Examples with Identifier org.flyte.api.v1.Identifier used on opensource projects

Example 1 with Identifier

use of org.flyte.api.v1.Identifier in project ORCID-Source by ORCID.

the class WorksTest method testWorksWithPartOfRelationshipDontGetGrouped.

@Test
public void testWorksWithPartOfRelationshipDontGetGrouped() throws JSONException, InterruptedException, URISyntaxException {
    long time = System.currentTimeMillis();
    String accessTokenForClient1 = getAccessToken();
    String accessTokenForClient2 = getAccessToken(getUser1OrcidId(), getUser1Password(), getScopes(ScopePathType.ACTIVITIES_UPDATE, ScopePathType.ACTIVITIES_READ_LIMITED), getClient2ClientId(), getClient2ClientSecret(), getClient2RedirectUri());
    Work work1 = (Work) unmarshallFromPath("/record_2.0_rc1/samples/work-2.0_rc1.xml", Work.class);
    work1.setPutCode(null);
    work1.setVisibility(Visibility.PUBLIC);
    work1.getExternalIdentifiers().getExternalIdentifier().clear();
    org.orcid.jaxb.model.record_rc1.WorkTitle title1 = new org.orcid.jaxb.model.record_rc1.WorkTitle();
    title1.setTitle(new Title("Work # 1" + time));
    work1.setWorkTitle(title1);
    WorkExternalIdentifier wExtId1 = new WorkExternalIdentifier();
    wExtId1.setWorkExternalIdentifierId(new WorkExternalIdentifierId("Work Id " + time));
    wExtId1.setWorkExternalIdentifierType(WorkExternalIdentifierType.AGR);
    wExtId1.setRelationship(Relationship.SELF);
    wExtId1.setUrl(new Url("http://orcid.org/work#1"));
    work1.getExternalIdentifiers().getExternalIdentifier().clear();
    work1.getExternalIdentifiers().getExternalIdentifier().add(wExtId1);
    Work work2 = (Work) unmarshallFromPath("/record_2.0_rc1/samples/work-2.0_rc1.xml", Work.class);
    work2.setPutCode(null);
    work2.setVisibility(Visibility.PUBLIC);
    org.orcid.jaxb.model.record_rc1.WorkTitle title2 = new org.orcid.jaxb.model.record_rc1.WorkTitle();
    title2.setTitle(new Title("Work # 2" + time));
    work2.setWorkTitle(title2);
    work2.getExternalIdentifiers().getExternalIdentifier().clear();
    WorkExternalIdentifier wExtId2 = new WorkExternalIdentifier();
    wExtId2.setWorkExternalIdentifierId(new WorkExternalIdentifierId("Work Id " + time));
    wExtId2.setWorkExternalIdentifierType(WorkExternalIdentifierType.AGR);
    wExtId2.setRelationship(Relationship.PART_OF);
    wExtId2.setUrl(new Url("http://orcid.org/work#2"));
    work2.getExternalIdentifiers().getExternalIdentifier().clear();
    work2.getExternalIdentifiers().getExternalIdentifier().add(wExtId2);
    Work work3 = (Work) unmarshallFromPath("/record_2.0_rc1/samples/work-2.0_rc1.xml", Work.class);
    work3.setPutCode(null);
    work3.setVisibility(Visibility.PUBLIC);
    org.orcid.jaxb.model.record_rc1.WorkTitle title3 = new org.orcid.jaxb.model.record_rc1.WorkTitle();
    title3.setTitle(new Title("Work # 3" + time));
    work3.setWorkTitle(title3);
    work3.getExternalIdentifiers().getExternalIdentifier().clear();
    WorkExternalIdentifier wExtId3 = new WorkExternalIdentifier();
    wExtId3.setWorkExternalIdentifierId(new WorkExternalIdentifierId("Work Id " + time));
    wExtId3.setWorkExternalIdentifierType(WorkExternalIdentifierType.AGR);
    wExtId3.setRelationship(Relationship.SELF);
    wExtId3.setUrl(new Url("http://orcid.org/work#3"));
    work3.getExternalIdentifiers().getExternalIdentifier().clear();
    work3.getExternalIdentifiers().getExternalIdentifier().add(wExtId3);
    // Add the three works
    ClientResponse postResponse = memberV2ApiClient.createWorkXml(this.getUser1OrcidId(), work1, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    Long putCode1 = getPutCodeFromResponse(postResponse);
    postResponse = memberV2ApiClient.createWorkXml(this.getUser1OrcidId(), work2, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    Long putCode2 = getPutCodeFromResponse(postResponse);
    postResponse = memberV2ApiClient.createWorkXml(this.getUser1OrcidId(), work3, accessTokenForClient2);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    Long putCode3 = getPutCodeFromResponse(postResponse);
    ClientResponse activitiesResponse = memberV2ApiClient.viewActivities(this.getUser1OrcidId(), accessTokenForClient1);
    assertEquals(Response.Status.OK.getStatusCode(), activitiesResponse.getStatus());
    ActivitiesSummary activities = activitiesResponse.getEntity(ActivitiesSummary.class);
    assertNotNull(activities);
    assertFalse(activities.getWorks().getWorkGroup().isEmpty());
    WorkGroup work1Group = null;
    WorkGroup work2Group = null;
    WorkGroup work3Group = null;
    boolean work1found = false;
    boolean work2found = false;
    boolean work3found = false;
    for (WorkGroup group : activities.getWorks().getWorkGroup()) {
        if (group.getIdentifiers().getIdentifier() == null || group.getIdentifiers().getIdentifier().isEmpty()) {
            for (WorkSummary summary : group.getWorkSummary()) {
                String title = summary.getTitle().getTitle().getContent();
                if (("Work # 2" + time).equals(title)) {
                    work2found = true;
                    work2Group = group;
                }
            }
        } else {
            for (Identifier id : group.getIdentifiers().getIdentifier()) {
                // If it is the ID is the one we are looking for
                if (id.getExternalIdentifierId().equals("Work Id " + time)) {
                    for (WorkSummary summary : group.getWorkSummary()) {
                        String title = summary.getTitle().getTitle().getContent();
                        if (("Work # 1" + time).equals(title)) {
                            work1found = true;
                            work1Group = group;
                        } else if (("Work # 3" + time).equals(title)) {
                            work3found = true;
                            work3Group = group;
                        }
                    }
                }
            }
        }
    }
    assertTrue(work1found);
    assertTrue(work2found);
    assertTrue(work3found);
    // Check that work # 1 and Work # 3 are in the same work
    assertEquals(work1Group, work3Group);
    // Check that work # 2 is not in the same group than group # 1
    assertThat(work2Group, not(work1Group));
    // Remove all created works
    ClientResponse deleteResponse = memberV2ApiClient.deleteWorkXml(this.getUser1OrcidId(), putCode1, accessTokenForClient1);
    assertNotNull(deleteResponse);
    assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
    deleteResponse = memberV2ApiClient.deleteWorkXml(this.getUser1OrcidId(), putCode2, accessTokenForClient1);
    assertNotNull(deleteResponse);
    assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
    deleteResponse = memberV2ApiClient.deleteWorkXml(this.getUser1OrcidId(), putCode3, accessTokenForClient2);
    assertNotNull(deleteResponse);
    assertEquals(Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
}

