Examples with DocumentImpl org.exist.dom.persistent.DocumentImpl used on opensource projects

Example 1 with DocumentImpl

use of org.exist.dom.persistent.DocumentImpl in project exist by eXist-db.

the class ResourceDeferredPermission method apply.

@Override
public void apply(final DBBroker broker, final Txn transaction) {
    try (final LockedDocument lockedDoc = broker.getXMLResource(getTarget(), Lock.LockMode.WRITE_LOCK)) {
        final DocumentImpl doc = lockedDoc.getDocument();
        final Permission permission = doc.getPermissions();
        PermissionFactory.chown(broker, permission, Optional.ofNullable(getOwner()), Optional.ofNullable(getGroup()));
        PermissionFactory.chmod(broker, permission, Optional.of(getMode()), Optional.ofNullable(permission instanceof ACLPermission ? getAces() : null));
        broker.storeXMLResource(transaction, doc);
    } catch (final PermissionDeniedException e) {
        final String msg = "ERROR: Failed to set permissions on Document '" + getTarget() + "'.";
        LOG.error(msg, e);
        getListener().warn(msg);
    }
}

Example 2 with DocumentImpl

use of org.exist.dom.persistent.DocumentImpl in project exist by eXist-db.

the class Configurator method parse.

public static Configuration parse(final Configurable instance, final DBBroker broker, final Collection collection, final XmldbURI fileURL) throws ConfigurationException {
    final FullXmldbURI key = getFullURI(broker.getBrokerPool(), collection.getURI().append(fileURL));
    Configuration conf = hotConfigs.get(key);
    if (conf != null) {
        return conf;
    }
    // XXX: locking required
    DocumentImpl document;
    try {
        document = collection.getDocument(broker, fileURL);
    } catch (final PermissionDeniedException pde) {
        throw new ConfigurationException(pde.getMessage(), pde);
    }
    if (document == null) {
        if (broker.isReadOnly()) {
            // create in memory document & configuration
            try (final UnsynchronizedByteArrayOutputStream os = new UnsynchronizedByteArrayOutputStream();
                final Writer writer = new OutputStreamWriter(os)) {
                final SAXSerializer serializer = new SAXSerializer(writer, null);
                serializer.startDocument();
                serialize(instance, serializer);
                serializer.endDocument();
                if (os.size() == 0) {
                    return null;
                }
                return parse(os.toInputStream());
            } catch (final IOException | SAXException e) {
                throw new ConfigurationException(e.getMessage(), e);
            }
        }
        try {
            document = save(instance, broker, collection, fileURL);
        } catch (final IOException e) {
            LOG.error(e.getMessage(), e);
            // TODO : throw exception ? -pb
            return null;
        }
    }
    if (document == null) {
        // possibly on corrupted database, find better solution (recovery flag?)
        return null;
    }
    final Element confElement = document.getDocumentElement();
    if (confElement == null) {
        // possibly on corrupted database, find better solution (recovery flag?)
        return null;
    }
    conf = new ConfigurationImpl(confElement);
    hotConfigs.put(key, conf);
    return conf;
}

Example 3 with DocumentImpl

use of org.exist.dom.persistent.DocumentImpl in project exist by eXist-db.

the class XQueryURLRewrite method getSource.

private SourceInfo getSource(final DBBroker broker, final String moduleLoadPath) throws ServletException {
    final SourceInfo sourceInfo;
    if (query.startsWith(XmldbURI.XMLDB_URI_PREFIX)) {
        // Is the module source stored in the database?
        try {
            final XmldbURI locationUri = XmldbURI.xmldbUriFor(query);
            try (final LockedDocument lockedSourceDoc = broker.getXMLResource(locationUri.toCollectionPathURI(), LockMode.READ_LOCK)) {
                if (lockedSourceDoc == null) {
                    throw new ServletException("XQuery resource: " + query + " not found in database");
                }
                final DocumentImpl sourceDoc = lockedSourceDoc.getDocument();
                if (sourceDoc.getResourceType() != DocumentImpl.BINARY_FILE || !"application/xquery".equals(sourceDoc.getMimeType())) {
                    throw new ServletException("XQuery resource: " + query + " is not an XQuery or " + "declares a wrong mime-type");
                }
                sourceInfo = new SourceInfo(new DBSource(broker, (BinaryDocument) sourceDoc, true), locationUri.toString());
            } catch (final PermissionDeniedException e) {
                throw new ServletException("permission denied to read module source from " + query);
            }
        } catch (final URISyntaxException e) {
            throw new ServletException(e.getMessage(), e);
        }
    } else {
        try {
            sourceInfo = new SourceInfo(SourceFactory.getSource(broker, moduleLoadPath, query, true), moduleLoadPath);
        } catch (final IOException e) {
            throw new ServletException("IO error while reading XQuery source: " + query);
        } catch (final PermissionDeniedException e) {
            throw new ServletException("Permission denied while reading XQuery source: " + query);
        }
    }
    return sourceInfo;
}

