Examples with CyNetworkManager org.cytoscape.model.CyNetworkManager used on opensource projects

Example 16 with CyNetworkManager

use of org.cytoscape.model.CyNetworkManager in project clusterMaker2 by RBVI.

the class ModelUtils method createChildNetwork.

public static CyNetwork createChildNetwork(ClusterManager manager, CyNetwork network, List<CyNode> nodeList, List<CyEdge> edgeList, String title) {
    String name = network.getRow(network).get(CyNetwork.NAME, String.class);
    // Create the network;
    CyNetwork newNetwork = ((CySubNetwork) network).getRootNetwork().addSubNetwork(nodeList, edgeList);
    // Register the network
    CyNetworkManager netManager = manager.getService(CyNetworkManager.class);
    netManager.addNetwork(newNetwork);
    // Set the title
    newNetwork.getRow(newNetwork).set(CyNetwork.NAME, name + title);
    return newNetwork;
}

Example 17 with CyNetworkManager

use of org.cytoscape.model.CyNetworkManager in project cytoscape-api by cytoscape.

the class AbstractNetworkEventTest method testGetNetwork.

@Test
public final void testGetNetwork() {
    final CyNetworkManager networkManager = mock(CyNetworkManager.class);
    final CyNetwork network = mock(CyNetwork.class);
    final AbstractNetworkEvent event = new AbstractNetworkEvent(networkManager, Object.class, network);
    assertEquals("Network returned by getNetwork() is *not* the one passed into the constructor!", network, event.getNetwork());
}

Example 18 with CyNetworkManager

use of org.cytoscape.model.CyNetworkManager in project cytoscape-api by cytoscape.

the class NetworkAddedEventTest method testGetNetwork.

@Test
public final void testGetNetwork() {
    final CyNetworkManager networkManager = mock(CyNetworkManager.class);
    final CyNetwork network = mock(CyNetwork.class);
    final NetworkAddedEvent event = new NetworkAddedEvent(networkManager, network);
    assertEquals("Network returned by getNetwork() is *not* the one passed into the constructor!", network, event.getNetwork());
}

Example 19 with CyNetworkManager

use of org.cytoscape.model.CyNetworkManager in project cytoscape-api by cytoscape.

the class NetworkAddedEventTest method testNullNetworkConstructorFailure.

@Test
public final void testNullNetworkConstructorFailure() {
    final CyNetworkManager networkManager = mock(CyNetworkManager.class);
    try {
        final NetworkAddedEvent event = new NetworkAddedEvent(networkManager, null);
    } catch (final NullPointerException e) {
        return;
    }
    fail("The expected NullPointerException was *not* triggered!");
}

Example 20 with CyNetworkManager

use of org.cytoscape.model.CyNetworkManager in project EnrichmentMapApp by BaderLab.

the class EnrichmentMap method getName.

public String getName() {
    final String undefined = "-- UNDEFINED --";
    if (serviceRegistrar == null)
        return undefined;
    CyNetworkManager networkManager = serviceRegistrar.getService(CyNetworkManager.class);
    if (networkManager == null)
        return undefined;
    CyNetwork net = networkManager.getNetwork(networkID);
    if (net == null)
        return undefined;
    return NetworkUtil.getName(net);
}