Examples with ModelARTResult org.geneontology.minerva.server.handler.ModelARTHandler.ModelARTResult used on opensource projects

Example 1 with ModelARTResult

use of org.geneontology.minerva.server.handler.ModelARTHandler.ModelARTResult in project minerva by geneontology.

the class ARTHandlerTest method getStoredModel.

public static ModelARTResult getStoredModel(String modelId) throws URISyntaxException, IOException {
    URIBuilder builder = new URIBuilder("http://127.0.0.1:6800/search/stored");
    builder.addParameter("id", "gomodel:" + modelId);
    URI artUrl = builder.build();
    String json_result = getJsonStringFromUri(artUrl);
    Gson g = new Gson();
    ModelARTResult result = g.fromJson(json_result, ModelARTResult.class);
    LOGGER.info("Model Stored Model " + json_result);
    return result;
}

Example 2 with ModelARTResult

use of org.geneontology.minerva.server.handler.ModelARTHandler.ModelARTResult in project minerva by geneontology.

the class ARTHandlerTest method testGetModel.

@Test
public final void testGetModel() throws URISyntaxException, IOException, OWLOntologyStorageException, OWLOntologyCreationException, RepositoryException, UnknownIdentifierException {
    // get a hold of a test model
    String mid = "5fbeae9c00000008";
    final String modelId = "http://model.geneontology.org/" + mid;
    M3BatchResponse response = BatchTestTools.getModel(handler, modelId, false);
    ModelARTResult result = getStoredModel(mid);
    // Repeat it after
    response = BatchTestTools.getModel(handler, modelId, false);
    assertFalse("Model should not be modified", response.data.modifiedFlag);
    assertTrue("Active Model should be the same as stored model", equalJsonSize(result.getActiveModel(), result.getStoredModel()));
    // Set up m3Batch response to compare active models
    JsonModel m3JsonModel = m3ResponseToJsonModel(response);
    assertTrue("Active Model should be the same as m3Batch active model", equalJsonSize(result.getActiveModel(), m3JsonModel));
}

Example 3 with ModelARTResult

use of org.geneontology.minerva.server.handler.ModelARTHandler.ModelARTResult in project minerva by geneontology.

the class ARTHandlerTest method testStoredModelModified.

@Test
public final void testStoredModelModified() throws URISyntaxException, IOException, OWLOntologyStorageException, OWLOntologyCreationException, RepositoryException, UnknownIdentifierException {
    // get a hold of a test model
    String mid = "5fbeae9c00000008";
    final String modelId = "http://model.geneontology.org/" + mid;
    M3Request r = BatchTestTools.addIndividual(modelId, "GO:0003674");
    List<M3Request> batch = Collections.singletonList(r);
    M3BatchResponse response = handler.m3Batch("test-user", Collections.emptySet(), "test-intention", "foo-packet-id", batch.toArray(new M3Request[batch.size()]), false, true);
    // Get the model
    response = BatchTestTools.getModel(handler, modelId, false);
    ModelARTResult result = getStoredModel(mid);
    // Repeat
    response = BatchTestTools.getModel(handler, modelId, false);
    int activeIndividualCount = result.getActiveModel().individuals.length;
    int storedIndividualCount = result.getStoredModel().individuals.length;
    assertTrue("Model should be modified", response.data.modifiedFlag);
    assertFalse("Active model should not be the same as stored model", equalJsonSize(result.getActiveModel(), result.getStoredModel()));
    // Since we added one individual
    assertTrue("Active individuals should be one more stored individual count", activeIndividualCount == storedIndividualCount + 1);
    // Set up m3Batch response to compare active models
    JsonModel m3JsonModel = m3ResponseToJsonModel(response);
    assertTrue("Active Model should be the same as m3Batch active model", equalJsonSize(result.getActiveModel(), m3JsonModel));
    // Store the model
    response = storeModel(modelId);
    result = getStoredModel(mid);
    assertFalse("Model should not be modified", response.data.modifiedFlag);
    assertTrue("Active model should be the same as stored model", equalJsonSize(result.getActiveModel(), result.getStoredModel()));
    // Set up m3Batch response to compare active models
    m3JsonModel = m3ResponseToJsonModel(response);
    assertTrue("Active Model should be the same as m3Batch active model", equalJsonSize(result.getActiveModel(), m3JsonModel));
    // After store active should be equal to stored
    storedIndividualCount = result.getStoredModel().individuals.length;
    assertTrue("Active individuals should be one more stored individual count", activeIndividualCount == storedIndividualCount);
    // Get the model
    response = BatchTestTools.getModel(handler, modelId, false);
    assertFalse("Model should not be modified", response.data.modifiedFlag);
    // Set up m3Batch response to compare active models
    m3JsonModel = m3ResponseToJsonModel(response);
    assertTrue("Active Model should be the same as m3Batch active model", equalJsonSize(result.getActiveModel(), m3JsonModel));
}

Example 4 with ModelARTResult

use of org.geneontology.minerva.server.handler.ModelARTHandler.ModelARTResult in project minerva by geneontology.

the class ARTHandlerTest method testStoredModelReset.

@Test
public final void testStoredModelReset() throws URISyntaxException, IOException, OWLOntologyStorageException, OWLOntologyCreationException, RepositoryException, UnknownIdentifierException {
    // get a hold of a test model
    String mid = "5fbeae9c00000008";
    final String modelId = "http://model.geneontology.org/" + mid;
    M3Request r = BatchTestTools.addIndividual(modelId, "GO:0003674");
    List<M3Request> batch = Collections.singletonList(r);
    M3BatchResponse response = handler.m3Batch("test-user", Collections.emptySet(), "test-intention", "foo-packet-id", batch.toArray(new M3Request[batch.size()]), false, true);
    // Reset the model
    response = resetModel(modelId);
    // Get the model
    response = BatchTestTools.getModel(handler, modelId, false);
    ModelARTResult result = getStoredModel(mid);
    assertFalse("Model should not be modified", response.data.modifiedFlag);
    assertTrue("Active Model should be the same as stored model", equalJsonSize(result.getActiveModel(), result.getStoredModel()));
    // Set up m3Batch response to compare active models
    JsonModel m3JsonModel = m3ResponseToJsonModel(response);
    assertTrue("Active Model should be the same as m3Batch active model", equalJsonSize(result.getActiveModel(), m3JsonModel));
}