Examples with TableType org.cytoscape.task.internal.table.MapTableToNetworkTablesTask.TableType used on opensource projects

Example 1 with TableType

use of org.cytoscape.task.internal.table.MapTableToNetworkTablesTask.TableType in project cytoscape-impl by cytoscape.

the class MapTableToNetworkTablesTaskFactoryImpl method createTaskIterator.

@Override
public TaskIterator createTaskIterator(CyTable globalTable, boolean selectedNetworksOnly, List<CyNetwork> networksList, Class<? extends CyIdentifiable> type) {
    TableType tableType = getTableType(type);
    if (tableType == null)
        throw new IllegalArgumentException("The specified type " + type + " is not acceptable.");
    ListSingleSelection<TableType> tableTypes = new ListSingleSelection<TableType>(tableType);
    tableTypes.setSelectedValue(tableType);
    List<String> networkNames = new ArrayList<String>();
    for (CyNetwork net : networksList) {
        networkNames.add(net.getRow(net).get(CyNetwork.NAME, String.class));
    }
    ListMultipleSelection<String> networksListTunable = new ListMultipleSelection<String>(networkNames);
    networksListTunable.setSelectedValues(networkNames);
    final Map<String, Object> m = new HashMap<String, Object>();
    m.put("dataTypeOptions", tableTypes);
    m.put("selectedNetworksOnly", selectedNetworksOnly);
    m.put("networkList", networksListTunable);
    return tunableSetter.createTaskIterator(createTaskIterator(globalTable), m);
}

Example 2 with TableType

use of org.cytoscape.task.internal.table.MapTableToNetworkTablesTask.TableType in project cytoscape-impl by cytoscape.

the class MergeTablesTaskFactoryImpl method createTaskIterator.

@Override
public TaskIterator createTaskIterator(final CyTable sourceTable, final CyTable targetTable, List<String> sourceColumnsList, String sourceKeyColumn, boolean mergeColumnVirtual, boolean mapToNetworks, boolean selectedNetworksOnly, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> type) {
    TableType tableType = getTableType(type);
    if (tableType == null)
        throw new IllegalArgumentException("The specified type " + type + " is not acceptable.");
    ListSingleSelection<TableType> tableTypes = new ListSingleSelection<TableType>(tableType);
    tableTypes.setSelectedValue(tableType);
    List<String> networkNames = new ArrayList<String>();
    if (networkList != null) {
        for (CyNetwork net : networkList) {
            networkNames.add(net.getRow(net).get(CyNetwork.NAME, String.class));
        }
    }
    ListMultipleSelection<String> networksListTunable = new ListMultipleSelection<String>(networkNames);
    networksListTunable.setSelectedValues(networkNames);
    List<String> rootNetworkNames = new ArrayList<String>();
    ListSingleSelection<String> rootNetworkList = new ListSingleSelection<String>();
    if (rootNetwork != null) {
        rootNetworkNames.add(rootNetwork.getRow(rootNetwork).get(CyNetwork.NAME, String.class));
        rootNetworkList = new ListSingleSelection<String>(rootNetworkNames);
        rootNetworkList.setSelectedValue(rootNetworkNames.get(0));
    }
    List<String> columnNames = new ArrayList<String>();
    ListSingleSelection<String> columnNamesList = new ListSingleSelection<String>();
    if (targetJoinColumn != null) {
        columnNames.add(targetJoinColumn.getName());
        columnNamesList = new ListSingleSelection<String>(columnNames);
        columnNamesList.setSelectedValue(columnNames.get(0));
    }
    final Map<String, Object> m = new HashMap<String, Object>();
    ListSingleSelection<String> chooser = new ListSingleSelection<String>(MergeTablesTask.NETWORK_COLLECTION, MergeTablesTask.NETWORK_SELECTION, MergeTablesTask.UNASSIGNED_TABLE);
    if (mapToNetworks) {
        if (selectedNetworksOnly)
            chooser.setSelectedValue(MergeTablesTask.NETWORK_SELECTION);
        else
            chooser.setSelectedValue(MergeTablesTask.NETWORK_COLLECTION);
    } else
        chooser.setSelectedValue(MergeTablesTask.UNASSIGNED_TABLE);
    ListSingleSelection<CyTable> sourceTableList = new ListSingleSelection<CyTable>(sourceTable);
    sourceTableList.setSelectedValue(sourceTable);
    ListSingleSelection<Object> targetTableList;
    if (targetTable != null) {
        targetTableList = new ListSingleSelection<Object>(targetTable);
        targetTableList.setSelectedValue(targetTable);
    } else {
        targetTableList = new ListSingleSelection<Object>(MergeTablesTask.NO_TABLES);
        targetTableList.setSelectedValue(MergeTablesTask.NO_TABLES);
    }
    ListMultipleSelection<String> sourceColNames = new ListMultipleSelection<String>(sourceColumnsList);
    sourceColNames.setSelectedValues(sourceColumnsList);
    ListSingleSelection<String> sourceColumn = new ListSingleSelection<String>(sourceKeyColumn);
    sourceColumn.setSelectedValue(sourceKeyColumn);
    m.put("MergeType", mergeColumnVirtual);
    m.put("SourceMergeKey", sourceColumn);
    m.put("TargetMergeKey", columnNamesList);
    m.put("SourceTable", sourceTableList);
    m.put("UnassignedTable", targetTableList);
    m.put("SourceMergeColumns", sourceColNames);
    m.put("WhereMergeTable", chooser);
    m.put("TargetNetworkList", networksListTunable);
    m.put("TargetKeyNetworkCollection", columnNamesList);
    m.put("TargetNetworkCollection", rootNetworkList);
    m.put("DataTypeTargetForNetworkCollection", tableTypes);
    m.put("DataTypeTargetForNetworkList", tableTypes);
    return tunableSetter.createTaskIterator(createTaskIterator(), m);
}

