Examples with JSONResult org.cytoscape.work.json.JSONResult used on opensource projects

Example 11 with JSONResult

use of org.cytoscape.work.json.JSONResult in project cytoscape-impl by cytoscape.

the class GetEdgeAttributeTask method getResults.

public Object getResults(Class requestedType) {
    if (requestedType.equals(String.class)) {
        return DataUtils.convertMapToString(edgeDataMap);
    } else if (requestedType.equals(JSONResult.class)) {
        JSONResult res = () -> {
            if (edgeDataMap == null)
                return "[]";
            else {
                StringBuilder output = new StringBuilder("[");
                CyJSONUtil cyJSONUtil = serviceRegistrar.getService(CyJSONUtil.class);
                List<CyColumn> cyColumn = columnTunable.getColumnList(edgeTable);
                CyColumn[] cyColumnArray = cyColumn.size() > 0 ? cyColumn.toArray(new CyColumn[0]) : new CyColumn[] {};
                int count = edgeDataMap.size();
                for (CyIdentifiable edge : edgeDataMap.keySet()) {
                    CyRow row = edgeTable.getRow(edge.getSUID());
                    output.append(" " + cyJSONUtil.toJson(row, cyColumnArray));
                    if (count > 1) {
                        output.append(",\n");
                    }
                    count--;
                }
                output.append("\n]");
                return output.toString();
            }
        };
        return res;
    }
    return edgeDataMap;
}

Example 12 with JSONResult

use of org.cytoscape.work.json.JSONResult in project cytoscape-impl by cytoscape.

the class ListAvailableTask method getResults.

@SuppressWarnings({ "unchecked" })
@Override
public <R> R getResults(Class<? extends R> type) {
    if (type.equals(JSONResult.class)) {
        JSONResult res = () -> {
            StringBuilder stringBuilder = new StringBuilder("[");
            int count = webAppList.size();
            int index = 0;
            for (WebApp app : webAppList) {
                stringBuilder.append("{\"appName\": \"" + app.getName() + "\",");
                stringBuilder.append("\"description\": " + Utils.quote(app.getDescription()) + ",");
                if (app.getDetails() != null)
                    stringBuilder.append("\"details\": " + Utils.quote(app.getDetails()) + "}");
                else
                    stringBuilder.append("\"details\": \"\"}");
                index++;
                if (index < count)
                    stringBuilder.append(",");
            }
            stringBuilder.append("]");
            // System.out.println(stringBuilder.toString());
            return stringBuilder.toString();
        };
        return (R) res;
    } else if (type.equals(String.class)) {
        List<String> appList = new ArrayList<String>(webAppList.size());
        Map<String, WebApp> appMap = new HashMap<String, WebApp>();
        for (WebApp app : webAppList) {
            appList.add(app.getFullName().toLowerCase());
            appMap.put(app.getFullName().toLowerCase(), app);
        }
        Collections.sort(appList);
        String list = "";
        for (String app : appList) {
            WebApp thisApp = appMap.get(app);
            list += "name: " + thisApp.getFullName() + ", version: " + getVersion(thisApp) + "\n";
        }
        return (R) list;
    } else if (type.equals(List.class)) {
        List<String> list = new ArrayList<>();
        for (WebApp app : webAppList) {
            list.add(app.getFullName());
        }
        return (R) list;
    }
    return null;
}

Example 13 with JSONResult

use of org.cytoscape.work.json.JSONResult in project cytoscape-impl by cytoscape.

the class AddTask method getResults.

@Override
@SuppressWarnings({ "rawtypes", "unchecked" })
public Object getResults(Class type) {
    List<CyIdentifiable> identifiables = new ArrayList();
    if (nodeList != null)
        identifiables.addAll(nodeList);
    if (edgeList != null)
        identifiables.addAll(edgeList);
    if (type.equals(List.class)) {
        return identifiables;
    } else if (type.equals(String.class)) {
        if (identifiables.size() == 0)
            return "<none>";
        String ret = "";
        if (nodeList != null && nodeList.size() > 0) {
            ret += "Nodes added: \n";
            for (CyNode node : nodeList) {
                ret += "   " + network.getRow(node).get(CyNetwork.NAME, String.class) + "\n";
            }
        }
        if (edgeList != null && edgeList.size() > 0) {
            ret += "Edges added: \n";
            for (CyEdge edge : edgeList) {
                ret += "   " + network.getRow(edge).get(CyNetwork.NAME, String.class) + "\n";
            }
        }
        return ret;
    } else if (type.equals(JSONResult.class)) {
        JSONResult res = () -> {
            if (identifiables == null || identifiables.size() == 0)
                return "{}";
            else {
                CyJSONUtil cyJSONUtil = serviceRegistrar.getService(CyJSONUtil.class);
                String result = "{\"nodes\":";
                if (nodeList == null || nodeList.size() == 0)
                    result += "[]";
                else
                    result += cyJSONUtil.cyIdentifiablesToJson(nodeList);
                result += ", \"edges\":";
                if (edgeList == null || edgeList.size() == 0)
                    result += "[]";
                else
                    result += cyJSONUtil.cyIdentifiablesToJson(edgeList);
                result += "}";
                return result;
            }
        };
        return res;
    }
    return identifiables;
}

