Examples with DatasetImporterForRegistry org.eol.globi.data.DatasetImporterForRegistry used on opensource projects

Example 1 with DatasetImporterForRegistry

use of org.eol.globi.data.DatasetImporterForRegistry in project eol-globi-data by jhpoelen.

the class IndexerDataset method indexDatasets.

private static void indexDatasets(DatasetRegistry registry, NodeFactory nodeFactory) {
    try {
        final Collection<String> namespaces = registry.findNamespaces();
        String namespacelist = StringUtils.join(namespaces, CharsetConstant.SEPARATOR);
        LOG.info("found dataset namespaces: {" + namespacelist + "}");
        DatasetImporterForRegistry importer = new DatasetImporterForRegistry(new ParserFactoryLocal(), nodeFactory, registry);
        importer.setDatasetFilter(x -> !DatasetUtil.isDeprecated(x));
        importer.setDataset(new DatasetLocal(inStream -> inStream));
        importer.setLogger(new NullImportLogger());
        importer.importStudy();
    } catch (DatasetRegistryException | StudyImporterException e) {
        LOG.error("problem encountered while importing [" + DatasetImporterForRegistry.class.getName() + "]", e);
    }
}