Example 2 with Identifier

use of org.flyte.api.v1.Identifier in project ORCID-Source by ORCID.

the class MemberV2Test method testWorksWithPartOfRelationshipDontGetGrouped.

@Test
public void testWorksWithPartOfRelationshipDontGetGrouped() throws JSONException, InterruptedException, URISyntaxException {
    long time = System.currentTimeMillis();
    String accessTokenForClient1 = getAccessToken();
    String accessTokenForClient2 = getAccessToken(getUser1OrcidId(), getUser1Password(), getScopes(), getClient2ClientId(), getClient2ClientSecret(), getClient2RedirectUri());
    Work work1 = (Work) unmarshallFromPath("/record_2.0_rc1/samples/work-2.0_rc1.xml", Work.class);
    work1.setPutCode(null);
    work1.setVisibility(Visibility.PUBLIC);
    work1.getExternalIdentifiers().getExternalIdentifier().clear();
    org.orcid.jaxb.model.record_rc1.WorkTitle title1 = new org.orcid.jaxb.model.record_rc1.WorkTitle();
    title1.setTitle(new Title("Work # 1" + time));
    work1.setWorkTitle(title1);
    WorkExternalIdentifier wExtId1 = new WorkExternalIdentifier();
    wExtId1.setWorkExternalIdentifierId(new WorkExternalIdentifierId("Work Id " + time));
    wExtId1.setWorkExternalIdentifierType(WorkExternalIdentifierType.AGR);
    wExtId1.setRelationship(Relationship.SELF);
    wExtId1.setUrl(new Url("http://orcid.org/work#1"));
    work1.getExternalIdentifiers().getWorkExternalIdentifier().clear();
    work1.getExternalIdentifiers().getWorkExternalIdentifier().add(wExtId1);
    Work work2 = (Work) unmarshallFromPath("/record_2.0_rc1/samples/work-2.0_rc1.xml", Work.class);
    work2.setPutCode(null);
    work2.setVisibility(Visibility.PUBLIC);
    org.orcid.jaxb.model.record_rc1.WorkTitle title2 = new org.orcid.jaxb.model.record_rc1.WorkTitle();
    title2.setTitle(new Title("Work # 2" + time));
    work2.setWorkTitle(title2);
    work2.getExternalIdentifiers().getExternalIdentifier().clear();
    WorkExternalIdentifier wExtId2 = new WorkExternalIdentifier();
    wExtId2.setWorkExternalIdentifierId(new WorkExternalIdentifierId("Work Id " + time));
    wExtId2.setWorkExternalIdentifierType(WorkExternalIdentifierType.AGR);
    wExtId2.setRelationship(Relationship.PART_OF);
    wExtId2.setUrl(new Url("http://orcid.org/work#2"));
    work2.getExternalIdentifiers().getWorkExternalIdentifier().clear();
    work2.getExternalIdentifiers().getWorkExternalIdentifier().add(wExtId2);
    Work work3 = (Work) unmarshallFromPath("/record_2.0_rc1/samples/work-2.0_rc1.xml", Work.class);
    work3.setPutCode(null);
    work3.setVisibility(Visibility.PUBLIC);
    org.orcid.jaxb.model.record_rc1.WorkTitle title3 = new org.orcid.jaxb.model.record_rc1.WorkTitle();
    title3.setTitle(new Title("Work # 3" + time));
    work3.setWorkTitle(title3);
    work3.getExternalIdentifiers().getExternalIdentifier().clear();
    WorkExternalIdentifier wExtId3 = new WorkExternalIdentifier();
    wExtId3.setWorkExternalIdentifierId(new WorkExternalIdentifierId("Work Id " + time));
    wExtId3.setWorkExternalIdentifierType(WorkExternalIdentifierType.AGR);
    wExtId3.setRelationship(Relationship.SELF);
    wExtId3.setUrl(new Url("http://orcid.org/work#3"));
    work3.getExternalIdentifiers().getWorkExternalIdentifier().clear();
    work3.getExternalIdentifiers().getWorkExternalIdentifier().add(wExtId3);
    // Add the three works
