Examples with InteractTypeMapperFactoryImpl org.eol.globi.util.InteractTypeMapperFactoryImpl used on opensource projects

Example 1 with InteractTypeMapperFactoryImpl

use of org.eol.globi.util.InteractTypeMapperFactoryImpl in project eol-globi-data by jhpoelen.

the class DatasetImporterForPensoftIT method singleTableHostInColumnHeader.

@Test
public void singleTableHostInColumnHeader() throws IOException, TermLookupServiceException, StudyImporterException {
    final JsonNode tableObj = getTableObj();
    assertNotNull(tableObj);
    tableObj.get("article_doi");
    final JsonNode annotations = tableObj.get("annotations");
    for (JsonNode annotation : annotations) {
        final InteractTypeMapper interactTypeMapper = new InteractTypeMapperFactoryImpl().create();
        if (annotation.has("id")) {
            final InteractType interactType = interactTypeMapper.getInteractType(annotation.get("id").asText());
        }
        if (annotation.has("context")) {
            String verbatimInteraction = annotation.get("context").asText();
        }
        annotation.get("row");
        annotation.get("column");
        annotation.get("possition");
    }
    tableObj.get("caption");
    List<Map<String, String>> rowValues = new ArrayList<>();
    InteractionListener listener = new InteractionListener() {

        @Override
        public void on(Map<String, String> interaction) throws StudyImporterException {
            rowValues.add(interaction);
        }
    };
    parseRowsAndEnrich(tableObj, listener, getResourceServiceTest());
}