Example 4 with DocumentImpl

use of org.exist.dom.persistent.DocumentImpl in project exist by eXist-db.

the class DOMFile method findValue.

/**
 * Retrieve node at virtual address.
 *
 * @param broker the database broker
 * @param node The virtual address
 * @return The reference of the node
 * @throws IOException if an I/O error occurs
 * @throws BTreeException if an error occurs reading the tree
 */
protected long findValue(final DBBroker broker, final NodeProxy node) throws IOException, BTreeException {
    if (LOG.isDebugEnabled() && !lockManager.isBtreeLocked(getLockName())) {
        LOG.debug("The file doesn't own a lock");
    }
    final DocumentImpl doc = node.getOwnerDocument();
    final NodeRef nodeRef = new NativeBroker.NodeRef(doc.getDocId(), node.getNodeId());
    // first try to find the node in the index
    final long pointer = findValue(nodeRef);
    if (pointer == KEY_NOT_FOUND) {
        // node not found in index: try to find the nearest available
        // ancestor and traverse it
        NodeId nodeID = node.getNodeId();
        long parentPointer = KEY_NOT_FOUND;
        do {
            nodeID = nodeID.getParentId();
            if (nodeID == null) {
                SanityCheck.TRACE("Node " + node.getOwnerDocument().getDocId() + ":<null nodeID> not found.");
                throw new BTreeException("Node not found.");
            }
            if (nodeID == NodeId.DOCUMENT_NODE) {
                SanityCheck.TRACE("Node " + node.getOwnerDocument().getDocId() + ":" + nodeID + " not found.");
                return KEY_NOT_FOUND;
            }
            final NativeBroker.NodeRef parentRef = new NativeBroker.NodeRef(doc.getDocId(), nodeID);
            try {
                parentPointer = findValue(parentRef);
            } catch (final BTreeException bte) {
                LOG.error("report me", bte);
            }
        } while (parentPointer == KEY_NOT_FOUND);
        try {
            final int thisLevel = nodeID.getTreeLevel();
            // lazily initialized below
            Integer childLevel = null;
            final NodeProxy parent = new NodeProxy(doc, nodeID, parentPointer);
            final EmbeddedXMLStreamReader reader = (EmbeddedXMLStreamReader) broker.getXMLStreamReader(parent, true);
            while (reader.hasNext()) {
                final int status = reader.next();
                if (status != XMLStreamReader.END_ELEMENT) {
                    if (childLevel == null) {
                        childLevel = reader.getNode().getNodeType() == Node.ELEMENT_NODE ? thisLevel + 1 : thisLevel;
                    }
                    final NodeId otherId = (NodeId) reader.getProperty(ExtendedXMLStreamReader.PROPERTY_NODE_ID);
                    if (otherId.equals(node.getNodeId())) {
                        return reader.getCurrentPosition();
                    }
                }
                if (status == XMLStreamConstants.END_ELEMENT) {
                    final NodeId otherId = (NodeId) reader.getProperty(ExtendedXMLStreamReader.PROPERTY_NODE_ID);
                    final int otherLevel = otherId.getTreeLevel();
                    if (childLevel != null && childLevel != otherLevel && otherLevel == thisLevel) {
                        // exit-while
                        break;
                    }
                }
            }
            if (LOG.isDebugEnabled()) {
                LOG.debug("Node {} could not be found. Giving up. This is usually not an error.", node.getNodeId());
            }
            return KEY_NOT_FOUND;
        } catch (final XMLStreamException e) {
            SanityCheck.TRACE("Node " + node.getOwnerDocument().getDocId() + ":" + node.getNodeId() + " not found.");
            throw new BTreeException("Node " + node.getNodeId() + " not found.");
        }
    } else {
        return pointer;
    }
}

Example 5 with DocumentImpl

use of org.exist.dom.persistent.DocumentImpl in project exist by eXist-db.

the class RootNode method eval.

