Examples with CytoscapeDesktop org.cytoscape.internal.view.CytoscapeDesktop used on opensource projects

Example 1 with CytoscapeDesktop

use of org.cytoscape.internal.view.CytoscapeDesktop in project cytoscape-impl by cytoscape.

the class CyActivator method initComponents.

private void initComponents(final BundleContext bc, final CyServiceRegistrar serviceRegistrar) {
    CyApplicationManager applicationManager = getService(bc, CyApplicationManager.class);
    CyNetworkViewManager netViewManager = getService(bc, CyNetworkViewManager.class);
    final CytoscapeMenuBar cytoscapeMenuBar = new CytoscapeMenuBar(serviceRegistrar);
    final CytoscapeToolBar cytoscapeToolBar = new CytoscapeToolBar(serviceRegistrar);
    cytoscapeMenus = new CytoscapeMenus(cytoscapeMenuBar, cytoscapeToolBar);
    toolBarEnableUpdater = new ToolBarEnableUpdater(cytoscapeToolBar, serviceRegistrar);
    netSearchBar = new NetworkSearchBar(serviceRegistrar);
    netSearchMediator = new NetworkSearchMediator(netSearchBar, serviceRegistrar);
    netMainPanel = new NetworkMainPanel(netSearchBar, serviceRegistrar);
    netMediator = new NetworkMediator(netMainPanel, serviceRegistrar);
    commandToolPanel = new CommandToolDialog(serviceRegistrar);
    viewComparator = new ViewComparator(netMainPanel);
    gridViewToggleModel = new GridViewToggleModel(GridViewToggleModel.Mode.VIEW);
    netViewMainPanel = new NetworkViewMainPanel(gridViewToggleModel, cytoscapeMenus, viewComparator, serviceRegistrar);
    netViewMediator = new NetworkViewMediator(netViewMainPanel, netMediator, gridViewToggleModel, serviceRegistrar);
    cytoscapeDesktop = new CytoscapeDesktop(cytoscapeMenus, netViewMediator, serviceRegistrar);
    final SessionIO sessionIO = new SessionIO();
    sessionHandler = new SessionHandler(cytoscapeDesktop, netViewMediator, sessionIO, netMainPanel, serviceRegistrar);
    layoutMenuPopulator = new LayoutMenuPopulator(cytoscapeMenuBar, serviceRegistrar);
    cytoscapeMenuPopulator = new CytoscapeMenuPopulator(cytoscapeDesktop, serviceRegistrar);
    layoutSettingsManager = new LayoutSettingsManager(serviceRegistrar);
    helpUserManualTaskFactory = new HelpUserManualTaskFactory(serviceRegistrar);
    helpContactHelpDeskTaskFactory = new HelpContactHelpDeskTaskFactory(serviceRegistrar);
    helpReportABugTaskFactory = new HelpReportABugTaskFactory(serviceRegistrar);
    helpAboutTaskFactory = new HelpAboutTaskFactory(serviceRegistrar);
    cyDesktopManager = new CyDesktopManager(netViewMediator);
    arrangeGridTaskFactory = new ArrangeTaskFactory(GRID, cyDesktopManager, netViewMediator);
    arrangeCascadeTaskFactory = new ArrangeTaskFactory(CASCADE, cyDesktopManager, netViewMediator);
    arrangeHorizontalTaskFactory = new ArrangeTaskFactory(HORIZONTAL, cyDesktopManager, netViewMediator);
    arrangeVerticalTaskFactory = new ArrangeTaskFactory(VERTICAL, cyDesktopManager, netViewMediator);
    preferencesDialogFactory = new PreferencesDialogFactory(serviceRegistrar);
    // cy3preferencesDialogFactory = new Cy3PreferencesDialogFactory(serviceRegistrar);
    bookmarkDialogFactory = new BookmarkDialogFactory(serviceRegistrar);
    undoMonitor = new UndoMonitor(serviceRegistrar);
    rowViewTracker = new RowViewTracker();
    selecteEdgeViewUpdater = new SelectEdgeViewUpdater(rowViewTracker);
    selecteNodeViewUpdater = new SelectNodeViewUpdater(rowViewTracker);
    rowsSetViewUpdater = new RowsSetViewUpdater(rowViewTracker, netViewMediator, serviceRegistrar);
    recentSessionManager = new RecentSessionManager(serviceRegistrar);
    netSelectionMediator = new NetworkSelectionMediator(netMainPanel, netViewMainPanel, serviceRegistrar);
    // /// CyActions ////
    undoAction = new UndoAction(serviceRegistrar);
    redoAction = new RedoAction(serviceRegistrar);
    printAction = new PrintAction(applicationManager, netViewManager, serviceRegistrar);
    exitAction = new ExitAction(serviceRegistrar);
    // cy3preferenceAction = new Cy3PreferenceAction(cytoscapeDesktop, cy3preferencesDialogFactory);
    preferenceAction = new PreferenceAction(cytoscapeDesktop, preferencesDialogFactory);
    bookmarkAction = new BookmarkAction(cytoscapeDesktop, bookmarkDialogFactory);
    settingsAction = new SettingsAction(layoutSettingsManager, serviceRegistrar);
    cytoPanelWestAction = new CytoPanelAction(WEST, true, cytoscapeDesktop, 1.0f);
    cytoPanelSouthAction = new CytoPanelAction(SOUTH, true, cytoscapeDesktop, 1.1f);
    cytoPanelEastAction = new CytoPanelAction(EAST, false, cytoscapeDesktop, 1.2f);
    cytoPanelSouthWestAction = new CytoPanelAction(SOUTH_WEST, false, cytoscapeDesktop, 1.3f);
    cytoPanelCommandAction = new CytoPanelAction(BOTTOM, false, cytoscapeDesktop, 1.35f);
    starterPanelAction = new StarterPanelAction(1.4f, cytoscapeDesktop);
    detachedViewToolBarAction = new DetachedViewToolBarAction(1.5f, netViewMediator);
    closeWindowAction = new CloseWindowAction(6.1f, netViewMediator);
    createNetworkViewsAction = new CreateNetworkViewsAction(3.0f, serviceRegistrar);
    destroyNetworkViewsAction = new DestroyNetworkViewsAction(3.1f, serviceRegistrar);
    destroyNetworksAction = new DestroyNetworksAction(3.2f, netMainPanel, serviceRegistrar);
    exportNetworkAction = new ExportNetworkAction(1000.1f, serviceRegistrar);
    exportImageAction = new ExportImageAction(1000.2f, serviceRegistrar);
}