use of org.cytoscape.task.EdgeViewTaskFactory in project cytoscape-impl by cytoscape.
the class LinkOut method handleEvent.
@Override
public void handleEvent(final PropertyUpdatedEvent e) {
if (e.getSource() == null || e.getSource().getName() == null)
return;
SwingUtilities.invokeLater(new Runnable() {
@Override
public void run() {
final OpenBrowser browser = registrar.getService(OpenBrowser.class);
if (// when linkout prop is changed
e.getSource().getName().equals("linkout")) {
final Properties props = (Properties) e.getSource().getProperties();
List<String> removedLinks = new ArrayList<>();
for (String propKey : propKey2EdgeVTF.keySet()) {
if (props.keySet().contains(propKey)) {
String url = props.getProperty(propKey);
EdgeLinkoutTaskFactory eltf = propKey2EdgeVTF.get(propKey);
if (!url.equals(eltf.getLink())) {
// linkout is modified
eltf.setLink(url);
propKey2EdgeVTF.put(propKey, eltf);
}
} else {
// linkout is removed
EdgeLinkoutTaskFactory eltf = propKey2EdgeVTF.get(propKey);
registrar.unregisterService(eltf, EdgeViewTaskFactory.class);
removedLinks.add(propKey);
}
}
for (String propKey : propKey2NodeVTF.keySet()) {
if (props.keySet().contains(propKey)) {
String url = props.getProperty(propKey);
NodeLinkoutTaskFactory nltf = propKey2NodeVTF.get(propKey);
if (!url.equals(nltf.getLink())) {
// linkout is modified
nltf.setLink(url);
propKey2NodeVTF.put(propKey, nltf);
}
} else {
// linkout is removed
NodeLinkoutTaskFactory nltf = propKey2NodeVTF.get(propKey);
registrar.unregisterService((NodeViewTaskFactory) nltf, NodeViewTaskFactory.class);
removedLinks.add(propKey);
}
}
for (String propkey : removedLinks) {
propKey2EdgeVTF.remove(propkey);
propKey2NodeVTF.remove(propkey);
}
try {
for (Object pk : props.keySet()) {
// added edge linkouts
String propKey = pk.toString();
if (propKey2EdgeVTF.containsKey(propKey))
continue;
String url = props.getProperty(propKey);
Properties dict = createProperties(propKey, EDGEMARKER);
if (url == null || dict == null) {
logger.debug("Bad URL for propKey: " + propKey);
continue;
}
EdgeViewTaskFactory evtf = new EdgeLinkoutTaskFactory(browser, url);
registrar.registerService(evtf, EdgeViewTaskFactory.class, dict);
propKey2EdgeVTF.put(propKey, (EdgeLinkoutTaskFactory) evtf);
}
for (Object pk : props.keySet()) {
// added node linkouts
String propKey = pk.toString();
if (propKey2NodeVTF.containsKey(propKey))
continue;
String url = props.getProperty(propKey);
Properties dict = createProperties(propKey, NODEMARKER);
if (url == null || dict == null) {
logger.debug("Bad URL for propKey: " + propKey);
continue;
}
NodeViewTaskFactory nvtf = new NodeLinkoutTaskFactory(browser, url);
registrar.registerService(nvtf, NodeViewTaskFactory.class, dict);
propKey2NodeVTF.put(propKey, (NodeLinkoutTaskFactory) nvtf);
}
} catch (Exception ex) {
logger.warn("Problem processing node URLs", ex);
}
} else if (e.getSource().getName().equals("commandline")) {
// when commandline linkout prop is changed
final Properties props = (Properties) e.getSource().getProperties();
List<String> removedLinks = new ArrayList<>();
for (String propKey : cpropKey2EdgeVTF.keySet()) {
if (props.keySet().contains(propKey)) {
String url = props.getProperty(propKey);
EdgeLinkoutTaskFactory eltf = cpropKey2EdgeVTF.get(propKey);
