Examples with Aggregator org.cytoscape.group.data.Aggregator used on opensource projects

Example 1 with Aggregator

use of org.cytoscape.group.data.Aggregator in project cytoscape-impl by cytoscape.

the class CyGroupSettingsTask method run.

// Our "Task" is to read the information from our settings sub-objects
// and set the context object
public void run(TaskMonitor taskMonitor) {
    // Update view settings
    settings.setDoubleClickAction(group, viewSettings.getDoubleClickAction());
    settings.setUseNestedNetworks(group, viewSettings.useNestedNetworks());
    settings.setGroupViewType(group, viewSettings.getGroupViewType());
    // settings.setGroupNodeOpacity(group, viewSettings.getGroupNodeOpacity());
    // Update aggregation settings (more complicated)
    boolean enabled = aggregationSettings.getAttributeAggregationEnabled();
    settings.setEnableAttributeAggregation(group, enabled);
    if (!enabled)
        return;
    // Get the default values for each class we've registered
    for (Class<?> c : cyAggManager.getSupportedClasses()) {
        Aggregator<?> a = aggregationSettings.getDefaultAggregator(c);
        if (group != null)
            settings.setDefaultAggregation(group, c, a);
        else
            settings.setDefaultAggregation(c, a);
    }
    for (Class<?> c : cyAggManager.getSupportedListClasses()) {
        Aggregator<?> a = aggregationSettings.getDefaultListAggregator(c);
        if (group != null)
            settings.setDefaultListAggregation(group, c, a);
        else
            settings.setDefaultListAggregation(c, a);
    }
    // Get any overrides
    Map<CyColumn, Aggregator<?>> overrides = aggregationSettings.getOverrideMap();
    for (CyColumn column : overrides.keySet()) {
        if (group != null)
            settings.setOverrideAggregation(group, column, overrides.get(column));
        else
            settings.setOverrideAggregation(column, overrides.get(column));
    }
}

Example 2 with Aggregator

use of org.cytoscape.group.data.Aggregator in project cytoscape-impl by cytoscape.

the class CyGroupSettingsImpl method handleEvent.

// Update all of our maps when we add a new group
public void handleEvent(GroupAddedEvent e) {
    CyGroup addedGroup = e.getGroup();
    Map<Class<?>, Aggregator<?>> defMap = new HashMap<>();
    Map<Class<?>, Aggregator<?>> defListMap = new HashMap<>();
    CyNetwork network = appMgr.getCurrentNetwork();
    if (network == null || !addedGroup.isInNetwork(network)) {
        for (CyNetwork net : addedGroup.getNetworkSet()) {
            network = net;
            break;
        }
    }
    synchronized (lock) {
        for (Class<?> cKey : allGroupDefaultMap.keySet()) defMap.put(cKey, allGroupDefaultMap.get(cKey));
        for (Class<?> cKey : allGroupListDefaultMap.keySet()) defListMap.put(cKey, allGroupListDefaultMap.get(cKey));
        Map<CyColumn, Aggregator<?>> ovMap = new HashMap<CyColumn, Aggregator<?>>();
        for (CyColumn cKey : allGroupOverrideMap.keySet()) ovMap.put(cKey, allGroupOverrideMap.get(cKey));
        groupMap.put(addedGroup, new GroupSpecificMaps(defMap, defListMap, ovMap));
    }
    // Now override these with any settings from the table
    // Flag to indicate that we don't want to trigger visualization changes
    loadingNewGroup = true;
    try {
        loadSettingsFromTable(addedGroup, network);
    } catch (Exception ex) {
        ex.printStackTrace();
    }
    loadingNewGroup = false;
}

Example 3 with Aggregator

use of org.cytoscape.group.data.Aggregator in project cytoscape-impl by cytoscape.

the class CyGroupSettingsImpl method updateSettingsInTable.

