Examples with TaxonUtil org.eol.globi.service.TaxonUtil used on opensource projects

Example 1 with TaxonUtil

use of org.eol.globi.service.TaxonUtil in project eol-globi-data by jhpoelen.

the class ResolvingTaxonIndexNoTx method indexAndConnect.

private TaxonNode indexAndConnect(List<Map<String, String>> taxonMatches, Taxon origTaxon, Taxon primaryTaxon, TaxonNode indexedTaxon) throws NodeFactoryException {
    Predicate<Taxon> selector = subj -> true;
    for (Map<String, String> taxonMatch : taxonMatches) {
        Taxon sameAsTaxon = TaxonUtil.mapToTaxon(taxonMatch);
        if (StringUtils.equals(sameAsTaxon.getExternalId(), origTaxon.getExternalId())) {
            indexedTaxon = createAndIndexTaxon(origTaxon, sameAsTaxon);
            selector = new ExcludeHomonyms(sameAsTaxon);
            break;
        }
    }
    final TaxonNode resolvedTaxon = indexedTaxon == null ? createAndIndexTaxon(origTaxon, primaryTaxon) : indexedTaxon;
    taxonMatches.stream().map(TaxonUtil::mapToTaxon).filter(selector).forEach(sameAsTaxon -> NodeUtil.connectTaxa(sameAsTaxon, resolvedTaxon, getGraphDbService(), RelTypes.SAME_AS));
    return resolvedTaxon;
}