if (!url.equals(eltf.getLink())) {
// linkout is modified
eltf.setLink(url);
cpropKey2EdgeVTF.put(propKey, eltf);
}
} else {
// linkout is removed
EdgeLinkoutTaskFactory eltf = cpropKey2EdgeVTF.get(propKey);
registrar.unregisterService(eltf, EdgeViewTaskFactory.class);
removedLinks.add(propKey);
}
}
for (String propKey : cpropKey2NodeVTF.keySet()) {
if (props.keySet().contains(propKey)) {
String url = props.getProperty(propKey);
NodeLinkoutTaskFactory nltf = cpropKey2NodeVTF.get(propKey);
if (!url.equals(nltf.getLink())) {
// linkout is modified
nltf.setLink(url);
cpropKey2NodeVTF.put(propKey, nltf);
}
} else {
// linkout is removed
NodeLinkoutTaskFactory nltf = cpropKey2NodeVTF.get(propKey);
registrar.unregisterService((NodeViewTaskFactory) nltf, NodeViewTaskFactory.class);
removedLinks.add(propKey);
}
}
for (String propkey : removedLinks) {
cpropKey2EdgeVTF.remove(propkey);
cpropKey2NodeVTF.remove(propkey);
}
try {
for (Object pk : props.keySet()) {
// added edge linkouts
String propKey = pk.toString();
if (cpropKey2EdgeVTF.containsKey(propKey))
continue;
String url = props.getProperty(propKey);
Properties dict = createProperties(propKey, EDGEMARKER);
if (url == null || dict == null) {
logger.debug("Bad URL for propKey: " + propKey);
continue;
}
EdgeViewTaskFactory evtf = new EdgeLinkoutTaskFactory(browser, url);
registrar.registerService(evtf, EdgeViewTaskFactory.class, dict);
cpropKey2EdgeVTF.put(propKey, (EdgeLinkoutTaskFactory) evtf);
}
for (Object pk : props.keySet()) {
// added node linkouts
String propKey = pk.toString();
if (cpropKey2NodeVTF.containsKey(propKey))
continue;
String url = props.getProperty(propKey);
Properties dict = createProperties(propKey, NODEMARKER);
if (url == null || dict == null) {
logger.debug("Bad URL for propKey: " + propKey);
continue;
}
NodeViewTaskFactory nvtf = new NodeLinkoutTaskFactory(browser, url);
registrar.registerService(nvtf, NodeViewTaskFactory.class, dict);
cpropKey2NodeVTF.put(propKey, (NodeLinkoutTaskFactory) nvtf);
}
} catch (Exception ex) {
logger.warn("Problem processing node URLs", ex);
}
}
}
});
}
use of org.cytoscape.task.EdgeViewTaskFactory in project cytoscape-impl by cytoscape.
the class CyActivator method start.
@Override
public void start(BundleContext bc) {
final CyServiceRegistrar serviceRegistrar = getService(bc, CyServiceRegistrar.class);
{
// NetworkView (empty space) context menus
SIFInterpreterTaskFactory factory = new SIFInterpreterTaskFactory(serviceRegistrar);
Properties props = new Properties();
props.setProperty(ENABLE_FOR, "networkAndView");
props.setProperty(PREFERRED_ACTION, "NEW");
props.setProperty(PREFERRED_MENU, NETWORK_ADD_MENU);
props.setProperty(MENU_GRAVITY, "1.0");
props.setProperty(IN_MENU_BAR, "false");
props.setProperty(TITLE, "Edge (and possibly Nodes) using SIF...");
registerService(bc, factory, NetworkViewTaskFactory.class, props);
}
{
NetworkViewLocationTaskFactory factory = new AddNodeTaskFactory(serviceRegistrar);
Properties props = new Properties();
props.setProperty(PREFERRED_ACTION, "NEW");
props.setProperty(PREFERRED_MENU, NETWORK_ADD_MENU);
props.setProperty(MENU_GRAVITY, "1.1");
props.setProperty(TITLE, "Node");
registerService(bc, factory, NetworkViewLocationTaskFactory.class, props);
}
