

private void selectFromTable() {
    final TableModel model = this.getModel();
    if (model instanceof BrowserTableModel == false)
        return;
    final BrowserTableModel btModel = (BrowserTableModel) model;
    if (btModel.getViewMode() != BrowserTableModel.ViewMode.ALL)
        return;
    final CyTable table = btModel.getDataTable();
    final CyColumn pKey = table.getPrimaryKey();
    final String pKeyName = pKey.getName();
    final int[] rowsSelected = getSelectedRows();
    if (rowsSelected.length == 0)
        return;
    final int selectedRowCount = getSelectedRowCount();
    final Set<CyRow> targetRows = new HashSet<CyRow>();
    for (int i = 0; i < selectedRowCount; i++) {
        // getting the row from data table solves the problem with hidden or
        // moved SUID column. However, since the rows might be sorted we
        // need to convert the index to model
        final ValidatedObjectAndEditString selected = (ValidatedObjectAndEditString) btModel.getValueAt(convertRowIndexToModel(rowsSelected[i]), pKeyName);
        targetRows.add(btModel.getRow(selected.getValidatedObject()));
    }
    // Clear selection for non-global table
    final CyTableManager tableManager = serviceRegistrar.getService(CyTableManager.class);
    if (tableManager.getGlobalTables().contains(table) == false) {
        List<CyRow> allRows = btModel.getDataTable().getAllRows();
        try {
            ignoreRowSetEvents = true;
            for (CyRow row : allRows) {
                final Boolean val = row.get(CyNetwork.SELECTED, Boolean.class);
                if (targetRows.contains(row)) {
                    row.set(CyNetwork.SELECTED, true);
                    continue;
                }
                if (val != null && (val == true))
                    row.set(CyNetwork.SELECTED, false);
            }
            final CyApplicationManager applicationManager = serviceRegistrar.getService(CyApplicationManager.class);
            final CyNetworkView curView = applicationManager.getCurrentNetworkView();
            if (curView != null) {
                final CyEventHelper eventHelper = serviceRegistrar.getService(CyEventHelper.class);
                eventHelper.flushPayloadEvents();
                curView.updateView();
            }
        } finally {
            ignoreRowSetEvents = false;
        }
        repaint();
    }
}

Example 44 with CyEventHelper

use of org.cytoscape.event.CyEventHelper in project cytoscape-impl by cytoscape.

the class TestProxySettings method run.

@Override
public void run(TaskMonitor tm) {
    tm.setProgress(0.0);
    final CyProperty<Properties> proxyProps = getProxyProperties();
    final Properties props = proxyProps.getProperties();
    storeProxySettings(props);
    final CyEventHelper eventHelper = serviceRegistrar.getService(CyEventHelper.class);
    for (String key : oldSettings.keySet()) {
        if (!oldSettings.get(key).equals(props.get(key))) {
            eventHelper.fireEvent(new PropertyUpdatedEvent(proxyProps));
            break;
        }
    }
    oldSettings.clear();
    tm.setProgress(1.0);
}

Example 45 with CyEventHelper

use of org.cytoscape.event.CyEventHelper in project cytoscape-impl by cytoscape.

the class DeleteSelectedNodesAndEdgesTask method run.

@Override
public void run(final TaskMonitor taskMonitor) {
    taskMonitor.setProgress(0.0);
    List<CyNode> nodeList = tunables.getNodeList(false);
    List<CyEdge> edgeList = tunables.getEdgeList(false);
    if (tunables.getNetwork() != null)
        network = tunables.getNetwork();
    // Delete from the base network so that our changes can be undone:
    if (nodeList == null && edgeList == null) {
        selectedNodes = CyTableUtil.getNodesInState(network, "selected", true);
        taskMonitor.setProgress(0.1);
        selectedEdges = new HashSet<CyEdge>(CyTableUtil.getEdgesInState(network, "selected", true));
    } else {
        if (nodeList != null && nodeList.size() > 0)
            selectedNodes = nodeList;
        else
            selectedNodes = new ArrayList<CyNode>();
        if (edgeList != null && edgeList.size() > 0)
            selectedEdges = new HashSet<CyEdge>(edgeList);
        else
            selectedEdges = new HashSet<CyEdge>();
    }
    taskMonitor.setProgress(0.2);
    // Make sure we're not loosing any edges for a possible undo!
    for (CyNode selectedNode : selectedNodes) selectedEdges.addAll(network.getAdjacentEdgeList(selectedNode, CyEdge.Type.ANY));
    taskMonitor.setProgress(0.3);
    final UndoSupport undoSupport = serviceRegistrar.getService(UndoSupport.class);
    final CyNetworkViewManager netViewMgr = serviceRegistrar.getService(CyNetworkViewManager.class);
    final VisualMappingManager vmMgr = serviceRegistrar.getService(VisualMappingManager.class);
    final CyEventHelper eventHelper = serviceRegistrar.getService(CyEventHelper.class);
    undoSupport.postEdit(new DeleteEdit((CySubNetwork) network, selectedNodes, selectedEdges, netViewMgr, vmMgr, eventHelper));
    // Delete the actual nodes and edges:
    network.removeEdges(selectedEdges);
    taskMonitor.setProgress(0.7);
    network.removeNodes(selectedNodes);
    taskMonitor.setProgress(0.9);
    // Update network views
    final Collection<CyNetworkView> views = netViewMgr.getNetworkViews(network);
    for (final CyNetworkView netView : views) netView.updateView();
    taskMonitor.setProgress(1.0);
}