Examples with Key org.cytoscape.group.internal.LockedVisualPropertiesManager.Key used on opensource projects

Example 1 with Key

use of org.cytoscape.group.internal.LockedVisualPropertiesManager.Key in project cytoscape-impl by cytoscape.

the class GroupIO method writeLockedVisualPropertiesMap.

private void writeLockedVisualPropertiesMap(final File file, final Set<CyGroup> groups) throws JsonGenerationException, JsonMappingException, IOException {
    final CyNetworkViewManager netViewMgr = groupMgr.getService(CyNetworkViewManager.class);
    final Set<CyIdentifiable> grElements = new HashSet<>();
    for (final CyGroup gr : groups) {
        final Set<CyNetworkView> netViews = new HashSet<>();
        final Set<CyNetwork> networks = gr.getNetworkSet();
        for (final CyNetwork net : networks) {
            if (netViewMgr.viewExists(net))
                netViews.addAll(netViewMgr.getNetworkViews(net));
        }
        if (netViews.isEmpty())
            continue;
        grElements.add(gr.getGroupNode());
        grElements.addAll(gr.getRootNetwork().getAdjacentEdgeList(gr.getGroupNode(), CyEdge.Type.ANY));
        grElements.addAll(gr.getNodeList());
        grElements.addAll(gr.getExternalEdgeList());
        grElements.addAll(gr.getInternalEdgeList());
        for (final CyIdentifiable element : grElements) lvpMgr.saveLockedValues(element, netViews);
    }
    final Map<Key, Map<VisualProperty<?>, Object>> map = lvpMgr.getLockedVisualPropertiesMap();
    if (map != null)
        mapper.writeValue(file, map);
}

Example 2 with Key

use of org.cytoscape.group.internal.LockedVisualPropertiesManager.Key in project cytoscape-impl by cytoscape.

the class GroupIO method handleEvent.

@Override
public void handleEvent(final SessionLoadedEvent event) {
    final List<File> files = event.getLoadedSession().getAppFileListMap().get(NAMESPACE);
    if (files == null)
        return;
    final CySession session = event.getLoadedSession();
    for (final File file : files) {
        try {
            if (file.getName().equals(FILENAME)) {
                final Map<Key, Map<VisualProperty<?>, Object>> map = readLockedVisualPropertiesMap(file, session);
                lvpMgr.addAll(map);
            }
        } catch (IOException e) {
            logger.error("Unexpected error", e);
        }
    }
    settingsMgr.loadProperties();
}

Example 3 with Key

use of org.cytoscape.group.internal.LockedVisualPropertiesManager.Key in project cytoscape-impl by cytoscape.

the class GroupIO method readLockedVisualPropertiesMap.

private Map<Key, Map<VisualProperty<?>, Object>> readLockedVisualPropertiesMap(final File file, final CySession session) throws JsonParseException, JsonMappingException, IOException {
    final Map<Key, Map<VisualProperty<?>, Object>> map = new LinkedHashMap<>();
    final JsonFactory factory = mapper.getFactory();
    final JsonParser parser = factory.createParser(file);
    try {
        if (parser.nextToken() != JsonToken.START_ARRAY)
            return map;
        while (parser.nextToken() != JsonToken.END_ARRAY) {
            if (parser.getCurrentToken() != JsonToken.START_OBJECT)
                continue;
            CyNetworkView netView = null;
            Class<? extends CyIdentifiable> elementType = null;
            long elementId = -1;
            final Map<VisualProperty<?>, Object> lockedValues = new LinkedHashMap<>();
            while (parser.nextToken() != JsonToken.END_OBJECT) {
                if (parser.getCurrentToken() != JsonToken.FIELD_NAME)
                    continue;
                final String fieldName = parser.getCurrentName();
                final JsonToken valueToken = parser.nextToken();
                if ("networkView".equals(fieldName) && valueToken == JsonToken.VALUE_NUMBER_INT) {
                    final long suid = parser.getLongValue();
                    netView = session.getObject(suid, CyNetworkView.class);
                } else if ("element".equals(fieldName) && valueToken == JsonToken.VALUE_NUMBER_INT) {
                    elementId = parser.getLongValue();
                } else if ("elementType".equals(fieldName) && valueToken == JsonToken.VALUE_STRING) {
                    elementType = parser.getText().equalsIgnoreCase("CyNode") ? CyNode.class : CyEdge.class;
                } else if ("lockedValues".equals(fieldName) && valueToken == JsonToken.START_ARRAY) {
                    final VisualLexicon lexicon = getVisualLexicon(netView);
                    parseLockedValues(parser, lockedValues, lexicon, elementType);
                }
            }
            if (netView != null && elementId != -1 && elementType != null) {
                final CyIdentifiable element = session.getObject(elementId, elementType);
                if (element != null && !lockedValues.isEmpty()) {
                    final Key key = new Key(netView, element);
                    map.put(key, lockedValues);
                }
            }
        }
    } finally {
        parser.close();
    }
    return map;
}

Example 4 with Key

use of org.cytoscape.group.internal.LockedVisualPropertiesManager.Key in project cytoscape-impl by cytoscape.

the class LockedVisualPropertiesManager method add.

public void add(final CyIdentifiable element, final CyNetworkView netView, final Map<VisualProperty<?>, Object> lockedValues) {
    if (element != null && netView != null) {
        final Key key = new Key(netView, element);
        add(key, lockedValues);
    }
}

Example 5 with Key

use of org.cytoscape.group.internal.LockedVisualPropertiesManager.Key in project cytoscape-impl by cytoscape.

the class LockedVisualPropertiesManager method setLockedValues.

public void setLockedValues(final Collection<CyNetworkView> netViewList, final Set<CyIdentifiable> elements) {
    for (final CyNetworkView netView : netViewList) {
        for (final CyIdentifiable element : elements) {
            final View<? extends CyIdentifiable> view = GroupUtil.getView(netView, element);
            if (view == null)
                continue;
            final Key key = new Key(netView, element);
            final Map<VisualProperty<?>, Object> lockedValues = bypassMap.get(key);
            if (lockedValues != null) {
                for (final Entry<VisualProperty<?>, Object> entry : lockedValues.entrySet()) view.setLockedValue(entry.getKey(), entry.getValue());
            }
        }
    }
}