// We need a place to hold the objects themselves
ClipboardManagerImpl clipboardManager = new ClipboardManagerImpl(serviceRegistrar);
{
// Copy node
NetworkViewTaskFactory factory = new CopyTaskFactory(clipboardManager);
Properties props = new Properties();
props.setProperty(ENABLE_FOR, "networkAndView");
props.setProperty(PREFERRED_ACTION, "NEW");
props.setProperty(PREFERRED_MENU, NETWORK_EDIT_MENU);
props.setProperty(ACCELERATOR, "cmd c");
props.setProperty(TITLE, "Copy");
props.setProperty(MENU_GRAVITY, "0.0f");
registerService(bc, factory, NetworkViewTaskFactory.class, props);
}
{
// Cut node
NetworkViewTaskFactory factory = new CutTaskFactory(clipboardManager, serviceRegistrar);
Properties props = new Properties();
props.setProperty(ENABLE_FOR, "networkAndView");
props.setProperty(PREFERRED_ACTION, "NEW");
props.setProperty(PREFERRED_MENU, NETWORK_EDIT_MENU);
props.setProperty(ACCELERATOR, "cmd x");
props.setProperty(MENU_GRAVITY, "0.1f");
props.setProperty(TITLE, "Cut");
registerService(bc, factory, NetworkViewTaskFactory.class, props);
}
{
// Paste node
NetworkViewLocationTaskFactory pasteTaskFactory = new PasteTaskFactory(clipboardManager, serviceRegistrar);
Properties props = new Properties();
props.setProperty(ENABLE_FOR, "networkAndView");
props.setProperty(PREFERRED_ACTION, "NEW");
props.setProperty(PREFERRED_MENU, NETWORK_EDIT_MENU);
props.setProperty(TITLE, "Paste");
props.setProperty(MENU_GRAVITY, "0.2f");
props.setProperty(ACCELERATOR, "cmd v");
props.setProperty(IN_MENU_BAR, "true");
registerService(bc, pasteTaskFactory, NetworkViewLocationTaskFactory.class, props);
}
// At some point, add Paste Special. Paste special would allow paste node only, paste copy, etc.
// NodeView context menus
{
// Copy node
NodeViewTaskFactory factory = new CopyNodeTaskFactory(clipboardManager);
Properties props = new Properties();
props.setProperty(PREFERRED_ACTION, "NEW");
props.setProperty(PREFERRED_MENU, NODE_EDIT_MENU);
props.setProperty(ACCELERATOR, "cmd c");
props.setProperty(MENU_GRAVITY, "0.0f");
props.setProperty(TITLE, "Copy");
registerService(bc, factory, NodeViewTaskFactory.class, props);
}
{
// Cut node
NodeViewTaskFactory factory = new CutNodeTaskFactory(clipboardManager, serviceRegistrar);
Properties props = new Properties();
props.setProperty(PREFERRED_ACTION, "NEW");
props.setProperty(PREFERRED_MENU, NODE_EDIT_MENU);
props.setProperty(ACCELERATOR, "cmd x");
props.setProperty(MENU_GRAVITY, "0.1f");
props.setProperty(TITLE, "Cut");
registerService(bc, factory, NodeViewTaskFactory.class, props);
}
{
// Rename node
NodeViewTaskFactory factory = new RenameNodeTaskFactory(serviceRegistrar);
Properties props = new Properties();
props.setProperty(PREFERRED_ACTION, "NEW");
props.setProperty(PREFERRED_MENU, NODE_EDIT_MENU);
props.setProperty(INSERT_SEPARATOR_AFTER, "true");
props.setProperty(MENU_GRAVITY, "0.2f");
props.setProperty(TITLE, "Rename Node");
registerService(bc, factory, NodeViewTaskFactory.class, props);
}
{
NodeViewTaskFactory factory = new AddNestedNetworkTaskFactory(serviceRegistrar);
Properties props = new Properties();
props.setProperty(PREFERRED_ACTION, "NEW");
props.setProperty(PREFERRED_MENU, NODE_NESTED_NETWORKS_MENU);
props.setProperty(MENU_GRAVITY, "0.1f");
props.setProperty(TITLE, "Add Nested Network");
