Examples with UndoSupport org.cytoscape.work.undo.UndoSupport used on opensource projects

Example 16 with UndoSupport

use of org.cytoscape.work.undo.UndoSupport in project cytoscape-impl by cytoscape.

the class SelectAdjacentEdgesTaskTest method testRun.

@Test
public void testRun() throws Exception {
    UndoSupport undoSupport = mock(UndoSupport.class);
    when(r3.get("selected", Boolean.class)).thenReturn(true);
    when(r4.get("selected", Boolean.class)).thenReturn(false);
    Set<Long> selectedNodes = new HashSet<>();
    selectedNodes.add(r3.get(CyNetwork.SUID, Long.class));
    when(nodeTable.getMatchingKeys(CyNetwork.SELECTED, true, Long.class)).thenReturn(selectedNodes);
    List<CyEdge> el = new ArrayList<CyEdge>();
    el.add(e1);
    when(net.getAdjacentEdgeList(e3, CyEdge.Type.ANY)).thenReturn(el);
    // run the task
    Task t = new SelectAdjacentEdgesTask(undoSupport, net, networkViewManager, eventHelper);
    t.run(tm);
    // check that the expected rows were set
    verify(r1, times(1)).set("selected", true);
}

Example 17 with UndoSupport

use of org.cytoscape.work.undo.UndoSupport in project cytoscape-impl by cytoscape.

the class SelectFirstNeighborsTaskTest method testRun.

@Test
public void testRun() throws Exception {
    UndoSupport undoSupport = mock(UndoSupport.class);
    // more setup
    when(r3.get("selected", Boolean.class)).thenReturn(true);
    when(r4.get("selected", Boolean.class)).thenReturn(false);
    Set<Long> selectedNodes = new HashSet<>();
    selectedNodes.add(r3.get(CyNetwork.SUID, Long.class));
    when(nodeTable.getMatchingKeys(CyNetwork.SELECTED, true, Long.class)).thenReturn(selectedNodes);
    List<CyNode> nl = new ArrayList<CyNode>();
    nl.add(e4);
    when(net.getNeighborList(e3, CyEdge.Type.ANY)).thenReturn(nl);
    // run the task
    Task t = new SelectFirstNeighborsTask(undoSupport, net, networkViewManager, eventHelper, CyEdge.Type.ANY);
    t.run(tm);
    // check that the expected rows were set
    verify(r4, times(1)).set("selected", true);
}

Example 18 with UndoSupport

use of org.cytoscape.work.undo.UndoSupport in project cytoscape-impl by cytoscape.

the class HideFromSelectionTask method run.

@Override
public void run(final TaskMonitor tm) {
    tm.setProgress(0.0);
    final CyNetwork network = view.getModel();
    final List<CyIdentifiable> elements = new ArrayList<>();
    List<CyNode> nodes = null;
    List<CyEdge> edges = null;
    if (hideNodes) {
        nodes = CyTableUtil.getNodesInState(network, CyNetwork.SELECTED, selectionValue);
        elements.addAll(nodes);
    }
    tm.setProgress(0.1);
    if (hideEdges) {
        edges = CyTableUtil.getEdgesInState(network, CyNetwork.SELECTED, selectionValue);
        elements.addAll(edges);
    }
    final UndoSupport undoSupport = serviceRegistrar.getService(UndoSupport.class);
    final CyEventHelper eventHelper = serviceRegistrar.getService(CyEventHelper.class);
    final VisualMappingManager vmMgr = serviceRegistrar.getService(VisualMappingManager.class);
    undoSupport.postEdit(new HideEdit(description, view, elements, false, eventHelper, vmMgr));
    tm.setProgress(0.4);
    if (nodes != null)
        HideUtils.setVisibleNodes(nodes, false, view);
    tm.setProgress(0.6);
    if (edges != null)
        HideUtils.setVisibleEdges(edges, false, view);
    tm.setProgress(0.8);
    VisualStyle style = vmMgr.getVisualStyle(view);
    for (CyIdentifiable e : elements) {
        View<? extends CyIdentifiable> ev = null;
        if (e instanceof CyNode)
            ev = view.getNodeView((CyNode) e);
        else if (e instanceof CyEdge)
            ev = view.getEdgeView((CyEdge) e);
        if (ev != null)
            style.apply(network.getRow(e), ev);
    }
    view.updateView();
    tm.setProgress(1.0);
}

Example 19 with UndoSupport

use of org.cytoscape.work.undo.UndoSupport in project cytoscape-impl by cytoscape.

the class GenerateDiscreteValuesAction method actionPerformed.