/**
 *************************************************************************
 *        Group-specific settings serialization/deserialization            *
 *************************************************************************
 */
/**
 * Update the settings for a specific group
 */
public void updateSettingsInTable(CyGroup group) {
    CyNetwork network = appMgr.getCurrentNetwork();
    if (network == null || !group.isInNetwork(network)) {
        for (CyNetwork net : group.getNetworkSet()) {
            network = net;
            break;
        }
    }
    List<String> viewSettings = new ArrayList<>();
    // Update all of our view settings as a list
    createColumnIfNeeded(network, group.getGroupNode(), VIEW_SETTINGS, List.class, String.class);
    addViewSetting(viewSettings, DOUBLE_CLICK_ACTION, getDoubleClickAction(group).toString());
    addViewSetting(viewSettings, USE_NESTED_NETWORKS, "" + getUseNestedNetworks(group));
    addViewSetting(viewSettings, GROUP_VIEW_TYPE, "" + getGroupViewType(group));
    addViewSetting(viewSettings, GROUP_NODE_OPACITY, "" + getGroupNodeOpacity(group));
    // currentNetwork.getRow(group.getGroupNode(), CyNetwork.HIDDEN_ATTRS).set(VIEW_SETTINGS, viewSettings);
    network.getRow(group.getGroupNode()).set(VIEW_SETTINGS, viewSettings);
    // Update default aggregations
    createColumnIfNeeded(network, group.getGroupNode(), AGGREGATION_SETTINGS, List.class, String.class);
    List<String> aggrSettings = new ArrayList<>();
    aggrSettings.add(AGG_ENABLED + "=" + getEnableAttributeAggregation(group));
    addAggregationSetting(group, DEFAULT_INT_AGGREGATION, Integer.class, null, aggrSettings);
    addAggregationSetting(group, DEFAULT_LONG_AGGREGATION, Long.class, null, aggrSettings);
    addAggregationSetting(group, DEFAULT_DOUBLE_AGGREGATION, Double.class, null, aggrSettings);
    addAggregationSetting(group, DEFAULT_STRING_AGGREGATION, String.class, null, aggrSettings);
    addAggregationSetting(group, DEFAULT_BOOLEAN_AGGREGATION, Boolean.class, null, aggrSettings);
    addAggregationSetting(group, DEFAULT_STRING_LIST_AGGREGATION, List.class, String.class, aggrSettings);
    addAggregationSetting(group, DEFAULT_INTEGER_LIST_AGGREGATION, List.class, Integer.class, aggrSettings);
    addAggregationSetting(group, DEFAULT_LONG_LIST_AGGREGATION, List.class, Long.class, aggrSettings);
    addAggregationSetting(group, DEFAULT_DOUBLE_LIST_AGGREGATION, List.class, Double.class, aggrSettings);
    // currentNetwork.getRow(group.getGroupNode(), CyNetwork.HIDDEN_ATTRS).set(AGGREGATION_SETTINGS, aggrSettings);
    network.getRow(group.getGroupNode()).set(AGGREGATION_SETTINGS, aggrSettings);
    if (groupMap.containsKey(group)) {
        // Update overrides
        createColumnIfNeeded(network, group.getGroupNode(), AGGREGATION_OVERRIDE_SETTINGS, List.class, String.class);
        List<String> aggrOverrideSettings = new ArrayList<>();
        GroupSpecificMaps gsm = groupMap.get(group);
        Map<CyColumn, Aggregator<?>> overrides = groupMap.get(group).getOverrides();
        if (overrides == null || overrides.size() == 0)
            return;
        for (CyColumn column : overrides.keySet()) {
            aggrOverrideSettings.add(column.getName() + "=" + overrides.get(column).toString());
        }
        // currentNetwork.getRow(group.getGroupNode(), CyNetwork.HIDDEN_ATTRS).set(AGGREGATION_OVERRIDE_SETTINGS, aggrOverrideSettings);
        network.getRow(group.getGroupNode()).set(AGGREGATION_OVERRIDE_SETTINGS, aggrOverrideSettings);
    }
}