Examples with TableType org.cytoscape.task.internal.table.ImportTableDataTask.TableType used on opensource projects

Example 1 with TableType

use of org.cytoscape.task.internal.table.ImportTableDataTask.TableType in project cytoscape-impl by cytoscape.

the class ImportTableDataTaskFactoryImpl method createTaskIterator.

@Override
public TaskIterator createTaskIterator(final CyTable globalTable, final boolean selectedNetworksOnly, final boolean loadToUnassignedTable, final List<CyNetwork> networkList, final CyRootNetwork rootNetwork, final CyColumn targetJoinColumn, final Class<? extends CyIdentifiable> type) {
    ListSingleSelection<String> chooser = new ListSingleSelection<String>(ImportTableDataTask.NETWORK_COLLECTION, ImportTableDataTask.NETWORK_SELECTION, ImportTableDataTask.UNASSIGNED_TABLE);
    final Map<String, Object> m = new HashMap<>();
    if (!loadToUnassignedTable) {
        TableType tableType = getTableType(type);
        if (tableType == null)
            throw new IllegalArgumentException("The specified type " + type + " is not acceptable.");
        ListSingleSelection<TableType> tableTypes = new ListSingleSelection<>(tableType);
        tableTypes.setSelectedValue(tableType);
        List<String> networkNames = new ArrayList<String>();
        for (CyNetwork net : networkList) {
            networkNames.add(net.getRow(net).get(CyNetwork.NAME, String.class));
        }
        ListMultipleSelection<String> networksListTunable = new ListMultipleSelection<>(networkNames);
        networksListTunable.setSelectedValues(networkNames);
        List<String> rootNetworkNames = new ArrayList<>();
        ListSingleSelection<String> rootNetworkList = new ListSingleSelection<>();
        if (rootNetwork != null) {
            rootNetworkNames.add(rootNetwork.getRow(rootNetwork).get(CyNetwork.NAME, String.class));
            rootNetworkList = new ListSingleSelection<String>(rootNetworkNames);
            rootNetworkList.setSelectedValue(rootNetworkNames.get(0));
        }
        List<String> columnNames = new ArrayList<String>();
        ListSingleSelection<String> columnNamesList = new ListSingleSelection<>();
        if (targetJoinColumn != null) {
            columnNames.add(targetJoinColumn.getName());
            columnNamesList = new ListSingleSelection<>(columnNames);
            columnNamesList.setSelectedValue(columnNames.get(0));
        }
        if (selectedNetworksOnly) {
            m.put("DataTypeTargetForNetworkList", tableTypes);
            chooser.setSelectedValue(ImportTableDataTask.NETWORK_SELECTION);
        } else {
            m.put("DataTypeTargetForNetworkCollection", tableTypes);
            chooser.setSelectedValue(ImportTableDataTask.NETWORK_COLLECTION);
        }
        m.put("TargetNetworkList", networksListTunable);
        m.put("KeyColumnForMapping", columnNamesList);
        m.put("TargetNetworkCollection", rootNetworkList);
    } else {
        chooser.setSelectedValue(ImportTableDataTask.UNASSIGNED_TABLE);
    }
    m.put("WhereImportTable", chooser);
    final TunableSetter tunableSetter = serviceRegistrar.getService(TunableSetter.class);
    return tunableSetter.createTaskIterator(createTaskIterator(globalTable), m);
}