Example 3 with TableType

use of org.cytoscape.task.internal.table.MapTableToNetworkTablesTask.TableType in project cytoscape-impl by cytoscape.

the class JoinTablesTaskTaskFactoryImpl method createTaskIterator.

@Override
public TaskIterator createTaskIterator(CyTable globalTable, boolean selectedNetworksOnly, List<CyNetwork> networkList, CyRootNetwork rootNetwork, CyColumn targetJoinColumn, Class<? extends CyIdentifiable> type) {
    TableType tableType = getTableType(type);
    if (tableType == null)
        throw new IllegalArgumentException("The specified type " + type + " is not acceptable.");
    ListSingleSelection<TableType> tableTypes = new ListSingleSelection<TableType>(tableType);
    tableTypes.setSelectedValue(tableType);
    List<String> networkNames = new ArrayList<String>();
    for (CyNetwork net : networkList) {
        networkNames.add(net.getRow(net).get(CyNetwork.NAME, String.class));
    }
    ListMultipleSelection<String> networksListTunable = new ListMultipleSelection<String>(networkNames);
    networksListTunable.setSelectedValues(networkNames);
    List<String> rootNetworkNames = new ArrayList<String>();
    ListSingleSelection<String> rootNetworkList = new ListSingleSelection<String>();
    if (rootNetwork != null) {
        rootNetworkNames.add(rootNetwork.getRow(rootNetwork).get(CyNetwork.NAME, String.class));
        rootNetworkList = new ListSingleSelection<String>(rootNetworkNames);
        rootNetworkList.setSelectedValue(rootNetworkNames.get(0));
    }
    List<String> columnNames = new ArrayList<String>();
    ListSingleSelection<String> columnNamesList = new ListSingleSelection<String>();
    if (targetJoinColumn != null) {
        columnNames.add(targetJoinColumn.getName());
        columnNamesList = new ListSingleSelection<String>(columnNames);
        columnNamesList.setSelectedValue(columnNames.get(0));
    }
    final Map<String, Object> m = new HashMap<String, Object>();
    m.put("DataTypeOptions", tableTypes);
    m.put("SelectedNetworksOnly", selectedNetworksOnly);
    m.put("NetworkList", networksListTunable);
    m.put("ColumnList", columnNamesList);
    m.put("RootNetworkList", rootNetworkList);
    return tunableSetter.createTaskIterator(createTaskIterator(globalTable), m);
}