    ClientResponse postResponse = memberV2ApiClient.createWorkXml(this.getUser1OrcidId(), work1, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    postResponse = memberV2ApiClient.createWorkXml(this.getUser1OrcidId(), work2, accessTokenForClient1);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    postResponse = memberV2ApiClient.createWorkXml(this.getUser1OrcidId(), work3, accessTokenForClient2);
    assertNotNull(postResponse);
    assertEquals(Response.Status.CREATED.getStatusCode(), postResponse.getStatus());
    ClientResponse activitiesResponse = memberV2ApiClient.viewActivities(this.getUser1OrcidId(), accessTokenForClient1);
    assertEquals(Response.Status.OK.getStatusCode(), activitiesResponse.getStatus());
    ActivitiesSummary activities = activitiesResponse.getEntity(ActivitiesSummary.class);
    assertNotNull(activities);
    assertFalse(activities.getWorks().getWorkGroup().isEmpty());
    WorkGroup work1Group = null;
    WorkGroup work2Group = null;
    WorkGroup work3Group = null;
    boolean work1found = false;
    boolean work2found = false;
    boolean work3found = false;
    List<Long> putCodes = new ArrayList<Long>();
    for (WorkGroup group : activities.getWorks().getWorkGroup()) {
        if (group.getIdentifiers().getIdentifier() == null || group.getIdentifiers().getIdentifier().isEmpty()) {
            for (WorkSummary summary : group.getWorkSummary()) {
                String title = summary.getTitle().getTitle().getContent();
                if (("Work # 2" + time).equals(title)) {
                    work2found = true;
                    work2Group = group;
                    putCodes.add(summary.getPutCode());
                }
            }
        } else {
            for (Identifier id : group.getIdentifiers().getIdentifier()) {
                // If it is the ID is the one we are looking for
                if (id.getExternalIdentifierId().equals("Work Id " + time)) {
                    for (WorkSummary summary : group.getWorkSummary()) {
                        String title = summary.getTitle().getTitle().getContent();
                        if (("Work # 1" + time).equals(title)) {
                            work1found = true;
                            work1Group = group;
                            putCodes.add(summary.getPutCode());
                        } else if (("Work # 3" + time).equals(title)) {
                            work3found = true;
                            work3Group = group;
                            putCodes.add(summary.getPutCode());
                        }
                    }
                }
            }
        }
    }
    assertTrue("Work1: " + work1found + " work2 " + work2found + " work3 " + work3found, work1found && work2found && work3found);
    // Check that work # 1 and Work # 3 are in the same work
    assertEquals(work1Group, work3Group);
    // Check that work # 2 is not in the same group than group # 1
    assertThat(work2Group, not(work1Group));
    // Delete all elements created
    for (Long putCode : putCodes) {
        ClientResponse deleteResponse = memberV2ApiClient.deleteWorkXml(this.getUser1OrcidId(), putCode, accessTokenForClient1);
        if (Response.Status.NO_CONTENT.getStatusCode() != deleteResponse.getStatus()) {
            deleteResponse = memberV2ApiClient.deleteWorkXml(this.getUser1OrcidId(), putCode, accessTokenForClient2);
            assertEquals("Cant delete work " + putCode, Response.Status.NO_CONTENT.getStatusCode(), deleteResponse.getStatus());
        }
    }
}