public Sequence eval(Sequence contextSequence, Item contextItem) throws XPathException {
    if (context.getProfiler().isEnabled()) {
        context.getProfiler().start(this);
        context.getProfiler().message(this, Profiler.DEPENDENCIES, "DEPENDENCIES", Dependency.getDependenciesName(this.getDependencies()));
        if (contextSequence != null) {
            context.getProfiler().message(this, Profiler.START_SEQUENCES, "CONTEXT SEQUENCE", contextSequence);
        }
        if (contextItem != null) {
            context.getProfiler().message(this, Profiler.START_SEQUENCES, "CONTEXT ITEM", contextItem.toSequence());
        }
    }
    // first, if we have been explicitly given a context item or context sequence, we can just use that
    if (contextItem != null) {
        return new ValueSequence(contextItem);
    } else if (contextSequence != null && contextSequence != Sequence.EMPTY_SEQUENCE) {
        return contextSequence;
    }
    // second, check if a context item is declared
    final ContextItemDeclaration decl = context.getContextItemDeclartion();
    if (decl != null) {
        final Sequence seq = decl.eval(null, null);
        if (!seq.isEmpty()) {
            final Item item = seq.itemAt(0);
            // context item must be a node
            if (!Type.subTypeOf(item.getType(), Type.NODE)) {
                throw new XPathException(this, ErrorCodes.XPTY0020, "Context item is not a node");
            }
            final NodeValue node = (NodeValue) item;
            // return fn:root(self::node()) treat as document-node()
            if (node.getImplementationType() == NodeValue.PERSISTENT_NODE) {
                return new NodeProxy(((NodeProxy) item).getOwnerDocument());
            } else {
                if (node.getType() == Type.DOCUMENT) {
                    return node;
                }
                return (org.exist.dom.memtree.DocumentImpl) node.getOwnerDocument();
            }
        }
        return Sequence.EMPTY_SEQUENCE;
    }
    // get statically known documents from the context
    DocumentSet ds = context.getStaticallyKnownDocuments();
    if (ds == null || ds.getDocumentCount() == 0) {
        return Sequence.EMPTY_SEQUENCE;
    }
    // fix for util:eval-with-context
    if (contextSequence != null) {
        if (!contextSequence.isEmpty()) {
            final Item item = contextSequence.itemAt(0);
            // context item must be a node
            if (!Type.subTypeOf(item.getType(), Type.NODE)) {
                throw new XPathException(this, ErrorCodes.XPTY0020, "Context item is not a node");
            }
            final NodeValue node = (NodeValue) item;
            // return fn:root(self::node()) treat as document-node()
            if (node.getImplementationType() == NodeValue.PERSISTENT_NODE) {
                return new NodeProxy(((NodeProxy) item).getOwnerDocument());
            } else {
                if (node.getType() == Type.DOCUMENT) {
                    return node;
                }
                return (org.exist.dom.memtree.DocumentImpl) node.getOwnerDocument();
            }
        } else {
            return Sequence.EMPTY_SEQUENCE;
        }
    }
    // // if the expression occurs in a nested context, we might have cached the
    // // document set
    // // TODO: disabled cache for now as it may cause concurrency issues
    // // better use compile-time inspection and maybe a pragma to mark those
    // // sections in the query that can be safely cached
    // if (cachedDocs != null && cachedDocs.equalDocs(ds)) return cached;
    // check if the loaded documents should remain locked
    NewArrayNodeSet result = new NewArrayNodeSet();
    // NOTE(AR) locking the documents here does not actually do anything useful, eXist-db will still exhibit weak isolation with concurrent updates
    // ManagedLocks<ManagedDocumentLock> docLocks = null;
    // try {
    // // wait for pending updates
    // if (!context.inProtectedMode()) {
    // docLocks = ds.lock(context.getBroker(), false);
    // }
    DocumentImpl doc;
    for (final Iterator<DocumentImpl> i = ds.getDocumentIterator(); i.hasNext(); ) {
        doc = i.next();
        if (context.inProtectedMode() && !context.getProtectedDocs().containsKey(doc.getDocId())) {
            continue;
        }
        if (doc.getResourceType() == DocumentImpl.XML_FILE) {
            // skip binary resources
            result.add(new NodeProxy(doc));
        }
    }
    cached = result;
    cachedDocs = ds;
    // result.updateNoSort();
    if (context.getProfiler().isEnabled()) {
        context.getProfiler().end(this, "", result);
    }
    registerUpdateListener();
    return result;
}