Examples with Treatment org.eyeseetea.malariacare.data.database.model.Treatment used on opensource projects

Example 1 with Treatment

use of org.eyeseetea.malariacare.data.database.model.Treatment in project pictureapp by EyeSeeTea.

the class RelationsIdCsvDB method getTreatmentIdRelationCsvDB.

static HashMap<Long, Treatment> getTreatmentIdRelationCsvDB(Context context) throws IOException {
    HashMap<Long, Treatment> treatmentFK = new HashMap<>();
    List<Treatment> treatments = Treatment.getAllTreatments();
    List<Long> csvIds = new ArrayList<>();
    CSVReader reader = new CSVReader(new InputStreamReader(context.openFileInput(PopulateDB.TREATMENT_CSV)), PopulateDB.SEPARATOR, PopulateDB.QUOTECHAR);
    String[] idToAdd;
    while ((idToAdd = reader.readNext()) != null) {
        csvIds.add(Long.parseLong(idToAdd[0]));
    }
    for (int i = 0; i < treatments.size() && i < csvIds.size(); i++) {
        treatmentFK.put(csvIds.get(i), treatments.get(i));
    }
    return treatmentFK;
}

Example 2 with Treatment

use of org.eyeseetea.malariacare.data.database.model.Treatment in project pictureapp by EyeSeeTea.

the class TreatmentTable method deleteOldTreatmentTable.

private void deleteOldTreatmentTable() throws IOException {
    List<TreatmentMatch> treatmentMatches = TreatmentMatch.getAllTreatmentMatches();
    for (TreatmentMatch treatmentMatch : treatmentMatches) {
        deleteRelatedTablesLines(treatmentMatch);
        treatmentMatch.delete();
    }
    List<Treatment> treatments = Treatment.getAllTreatments();
    for (Treatment treatment : treatments) {
        treatment.delete();
    }
    List<DrugCombination> drugCombinations = DrugCombination.getAllDrugCombination();
    for (DrugCombination drugCombination : drugCombinations) {
        drugCombination.delete();
    }
    List<StringKey> stringKeys = StringKey.getAllStringKeys();
    for (StringKey stringKey : stringKeys) {
        stringKey.delete();
    }
    List<Translation> translations = Translation.getAllTranslations();
    for (Translation translation : translations) {
        translation.delete();
    }
}

Example 3 with Treatment

use of org.eyeseetea.malariacare.data.database.model.Treatment in project pictureapp by EyeSeeTea.

the class PopulateDB method populateDB.

