use of org.cytoscape.filter.internal.view.FilterPanel in project cytoscape-impl by cytoscape.
the class CyActivator method start.
@Override
public void start(BundleContext bc) {
final CyServiceRegistrar serviceRegistrar = getService(bc, CyServiceRegistrar.class);
TransformerManagerImpl transformerManager = new TransformerManagerImpl();
registerService(bc, transformerManager, TransformerManager.class, new Properties());
registerServiceListener(bc, transformerManager::registerTransformerSource, transformerManager::unregisterTransformerSource, TransformerSource.class);
registerServiceListener(bc, transformerManager::registerFilterFactory, transformerManager::unregisterFilterFactory, FilterFactory.class);
registerServiceListener(bc, transformerManager::registerElementTransformerFactory, transformerManager::unregisterElementTransformerFactory, ElementTransformerFactory.class);
registerServiceListener(bc, transformerManager::registerHolisticTransformerFactory, transformerManager::unregisterHolisticTransformerFactory, HolisticTransformerFactory.class);
TransformerViewManager transformerViewManager = new TransformerViewManager(transformerManager);
registerServiceListener(bc, transformerViewManager::registerTransformerViewFactory, transformerViewManager::unregisterTransformerViewFactory, TransformerViewFactory.class);
registerService(bc, new CyNetworkSource(), TransformerSource.class, new Properties());
// Filters
registerService(bc, new DegreeFilterFactory(), FilterFactory.class, new Properties());
registerService(bc, new ColumnFilterFactory(), FilterFactory.class, new Properties());
registerService(bc, new TopologyFilterFactory(), FilterFactory.class, new Properties());
registerService(bc, new CompositeFilterFactory<CyNetwork, CyIdentifiable>(CyNetwork.class, CyIdentifiable.class), FilterFactory.class, new Properties());
// Transformers
registerService(bc, new InteractionTransformerFactory(), ElementTransformerFactory.class, new Properties());
registerService(bc, new AdjacencyTransformerFactory(), ElementTransformerFactory.class, new Properties());
ModelMonitor modelMonitor = new ModelMonitor();
registerAllServices(bc, modelMonitor, new Properties());
ValidationManager validationManager = new ValidationManager();
registerAllServices(bc, validationManager, new Properties());
FilterPanelStyle style = new FlatStyle();
registerService(bc, new DegreeFilterViewFactory(style, modelMonitor), TransformerViewFactory.class, new Properties());
registerService(bc, new ColumnFilterViewFactory(style, modelMonitor, serviceRegistrar), TransformerViewFactory.class, new Properties());
registerService(bc, new TopologyFilterViewFactory(style), TransformerViewFactory.class, TopologyFilterViewFactory.getServiceProperties());
registerService(bc, new InteractionTransformerViewFactory(style), TransformerViewFactory.class, new Properties());
registerService(bc, new AdjacencyTransformerViewFactory(style, serviceRegistrar), TransformerViewFactory.class, AdjacencyTransformerViewFactory.getServiceProperties());
LazyWorkQueue queue = new LazyWorkQueue();
FilterIO filterIo = new FilterIO(serviceRegistrar);
FilterWorker filterWorker = new FilterWorker(queue, serviceRegistrar);
FilterPanelController filterPanelController = new FilterPanelController(transformerManager, transformerViewManager, validationManager, filterWorker, modelMonitor, filterIo, style, serviceRegistrar);
FilterPanel filterPanel = new FilterPanel(filterPanelController, filterWorker, serviceRegistrar);
TransformerWorker transformerWorker = new TransformerWorker(queue, transformerManager, serviceRegistrar);
TransformerPanelController transformerPanelController = new TransformerPanelController(transformerManager, transformerViewManager, validationManager, filterPanelController, transformerWorker, filterIo, style, serviceRegistrar);
TransformerPanel transformerPanel = new TransformerPanel(transformerPanelController, transformerWorker, serviceRegistrar);
CytoPanelComponent selectPanel = new FilterCytoPanelComponent(transformerViewManager, modelMonitor, filterPanel, transformerPanel);
registerService(bc, selectPanel, CytoPanelComponent.class, new Properties());
FilterSettingsManager settingsManager = new FilterSettingsManager(filterPanel, transformerPanel, filterIo);
registerService(bc, settingsManager, SessionAboutToBeSavedListener.class, new Properties());
registerService(bc, settingsManager, SessionAboutToBeLoadedListener.class, new Properties());
registerService(bc, settingsManager, SessionLoadedListener.class, new Properties());
// new TransformerPanelManager API
{
Properties props = new Properties();
props.setProperty("service.type", "manager");
props.setProperty("container.type", "filter");
registerService(bc, filterPanel, TransformerContainer.class, props);
}
{
Properties props = new Properties();
props.setProperty("service.type", "manager");
props.setProperty("container.type", "chain");
registerService(bc, transformerPanel, TransformerContainer.class, props);
}
// commands
{
Properties props = new Properties();
props.setProperty(COMMAND, "import");
props.setProperty(COMMAND_NAMESPACE, "filter");
props.setProperty(COMMAND_DESCRIPTION, "Import filter JSON from a file.");
props.setProperty(COMMAND_LONG_DESCRIPTION, "Import filter JSON from a file.");
registerService(bc, new ImportNamedTransformersTaskFactory(filterIo, filterPanel), TaskFactory.class, props);
}
{
Properties props = new Properties();
props.setProperty(COMMAND, "export");
props.setProperty(COMMAND_NAMESPACE, "filter");
props.setProperty(COMMAND_DESCRIPTION, "Export filter JSON to a file.");
props.setProperty(COMMAND_LONG_DESCRIPTION, "Export filter JSON to a file.");
registerService(bc, new ExportNamedTransformersTaskFactory(filterIo, filterPanelController), TaskFactory.class, props);
}
}
use of org.cytoscape.filter.internal.view.FilterPanel in project cytoscape-impl by cytoscape.