Example 3 with Identifier

use of org.flyte.api.v1.Identifier in project cxf by apache.

the class RMCaptureOutInterceptor method handle.

protected void handle(Message msg) throws SequenceFault, RMException {
    AddressingProperties maps = ContextUtils.retrieveMAPs(msg, false, true, false);
    if (null == maps) {
        LogUtils.log(LOG, Level.WARNING, "MAPS_RETRIEVAL_FAILURE_MSG");
        return;
    }
    if (Boolean.TRUE.equals(msg.get(RMMessageConstants.RM_RETRANSMISSION))) {
        return;
    }
    if (isRuntimeFault(msg)) {
        LogUtils.log(LOG, Level.WARNING, "RUNTIME_FAULT_MSG");
        // in case of a SequenceFault or other WS-RM related fault, set action appropriately.
        // the received inbound maps is available to extract some values in case if needed.
        Throwable cause = msg.getContent(Exception.class).getCause();
        if (cause instanceof SequenceFault || cause instanceof RMException) {
            maps.getAction().setValue(getAddressingNamespace(maps) + "/fault");
        }
        return;
    }
    Source source = getManager().getSource(msg);
    RMConfiguration config = getManager().getEffectiveConfiguration(msg);
    String wsaNamespace = config.getAddressingNamespace();
    String rmNamespace = config.getRMNamespace();
    ProtocolVariation protocol = ProtocolVariation.findVariant(rmNamespace, wsaNamespace);
    RMContextUtils.setProtocolVariation(msg, protocol);
    maps.exposeAs(wsaNamespace);
    String action = null;
    if (null != maps.getAction()) {
        action = maps.getAction().getValue();
    }
    // make sure we use the appropriate namespace
    maps.exposeAs(wsaNamespace);
    if (LOG.isLoggable(Level.FINE)) {
        LOG.fine("Action: " + action);
    }
    boolean isApplicationMessage = !RMContextUtils.isRMProtocolMessage(action);
    boolean isPartialResponse = MessageUtils.isPartialResponse(msg);
    RMConstants constants = protocol.getConstants();
    boolean isLastMessage = RM10Constants.CLOSE_SEQUENCE_ACTION.equals(action);
    RMProperties rmpsOut = RMContextUtils.retrieveRMProperties(msg, true);
    if (null == rmpsOut) {
        rmpsOut = new RMProperties();
        rmpsOut.exposeAs(protocol.getWSRMNamespace());
        RMContextUtils.storeRMProperties(msg, rmpsOut, true);
    }
    // Activate process response for oneWay
    if (msg.getExchange().isOneWay()) {
        msg.getExchange().put(Message.PROCESS_ONEWAY_RESPONSE, true);
    }
    RMProperties rmpsIn = null;
    Identifier inSeqId = null;
    long inMessageNumber = 0;
    if (isApplicationMessage) {
        rmpsIn = RMContextUtils.retrieveRMProperties(msg, false);
        if (null != rmpsIn && null != rmpsIn.getSequence()) {
            inSeqId = rmpsIn.getSequence().getIdentifier();
            inMessageNumber = rmpsIn.getSequence().getMessageNumber();
        }
        ContextUtils.storeDeferUncorrelatedMessageAbort(msg);
    }
    Map<?, ?> invocationContext = (Map<?, ?>) msg.get(Message.INVOCATION_CONTEXT);
    if ((isApplicationMessage || (isLastMessage && invocationContext != null)) && !isPartialResponse) {
        if (LOG.isLoggable(Level.FINE)) {
            LOG.fine("inbound sequence: " + (null == inSeqId ? "null" : inSeqId.getValue()));
        }
        // get the current sequence, requesting the creation of a new one if necessary
        synchronized (source) {
            final SourceSequence seq;
            if (isLastMessage) {
                seq = (SourceSequence) invocationContext.get(SourceSequence.class.getName());
            } else {
                seq = getManager().getSequence(inSeqId, msg, maps);
            }
            assert null != seq;
            // increase message number and store a sequence type object in
            // context
            seq.nextMessageNumber(inSeqId, inMessageNumber, isLastMessage);
            if (Boolean.TRUE.equals(msg.getContextualProperty(RMManager.WSRM_LAST_MESSAGE_PROPERTY))) {
                // mark the message as the last one
                seq.setLastMessage(true);
            }
            rmpsOut.setSequence(seq);
            if (seq.isLastMessage()) {
                source.setCurrent(null);
            }
        }
    } else if (!MessageUtils.isRequestor(msg) && constants.getCreateSequenceAction().equals(action)) {
        maps.getAction().setValue(constants.getCreateSequenceResponseAction());
    } else if (isPartialResponse && action == null && isResponseToAction(msg, constants.getSequenceAckAction())) {
        Collection<SequenceAcknowledgement> acks = rmpsIn != null ? rmpsIn.getAcks() : null;
        if (acks != null && acks.size() == 1) {
            SourceSequence ss = source.getSequence(acks.iterator().next().getIdentifier());
            if (ss != null && ss.allAcknowledged()) {
                setAction(maps, constants.getTerminateSequenceAction());
                setTerminateSequence(msg, ss.getIdentifier(), protocol);
                msg.remove(Message.EMPTY_PARTIAL_RESPONSE_MESSAGE);
                // removing this sequence now. See the comment in SourceSequence.setAcknowledged()
                source.removeSequence(ss);
            }
        }
    }
    // capture message if retransmission possible
    if (isApplicationMessage && !isPartialResponse) {
        OutputStream os = msg.getContent(OutputStream.class);
        // message until connection is setup
        if (!(os instanceof WriteOnCloseOutputStream)) {
            msg.setContent(OutputStream.class, new WriteOnCloseOutputStream(os));
        }
        getManager().initializeInterceptorChain(msg);
        // doneCaptureMessage(msg);
        captureMessage(msg);
    } else if (isLastMessage) {
        // got either the rm11 CS or the rm10 empty LM
        RMStore store = getManager().getStore();
        if (null != store) {
            store.persistOutgoing(rmpsOut.getSourceSequence(), null);
        }
    }
}