registerService(bc, factory, NodeViewTaskFactory.class, props);
}
{
NodeViewTaskFactory factory = new DeleteNestedNetworkTaskFactory(serviceRegistrar);
Properties props = new Properties();
props.setProperty(PREFERRED_ACTION, "NEW");
props.setProperty(PREFERRED_MENU, NODE_NESTED_NETWORKS_MENU);
props.setProperty(MENU_GRAVITY, "0.2f");
props.setProperty(TITLE, "Remove Nested Network");
registerService(bc, factory, NodeViewTaskFactory.class, props);
}
{
NodeViewTaskFactory factory = new GoToNestedNetworkTaskFactory(serviceRegistrar);
Properties props = new Properties();
props.setProperty(PREFERRED_ACTION, "NEW");
props.setProperty(PREFERRED_MENU, NODE_NESTED_NETWORKS_MENU);
props.setProperty(MENU_GRAVITY, "0.3f");
props.setProperty(TITLE, "Go to Nested Network");
registerService(bc, factory, NodeViewTaskFactory.class, props);
}
// EdgeView context menus
{
// Copy node
EdgeViewTaskFactory factory = new CopyEdgeTaskFactory(clipboardManager);
Properties props = new Properties();
props.setProperty(PREFERRED_ACTION, "NEW");
props.setProperty(PREFERRED_MENU, EDGE_EDIT_MENU);
props.setProperty(ACCELERATOR, "cmd c");
props.setProperty(MENU_GRAVITY, "0.0f");
props.setProperty(TITLE, "Copy");
registerService(bc, factory, EdgeViewTaskFactory.class, props);
}
{
// Cut edge
EdgeViewTaskFactory factory = new CutEdgeTaskFactory(clipboardManager, serviceRegistrar);
Properties props = new Properties();
props.setProperty(PREFERRED_ACTION, "NEW");
props.setProperty(PREFERRED_MENU, EDGE_EDIT_MENU);
props.setProperty(ACCELERATOR, "cmd x");
props.setProperty(MENU_GRAVITY, "0.1f");
props.setProperty(TITLE, "Cut");
registerService(bc, factory, EdgeViewTaskFactory.class, props);
}
}
use of org.cytoscape.task.EdgeViewTaskFactory in project cytoscape-impl by cytoscape.
the class LinkOut method addCommanLineLinkOut.
public void addCommanLineLinkOut(CyProperty<Properties> commandline, Map<?, ?> p) {
if (!"commandline.props".equals(p.get("cyPropertyName")))
return;
Properties props = commandline.getProperties();
final OpenBrowser browser = registrar.getService(OpenBrowser.class);
try {
for (Object pk : props.keySet()) {
String propKey = pk.toString();
String url = props.getProperty(propKey);
Properties dict = createProperties(propKey, EDGEMARKER);
if (url == null || dict == null) {
logger.debug("Bad URL for propKey: " + propKey);
continue;
}
EdgeViewTaskFactory evtf = new EdgeLinkoutTaskFactory(browser, url);
registrar.registerService(evtf, EdgeViewTaskFactory.class, dict);
cpropKey2EdgeVTF.put(propKey, (EdgeLinkoutTaskFactory) evtf);
}
} catch (Exception e) {
logger.warn("Problem processing edge URLs", e);
}
try {
for (Object pk : props.keySet()) {
String propKey = pk.toString();
String url = props.getProperty(propKey);
Properties dict = createProperties(propKey, NODEMARKER);
if (url == null || dict == null) {
logger.debug("Bad URL for propKey: " + propKey);
continue;
}
NodeViewTaskFactory evtf = new NodeLinkoutTaskFactory(browser, url);
registrar.registerService(evtf, NodeViewTaskFactory.class, dict);
cpropKey2NodeVTF.put(propKey, (NodeLinkoutTaskFactory) evtf);
}
} catch (Exception e) {
logger.warn("Problem processing node URLs", e);
}
}
use of org.cytoscape.task.EdgeViewTaskFactory in project cytoscape-impl by cytoscape.