the class UiScaffold method start.
void start() {
MockitoAnnotations.initMocks(this);
Random random = new Random(0);
NetworkTestSupport networkTestSupport = new NetworkTestSupport();
CyNetwork network = networkTestSupport.getNetwork();
CyTable nodeTable = network.getDefaultNodeTable();
nodeTable.createColumn("Score", Double.class, false);
nodeTable.createColumn("IsSpecial", Boolean.class, false);
for (int i = 0; i < TOTAL_NODES; i++) {
CyNode node = network.addNode();
network.getRow(node).set("Score", random.nextGaussian());
network.getRow(node).set("IsSpecial", i % 2 == 0);
}
List<CyNode> nodes = network.getNodeList();
for (int i = 0; i < TOTAL_EDGES; i++) {
CyNode source = nodes.get(random.nextInt(nodes.size()));
CyNode target = nodes.get(random.nextInt(nodes.size()));
network.addEdge(source, target, false);
}
when(applicationManager.getCurrentNetworkView()).thenReturn(networkView);
when(applicationManager.getCurrentNetwork()).thenReturn(network);
when(networkView.getModel()).thenReturn(network);
when(serviceRegistrar.getService(CyApplicationManager.class)).thenReturn(applicationManager);
when(serviceRegistrar.getService(TaskManager.class)).thenReturn(taskManager);
when(serviceRegistrar.getService(IconManager.class)).thenReturn(iconManager);
JFrame frame = new JFrame();
frame.setTitle("Select");
Map<String, String> properties = Collections.emptyMap();
TransformerManagerImpl transformerManager = new TransformerManagerImpl();
transformerManager.registerFilterFactory(new ColumnFilterFactory(), properties);
transformerManager.registerFilterFactory(new DegreeFilterFactory(), properties);
transformerManager.registerFilterFactory(new TopologyFilterFactory(), properties);
transformerManager.registerElementTransformerFactory(new InteractionTransformerFactory(), properties);
ModelMonitor modelMonitor = new ModelMonitor();
modelMonitor.handleEvent(new SetCurrentNetworkEvent(applicationManager, network));
ValidationManager validationManager = new ValidationManager();
FilterPanelStyle style = new StandardStyle();
TransformerViewManager transformerViewManager = new TransformerViewManager(transformerManager);
// transformerViewManager.registerTransformerViewFactory(new ColumnFilterViewFactory(style, modelMonitor), properties);
transformerViewManager.registerTransformerViewFactory(new DegreeFilterViewFactory(style, modelMonitor), properties);
transformerViewManager.registerTransformerViewFactory(new TopologyFilterViewFactory(style), properties);
transformerViewManager.registerTransformerViewFactory(new InteractionTransformerViewFactory(style), properties);
LazyWorkQueue queue = new LazyWorkQueue();
FilterWorker filterWorker = new FilterWorker(queue, serviceRegistrar);
FilterIO filterIo = null;
FilterPanelController filterPanelController = new FilterPanelController(transformerManager, transformerViewManager, validationManager, filterWorker, modelMonitor, filterIo, style, serviceRegistrar);
FilterPanel filterPanel = new FilterPanel(filterPanelController, filterWorker, serviceRegistrar);
TransformerWorker transformerWorker = new TransformerWorker(queue, transformerManager, serviceRegistrar);
TransformerPanelController transformerPanelController = new TransformerPanelController(transformerManager, transformerViewManager, validationManager, filterPanelController, transformerWorker, filterIo, style, serviceRegistrar);
TransformerPanel transformerPanel = new TransformerPanel(transformerPanelController, transformerWorker, serviceRegistrar);
SelectPanel selectPanel = new SelectPanel(filterPanel, transformerPanel);
JRootPane root = frame.getRootPane();
root.setLayout(new GridBagLayout());
root.add(selectPanel, new GridBagConstraints(0, 0, 1, 1, 1, 1, GridBagConstraints.LINE_START, GridBagConstraints.BOTH, new Insets(0, 0, 0, 0), 0, 0));
frame.setSize(450, 500);
frame.setLocationRelativeTo(null);
frame.setVisible(true);
}
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