Example 4 with Identifier

use of org.flyte.api.v1.Identifier in project cxf by apache.

the class RMOutInterceptor method addAckRequest.

/**
 * Add AcknowledgementRequested to message if needed. The AckRequest mode set either in the message
 * properties or in the source policy is used to determine whether AcknowledgementRequested is always
 * added, never added, or added only when we're waiting for the acknowledgement to a previously-sent
 * message.
 *
 * @param msg
 * @param rmpsIn
 * @param seq
 * @param sequence
 */
protected void addAckRequest(Message msg, RMProperties rmpsIn, SourceSequence seq, SequenceType sequence) {
    AckRequestModeType mode = (AckRequestModeType) msg.get(RMMessageConstants.ACK_REQUEST_MODE);
    if (mode == null) {
        mode = AckRequestModeType.PENDING;
        SourcePolicyType policy = getManager().getSourcePolicy();
        if (policy.isSetAckRequestMode()) {
            mode = policy.getAckRequestMode();
        }
    }
    if (AckRequestModeType.ALWAYS == mode || (mode == AckRequestModeType.PENDING && seq.needAcknowledge(rmpsIn.getMessageNumber()))) {
        Collection<AckRequestedType> reqs = rmpsIn.getAcksRequested();
        if (reqs == null) {
            reqs = new ArrayList<>();
        }
        Identifier identifier = new Identifier();
        identifier.setValue(sequence.getIdentifier().getValue());
        AckRequestedType ackRequest = new AckRequestedType();
        ackRequest.setIdentifier(identifier);
        reqs.add(ackRequest);
        rmpsIn.setAcksRequested(reqs);
    }
}

Example 5 with Identifier

use of org.flyte.api.v1.Identifier in project cxf by apache.

the class Servant method clearUnattachedIdentifier.

Identifier clearUnattachedIdentifier() {
    Identifier ret = unattachedIdentifier;
    unattachedIdentifier = null;
    return ret;
}