the class LinkOut method addStaticEdgeLinks.
private void addStaticEdgeLinks() {
final Properties props = linkoutProps.getProperties();
final OpenBrowser browser = registrar.getService(OpenBrowser.class);
try {
for (Object pk : props.keySet()) {
String propKey = pk.toString();
String url = props.getProperty(propKey);
Properties dict = createProperties(propKey, EDGEMARKER);
if (url == null || dict == null) {
logger.debug("Bad URL for propKey: " + propKey);
continue;
}
final EdgeViewTaskFactory evtf = new EdgeLinkoutTaskFactory(browser, url);
registrar.registerService(evtf, EdgeViewTaskFactory.class, dict);
propKey2EdgeVTF.put(propKey, (EdgeLinkoutTaskFactory) evtf);
}
} catch (Exception e) {
logger.warn("Problem processing edge URLs", e);
}
}
use of org.cytoscape.task.EdgeViewTaskFactory in project cytoscape-impl by cytoscape.
the class PopupMenuHelper method createEdgeViewMenu.
/**
* Creates a menu based on the EdgeView.
*
* @param action Acceptable values are "NEW" or "OPEN." Case does not matter.
*/
void createEdgeViewMenu(EdgeView edgeView, int x, int y, String action) {
if (edgeView != null) {
Collection<EdgeViewTaskFactory> usableTFs = getPreferredActions(graphView.edgeViewTFs, action);
Collection<CyEdgeViewContextMenuFactory> usableCMFs = getPreferredActions(graphView.cyEdgeViewContextMenuFactory, action);
View<CyEdge> ev = (DEdgeView) edgeView;
// remove TaskFactories that can't be executed from double-click menu
if (action.equalsIgnoreCase("OPEN")) {
Iterator<EdgeViewTaskFactory> i = usableTFs.iterator();
while (i.hasNext()) {
if (!i.next().isReady(ev, graphView))
i.remove();
}
}
int tfCount = usableTFs.size();
int menuItemCount = usableTFs.size() + usableCMFs.size();
if (action.equalsIgnoreCase("OPEN") && menuItemCount == 1 && tfCount == 1) {
EdgeViewTaskFactory tf = usableTFs.iterator().next();
serviceRegistrar.getService(DialogTaskManager.class).execute(tf.createTaskIterator(ev, graphView));
} else {
String edgeLabel = graphView.getModel().getRow(ev.getModel()).get(CyEdge.INTERACTION, String.class);
JPopupMenu menu = createMenu(edgeLabel);
JMenuTracker tracker = new JMenuTracker(menu);
if (!action.equalsIgnoreCase("OPEN")) {
initializeEdgeTracker(tracker);
tracker.getGravityTracker(".").addMenuSeparator(-0.1);
tracker.getGravityTracker(".").addMenuSeparator(999.99);
}
for (EdgeViewTaskFactory evtf : usableTFs) {
Object context = null;
NamedTaskFactory provisioner = factoryProvisioner.createFor(evtf, ev, graphView);
addMenuItem(ev, menu, provisioner, context, tracker, graphView.edgeViewTFs.get(evtf));
}
for (CyEdgeViewContextMenuFactory edgeCMF : usableCMFs) {
// menu.add(edgeCMF.createMenuItem(m_view, ev).getMenuItem());
try {
CyMenuItem menuItem = edgeCMF.createMenuItem(graphView, ev);
addCyMenuItem(ev, menu, menuItem, tracker, graphView.cyEdgeViewContextMenuFactory.get(edgeCMF));
} catch (Throwable t) {
logger.error("Could not display context menu.", t);
}
}
menu.show(invoker, x, y);
}
}
}
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