public static void populateDB(Context context) throws IOException {
    // Reset inner references
    cleanInnerLists();
    for (String table : tables2populate) {
        Log.i(TAG, "Loading csv: " + table);
        CSVReader reader = null;
        try {
            reader = new CSVReader(new InputStreamReader(new PopulateDBStrategy().openFile(context, table)), SEPARATOR, QUOTECHAR);
        } catch (FileNotFoundException e) {
            tableNotExistLog(e, table);
        } catch (IOException e) {
            tableNotExistLog(e, table);
        }
        if (reader == null) {
            continue;
        }
        String[] line;
        while ((line = reader.readNext()) != null && !line[0].isEmpty()) {
            switch(table) {
                case PROGRAMS_CSV:
                    Program program = new Program();
                    program.setUid(line[1]);
                    program.setName(line[2]);
                    program.setStageUid(line[3]);
                    program.save();
                    programList.put(Integer.valueOf(line[0]), program);
                    break;
                case TABS_CSV:
                    Tab tab = new Tab();
                    tab.setName(line[1]);
                    tab.setOrder_pos(Integer.valueOf(line[2]));
                    tab.setProgram(programList.get(Integer.valueOf(line[3])));
                    tab.setType(Integer.valueOf(line[4]));
                    tab.save();
                    tabList.put(Integer.valueOf(line[0]), tab);
                    break;
                case HEADERS_CSV:
                    Header header = new Header();
                    header.setShort_name(line[1]);
                    header.setName(line[2]);
                    header.setOrder_pos(Integer.valueOf(line[3]));
                    header.setTab(tabList.get(Integer.valueOf(line[4])));
                    header.save();
                    headerList.put(Integer.valueOf(line[0]), header);
                    break;
                case ANSWERS_CSV:
                    Answer answer = new Answer();
                    answer.setName(line[1]);
                    answer.save();
                    answerList.put(Integer.valueOf(line[0]), answer);
                    break;
                case OPTION_ATTRIBUTES_CSV:
                    OptionAttribute optionAttribute = new OptionAttribute();
                    optionAttribute.setBackground_colour(line[1]);
                    optionAttribute.setPath(line[2]);
                    if (line.length > 3 && !line[3].equals("")) {
                        optionAttribute.setHorizontal_alignment(Integer.valueOf(line[3]));
                    } else {
                        optionAttribute.setHorizontal_alignment(OptionAttribute.DEFAULT_HORIZONTAL_ALIGNMENT);
                    }
                    if (line.length > 4 && !line[4].equals("")) {
                        optionAttribute.setVertical_alignment(Integer.valueOf(line[4]));
                    } else {
                        optionAttribute.setHorizontal_alignment(OptionAttribute.DEFAULT_VERTICAL_ALIGNMENT);
                    }
                    if (line.length > 5 && !line[5].equals("")) {
                        optionAttribute.setText_size(Integer.valueOf(line[5]));
                    } else {
                        optionAttribute.setText_size(Integer.parseInt(PreferencesState.getInstance().getContext().getResources().getString(R.string.default_option_text_size)));
                    }
                    if (line.length > 6 && !line[6].equals("")) {
                        optionAttribute.setDefaultOption(Integer.valueOf(line[6]));
                    } else {
                        optionAttribute.setDefaultOption(0);
                    }
                    optionAttribute.save();
                    optionAttributeList.put(Integer.valueOf(line[0]), optionAttribute);
                    break;
                case OPTIONS_CSV:
                    Option option = new Option();
                    option.setName(line[1]);
                    option.setCode(line[2]);
                    option.setFactor(Float.valueOf(line[3]));
                    option.setAnswer(answerList.get(Integer.valueOf(line[4])));
                    if (line[5] != null && !line[5].isEmpty()) {
                        option.setOptionAttribute(optionAttributeList.get(Integer.valueOf(line[5])));
                    }
                    option.save();
                    optionList.put(Integer.valueOf(line[0]), option);
                    break;
                case QUESTIONS_CSV:
                    Question question = new Question();
                    question.setCode(line[1]);
                    question.setDe_name(line[2]);
                    question.setHelp_text(line[3]);
                    question.setForm_name(line[4]);
                    question.setUid(line[5]);
                    question.setOrder_pos(Integer.valueOf(line[6]));
                    question.setNumerator_w(Float.valueOf(line[7]));
                    question.setDenominator_w(Float.valueOf(line[8]));
                    question.setHeader(headerList.get(Integer.valueOf(line[9])));
                    if (!line[10].equals("")) {
                        question.setAnswer(answerList.get(Integer.valueOf(line[10])));
                    }
                    if (!line[11].equals("")) {
                        question.setQuestion(questionList.get(Integer.valueOf(line[11])));
                    }
                    question.setOutput(Integer.valueOf(line[12]));
                    question.setTotalQuestions(Integer.valueOf(line[13]));
                    question.setVisible(Integer.valueOf(line[14]));
                    if (line.length > 15 && !line[15].equals("")) {
                        question.setPath((line[15]));
                    }
                    if (line.length > 16 && !line[16].equals("")) {
                        question.setCompulsory(Integer.valueOf(line[16]));
                    } else {
                        question.setCompulsory(Question.QUESTION_NOT_COMPULSORY);
                    }
                    question.save();
                    questionList.put(Integer.valueOf(line[0]), question);
                    break;
                case QUESTION_RELATIONS_CSV:
                    QuestionRelation questionRelation = new QuestionRelation();
                    questionRelation.setOperation(Integer.valueOf(line[1]));
                    questionRelation.setQuestion(questionList.get(Integer.valueOf(line[2])));
                    questionRelation.save();
                    questionRelationList.put(Integer.valueOf(line[0]), questionRelation);
                    break;
                case MATCHES:
                    Match match = new Match();
                    match.setQuestionRelation(questionRelationList.get(Integer.valueOf(line[1])));
                    match.save();
                    matchList.put(Long.valueOf(line[0]), match);
                    break;
                case QUESTION_OPTIONS_CSV:
                    QuestionOption questionOption = new QuestionOption();
                    questionOption.setQuestion(questionList.get(Integer.valueOf(line[1])));
                    if (!line[2].equals("")) {
                        questionOption.setOption(optionList.get(Integer.valueOf(line[2])));
                    }
                    if (!line[3].equals("")) {
                        questionOption.setMatch(matchList.get(Long.valueOf(line[3])));
                    }
                    questionOption.save();
                    break;
                case QUESTION_THRESHOLDS_CSV:
                    QuestionThreshold questionThreshold = new QuestionThreshold();
                    questionThreshold.setMatch(matchList.get(Long.valueOf(line[1])));
                    questionThreshold.setQuestion(questionList.get(Integer.valueOf(line[2])));
                    if (!line[3].equals("")) {
                        questionThreshold.setMinValue(Integer.valueOf(line[3]));
                    }
                    if (!line[4].equals("")) {
                        questionThreshold.setMaxValue(Integer.valueOf(line[4]));
                    }
                    questionThreshold.save();
                    break;
                case DRUGS_CSV:
                    Drug drug = PopulateRow.populateDrugs(line, null);
                    drug.insert();
                    drugList.put(Long.parseLong(line[0]), drug);
                    break;
                case PARTNER_CSV:
                    Partner partner = PopulateRow.populateOrganisations(line, null);
                    partner.insert();
                    organisationList.put(Long.parseLong(line[0]), partner);
                    break;
                case TREATMENT_CSV:
                    Treatment treatment = PopulateRow.populateTreatments(line, organisationList, stringKeyList, null);
                    treatment.insert();
                    treatmentList.put(Long.parseLong(line[0]), treatment);
                    break;
                case DRUG_COMBINATIONS_CSV:
                    PopulateRow.populateDrugCombinations(line, drugList, treatmentList, null).insert();
                    break;
                case TREATMENT_MATCHES_CSV:
                    PopulateRow.populateTreatmentMatches(line, treatmentList, matchList, null).insert();
                    break;
                case STRING_KEY_CSV:
                    StringKey stringKey = PopulateRow.populateStringKey(line, null);
                    stringKey.insert();
                    stringKeyList.put(Long.valueOf(line[0]), stringKey);
                    break;
                case TRANSLATION_CSV:
                    PopulateRow.populateTranslation(line, stringKeyList, null).insert();
                    break;
            }
        }
        reader.close();
    }
    // Free references since the maps are static
    cleanInnerLists();
}