Example 14 with JSONResult

use of org.cytoscape.work.json.JSONResult in project cytoscape-impl by cytoscape.

the class RegisterNetworkTask method getResults.

@Override
public Object getResults(Class type) {
    if (type.equals(List.class)) {
        return views;
    } else if (type.equals(String.class)) {
        if (networks == null)
            return null;
        String res = "";
        if (views != null && views.size() > 0) {
            res += "Views:\n";
            for (CyNetworkView view : views) {
                res += "    " + DataUtils.getViewTitle(view) + " (SUID: " + view.getSUID() + ")" + "\n";
            }
        }
        res += "Networks:\n";
        for (CyNetwork network : networks) {
            res += "    " + DataUtils.getNetworkName(network) + " (SUID: " + network.getSUID() + ")" + "\n";
        }
        return res;
    } else if (type.equals(CyNetwork.class))
        return networks.get(0);
    else if (type.equals(CyNetworkView.class)) {
        if (views != null && views.size() > 0)
            return views.get(0);
        else
            return null;
    } else if (type.equals(JSONResult.class)) {
        JSONResult res = () -> {
            if (networks == null)
                return "{}";
            else if (singleton) {
                // Special case single network
                CyNetwork network = networks.get(0);
                CyNetworkView view = null;
                if (views.size() == 1)
                    view = views.get(0);
                String strRes = jsonNetView(network, view);
                return jsonNetView(network, view);
            } else {
                String strRes = "[";
                Set<CyNetwork> viewNets = new HashSet<>();
                boolean first = true;
                for (CyNetworkView view : views) {
                    CyNetwork net = view.getModel();
                    viewNets.add(net);
                    if (!first)
                        strRes += ",";
                    else
                        first = false;
                    strRes += jsonNetView(net, view);
                }
                for (CyNetwork net : networks) {
                    if (!viewNets.contains(net)) {
                        strRes += jsonNetView(net, null);
                    }
                }
                strRes += "]";
                return strRes;
            }
        };
        return res;
    }
    return null;
}

Example 15 with JSONResult

use of org.cytoscape.work.json.JSONResult in project cytoscape-impl by cytoscape.

the class DeselectTask method getResults.

public Object getResults(Class type) {
    List<CyIdentifiable> identifiables = new ArrayList<>();
    if (deselectedNodes != null && deselectedNodes.size() > 0) {
        identifiables.addAll(deselectedNodes);
    }
    if (deselectedEdges != null && deselectedEdges.size() > 0) {
        identifiables.addAll(deselectedEdges);
    }
    if (type.equals(List.class)) {
        return identifiables;
    } else if (type.equals(String.class)) {
        if (identifiables.size() == 0)
            return "<none>";
        String ret = "";
        if (deselectedNodes != null && deselectedNodes.size() > 0) {
            ret += "Nodes deselected: \n";
            for (CyNode node : deselectedNodes) {
                ret += "   " + network.getRow(node).get(CyNetwork.NAME, String.class) + "\n";
            }
        }
        if (deselectedEdges != null && deselectedEdges.size() > 0) {
            ret += "Edges deselected: \n";
            for (CyEdge edge : deselectedEdges) {
                ret += "   " + network.getRow(edge).get(CyNetwork.NAME, String.class) + "\n";
            }
        }
        return ret;
    } else if (type.equals(JSONResult.class)) {
        JSONResult res = () -> {
            if (identifiables == null || identifiables.size() == 0)
                return "{}";
            else {
                String result = "{\"nodes\":";
                if (deselectedNodes == null || deselectedNodes.size() == 0)
                    result += "[]";
                else
                    result += cyJSONUtil.cyIdentifiablesToJson(deselectedNodes);
                result += ", \"edges\":";
                if (deselectedEdges == null || deselectedEdges.size() == 0)
                    result += "[]";
                else
                    result += cyJSONUtil.cyIdentifiablesToJson(deselectedEdges);
                return result + "}";
            }
        };
        return res;
    }
    return identifiables;
}