// ==[ PUBLIC METHODS ]=============================================================================================
@Override
public void actionPerformed(final ActionEvent e) {
    final VisualPropertySheet selVpSheet = getVizMapperMainPanel().getSelectedVisualPropertySheet();
    if (selVpSheet == null)
        return;
    final Set<VisualPropertySheetItem<?>> vpSheetItems = selVpSheet.getSelectedItems();
    new Thread() {

        @Override
        public void run() {
            final Map<DiscreteMapping<?, ?>, Map<Object, Object>> previousMappingValues = new HashMap<DiscreteMapping<?, ?>, Map<Object, Object>>();
            final Map<DiscreteMapping<?, ?>, Map<Object, ?>> newMappingValues = new HashMap<DiscreteMapping<?, ?>, Map<Object, ?>>();
            for (final VisualPropertySheetItem<?> vpsItem : vpSheetItems) {
                final VisualPropertySheetItemModel<?> model = vpsItem.getModel();
                final VisualProperty<?> vp = (VisualProperty<?>) model.getVisualProperty();
                final Class<?> vpValueType = vp.getRange().getType();
                final Class<?> generatorType = generator.getDataType();
                final PropertySheetPanel propSheetPnl = vpsItem.getPropSheetPnl();
                final Item value = (Item) propSheetPnl.getTable().getValueAt(0, 0);
                if (value.isProperty()) {
                    final VizMapperProperty<?, ?, ?> prop = (VizMapperProperty<?, ?, ?>) value.getProperty();
                    if (vpValueType.isAssignableFrom(generatorType) || ((generator instanceof NumberSeriesMappingGenerator || generator instanceof RandomNumberMappingGenerator) && Number.class.isAssignableFrom(vpValueType)))
                        generateValues(vpsItem, prop.getValue().toString(), vp, previousMappingValues, newMappingValues);
                }
            }
            // Undo support
            if (!previousMappingValues.isEmpty()) {
                final UndoSupport undo = servicesUtil.get(UndoSupport.class);
                undo.postEdit(new GenerateValuesEdit(previousMappingValues, newMappingValues));
            }
        }
    }.start();
}

Example 20 with UndoSupport

use of org.cytoscape.work.undo.UndoSupport in project cytoscape-impl by cytoscape.

the class EditSelectedDiscreteValuesAction method actionPerformed.

// ==[ PUBLIC METHODS ]=============================================================================================
/**
 * Edit all selected cells at once. This is for Discrete Mapping only.
 */
@Override
@SuppressWarnings({ "rawtypes", "unchecked" })
public void actionPerformed(final ActionEvent e) {
    final VizMapperMainPanel vizMapperMainPanel = getVizMapperMainPanel();
    if (vizMapperMainPanel == null)
        return;
    final VisualPropertySheet vpSheet = vizMapperMainPanel.getSelectedVisualPropertySheet();
    if (vpSheet == null)
        return;
    for (final VisualPropertySheetItem<?> vpSheetItem : vpSheet.getSelectedItems()) {
        final VisualPropertySheetItemModel<?> model = vpSheetItem.getModel();
        final PropertySheetTable table = vpSheetItem.getPropSheetPnl().getTable();
        final int[] selected = table.getSelectedRows();
        if (selected == null || selected.length == 0 || !(model.getVisualMappingFunction() instanceof DiscreteMapping))
            continue;
        // Test with the first selected item
        final DiscreteMapping dm = (DiscreteMapping) model.getVisualMappingFunction();
        final VisualProperty vp = dm.getVisualProperty();
        Object newValue = null;
        try {
            // Get new value
            newValue = editorManager.showVisualPropertyValueEditor(vizMapperMainPanel, vp, vp.getDefault());
        } catch (Exception ex) {
            logger.error("Could not edit value.", ex);
        }
        if (newValue == null)
            continue;
        final Map<Object, Object> newValues = new HashMap<Object, Object>();
        final Map<Object, Object> previousValues = new HashMap<Object, Object>();
        for (int i = 0; i < selected.length; i++) {
            final Item item = ((Item) table.getValueAt(selected[i], 0));
            if (item != null && item.getProperty() instanceof VizMapperProperty) {
                final VizMapperProperty<?, ?, ?> prop = (VizMapperProperty<?, ?, ?>) item.getProperty();
                if (prop.getCellType() == CellType.DISCRETE) {
                    // Save the current value for undo
                    previousValues.put(prop.getKey(), prop.getValue());
                    // New value
                    newValues.put(prop.getKey(), newValue);
                }
            }
        }
        // Save the mapping->old_values for undo
        if (!previousValues.isEmpty())
            previousMappingValues.put(dm, previousValues);
        // Save the mapping->new_values for redo
        if (!newValues.isEmpty())
            newMappingValues.put(dm, newValues);
        // Update the visual mapping
        dm.putAll(newValues);
    }
    // Undo support
    if (!previousMappingValues.isEmpty()) {
        final UndoSupport undo = servicesUtil.get(UndoSupport.class);
        undo.postEdit(new EditSelectedDiscreteValuesEdit());
    }
}