Example 4 with Treatment

use of org.eyeseetea.malariacare.data.database.model.Treatment in project pictureapp by EyeSeeTea.

the class PopulateRow method populateTreatments.

/**
 * Method to populate each row of Treatment.csv, execute after populateOrganisations.
 *
 * @param line The row of the csv to populate.
 * @param stringKeyList
 */
static Treatment populateTreatments(String[] line, HashMap<Long, Partner> organisationFK, HashMap<Long, StringKey> stringKeyList, @Nullable Treatment treatment) {
    if (treatment == null) {
        treatment = new Treatment();
    }
    treatment.setOrganisation(organisationFK.get(Long.parseLong(line[1])));
    treatment.setDiagnosis(stringKeyList.get(Long.valueOf(line[2])).getId_string_key());
    treatment.setMessage(stringKeyList.get(Long.valueOf(line[3])).getId_string_key());
    treatment.setType(Integer.parseInt(line[4]));
    return treatment;
}

Example 5 with Treatment

use of org.eyeseetea.malariacare.data.database.model.Treatment in project pictureapp by EyeSeeTea.

the class UpdateDB method updateTreatments.

/**
 * Method to update treatments from csvs.
 *
 * @param context Needed to open the csvs.
 * @throws IOException If there is a problem opening the csv.
 */
public static void updateTreatments(Context context, boolean updateCSV) throws IOException {
    if (updateCSV) {
        FileCsvs fileCsvs = new FileCsvs();
        fileCsvs.saveCsvFromAssetsToFile(PopulateDB.TREATMENT_CSV);
    }
    List<Treatment> treatments = Treatment.getAllTreatments();
    HashMap<Long, Partner> organisationIds = RelationsIdCsvDB.getOrganisationIdRelationCsvDB(context);
    HashMap<Long, StringKey> stringKeyIds = RelationsIdCsvDB.getStringKeyIdRelationCsvDB(context);
    CSVReader reader = new CSVReader(new InputStreamReader(context.openFileInput(PopulateDB.TREATMENT_CSV)), SEPARATOR, QUOTECHAR);
    String[] line;
    int i = 0;
    while ((line = reader.readNext()) != null) {
        if (i < treatments.size()) {
            PopulateRow.populateTreatments(line, organisationIds, stringKeyIds, treatments.get(i)).save();
        } else {
            PopulateRow.populateTreatments(line, organisationIds, stringKeyIds, null).insert();
        }
        i++;
    }
}